BAC Information

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BAC

Clone NameB6Ng01-277G16
Chromosome13 (Build37)
Map Location 111,723,378 - 111,868,576
singlet/doubletdoublet
Overlap geneLOC668159
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277G16.bB6Ng01-277G16.g
ACCGA077944GA077945
length7901,115
definitionB6Ng01-277G16.b B6Ng01-277G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,723,378 - 111,724,167)(111,867,442 - 111,868,576)
sequence
gaattccaggccctttaaagtggtatttggtcaacatgggtaagtggaaa
tgggccttaaggaactctgaggaagaagattatagacaacaagcattttg
aaggcagaagcatgtgcctgcatgctcattggaaagacctgataagacta
ctaatggcagcccaaatactagatgggtaaagactcccaaatagtgatgg
ttgacttctttttttcaaataaagaaatatcatttcttaatgaatcttta
aaaatttttattggatattttatttatatacatttcaaatgttattcact
ttccctaattcccccacccaagaaaccccatcccattaccccctattcct
gcttctatgagggtgctcccccactcttgcctccatgccctcacattccc
ctacactgggacattgagccttcatgggaccttgagccacttctcccgtt
gatgcttgacaaggccatcctctgctgcatgtatggctggagccatgggt
ccttccatgtgtactccttggttggtggtttaaatggttgtcttcttcct
ttaacaattttgtcttacaagaaagatgactcccaaagaaacagcacctg
aagttgtcttctggcttgtacaagcatgtacacacttgtgaacccacacc
aacacatacactcattcccaaacccctattttttcctttaaattaaaaaa
ttacaaatatatgttatatattttaatgtatctggaaagtaggaaaaaca
taaagacctaactctgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcttctttgtatttctccgtttgccatcttttcctctgggctagaa
catgatgaggtaagaactttccaacttaccagcctgggatggaaaacaag
ggcagaatgaggaaggcctctgtctggtggcagcacaggaactttctgta
gatttaattctcttcatatcttcctaagaaagtcactcctggtatctaac
aatgaaataaccattgtgaccaatggggttttagtcttgtcttcagtcct
ttgagacctgcgtatatcaagggagagccacaaatattatctcagtggag
cattcatcttgctttttttctgaagccgaaactgtgtgcttgtgtcacga
ttgtttttgtcattttcctgagctctttgaatatagaacttctttctgtc
tccatgcagggttctctgattaacacttttactctaaggacaagagttgt
tccctctcatgttcattgagcaactgctatggagatattaagtgctggag
aacacgtaagaccatattaggaaatgtgccatgagtttagaataatgcac
taatgggctaaatttcactctcatccacacctagcttcagttgcgaaata
taaatagagattacattcaaatactaaaaatagagttagatatattcgtg
gattaagtaatatcccccaaatcctttaagtgagagatttgctggtatag
ctgaattgtagaaaaaggttttttgttctaagtcaaaggcttgaagtttt
attttatttttccatttttattaggtatttagctcatttacatttccaat
gctataccaaaagtcccccatacccacccaccccactccccttaccacca
ctccccttttggccctggcgttccctgtactggggcatataagtttgcaa
gtccatggcctctttttccagtgatggacgactagacaatctttgataca
tctgcagctagagtcaagagctctggtactggctagttcataggtggtca
ctatagggttgcagattcttagctcttggctacttctctagctcctcatt
ggaggcctgtgatcgatccgattagcctgactggagcatccactcgtgtt
tgcctaggaccccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111723378_111724167
seq2: B6Ng01-277G16.b_50_839

seq1  GAATTCCAGGCCCTTTAAAGTGGTATTTGGTCAACATGGGTAAGTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCCTTTAAAGTGGTATTTGGTCAACATGGGTAAGTGGAAA  50

seq1  TGGGCCTTAAGGAACTCTGAGGAAGAAGATTATAGACAACAAGCATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTAAGGAACTCTGAGGAAGAAGATTATAGACAACAAGCATTTTG  100

seq1  AAGGCAGAAGCATGTGCCTGCATGCTCATTGGAAAGACCTGATAAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAGCATGTGCCTGCATGCTCATTGGAAAGACCTGATAAGACTA  150

seq1  CTAATGGCAGCCCAAATACTAGATGGGTAAAGACTCCCAAATAGTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCAGCCCAAATACTAGATGGGTAAAGACTCCCAAATAGTGATGG  200

seq1  TTGACTTCTTTTTTTCAAATAAAGAAATATCATTTCTTAATGAATCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTTTTTTTCAAATAAAGAAATATCATTTCTTAATGAATCTTTA  250

seq1  AAAATTTTTATTGGATATTTTATTTATATACATTTCAAATGTTATTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTATTGGATATTTTATTTATATACATTTCAAATGTTATTCACT  300

seq1  TTCCCTAATTCCCCCACCCAAGAAACCCCATCCCATTACCCCCTATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAATTCCCCCACCCAAGAAACCCCATCCCATTACCCCCTATTCCT  350

seq1  GCTTCTATGAGGGTGCTCCCCCACTCTTGCCTCCATGCCCTCACATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGAGGGTGCTCCCCCACTCTTGCCTCCATGCCCTCACATTCCC  400

seq1  CTACACTGGGACATTGAGCCTTCATGGGACCTTGAGCCACTTCTCCCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGGGACATTGAGCCTTCATGGGACCTTGAGCCACTTCTCCCGTT  450

seq1  GATGCTTGACAAGGCCATCCTCTGCTGCATGTATGGCTGGAGCCATGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGACAAGGCCATCCTCTGCTGCATGTATGGCTGGAGCCATGGGT  500

seq1  CCTTCCATGTGTACTCCTTGGTTGGTGGTTTAAATGGTTGTCTTCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATGTGTACTCCTTGGTTGGTGGTTTAAATGGTTGTCTTCTTCCT  550

seq1  TTAACAATTTTGTCTTACAAGAAAGATGACTCCCAAAGAAACAGCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATTTTGTCTTACAAGAAAGATGACTCCCAAAGAAACAGCACCTG  600

seq1  AAGTTGTCTTCTGGCTTGTACAAGCATGTACACACTTGTGAACCCACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTTCTGGCTTGTACAAGCATGTACACACTTGTGAACCCACACC  650

seq1  AACACATACACTCATTCCCAAACCCCTATTTTTTCCTTTAAATTAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATACACTCATTCCCAAACCCCTATTTTTTCCTTTAAATTAAAAAA  700

seq1  TTACAAATATATGTTATATATTTTAATGTATCTGGAAAGTAGGAAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATATATGTTATATATTTTAATGTATCTGGAAAGTAGGAAAAACA  750

seq1  TAAAGACCTAACTCTGTGTGTGTGTGTGTGTGTGTGTGTG  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCTAACTCTGTGTGTGTGTGTGTGTGTGTGTGTG  790


seq1: chr13_111867442_111868576
seq2: B6Ng01-277G16.g_65_1179 (reverse)

seq1  CCGGGG-CCTA-GCAAACACAGAAGTGGATGCTCACAGTCA-GCTAAT-G  46
      |||||| |||| ||||||||   ||||||||||| |||||| |||||| |
seq2  CCGGGGTCCTAGGCAAACAC--GAGTGGATGCTC-CAGTCAGGCTAATCG  47

seq1  GATAGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAG  96
      ||| ||||||||| || ||||| |||||||||||| |||||||||| |||
seq2  GATCGATCACAGGCCT-CCAAT-GAGGAGCTAGAG-AAGTAGCCAA-GAG  93

seq1  CTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAG  146
      ||||  | ||||||||||||||||   || || |  ||||||||| ||||
seq2  CTAA--GAATCTGCAACCCTATAG--TGACCACC--TATGAACTAGCCAG  137

seq1  TACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGTCTAG  196
      ||  || ||||||||||||||||||||| ||||||| |||||| ||||||
seq2  TA--CCAGAGCTCTTGACTCTAGCTGCAGATGTATC-AAAGATTGTCTAG  184

seq1  TCGGCCATCACTGGAAAAAGAGGCCCATTGGACTTGCAAACTTTATATGC  246
      ||| |||||||||||||||||||||   ||||||||||||| ||||||||
seq2  TCGTCCATCACTGGAAAAAGAGGCC--ATGGACTTGCAAAC-TTATATGC  231

seq1  CCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGG  296
      ||||||||| |||||||||||||||||||  ||||||| |||||  ||||
seq2  CCCAGTACA-GGGAACGCCAGGGCCAAAA--GGGGAGT-GGTGGTAAGGG  277

seq1  GAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGT  346
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGT-GGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGT  326

seq1  AAATGAGCTAAATACCTAATAAAAATGGAAAAATAAAATAAAACTTCAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTAAATACCTAATAAAAATGGAAAAATAAAATAAAACTTCAAG  376

seq1  CCTTTGACTTAGAACAAAAAACCTTTTTCTACAATTCAGCTATACCAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACTTAGAACAAAAAACCTTTTTCTACAATTCAGCTATACCAGCA  426

seq1  AATCTCTCACTTAAAGGATTTGGGGGATATTACTTAATCCACGAATATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCACTTAAAGGATTTGGGGGATATTACTTAATCCACGAATATAT  476

seq1  CTAACTCTATTTTTAGTATTTGAATGTAATCTCTATTTATATTTCGCAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTATTTTTAGTATTTGAATGTAATCTCTATTTATATTTCGCAAC  526

seq1  TGAAGCTAGGTGTGGATGAGAGTGAAATTTAGCCCATTAGTGCATTATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAGGTGTGGATGAGAGTGAAATTTAGCCCATTAGTGCATTATTC  576

seq1  TAAACTCATGGCACATTTCCTAATATGGTCTTACGTGTTCTCCAGCACTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCATGGCACATTTCCTAATATGGTCTTACGTGTTCTCCAGCACTT  626

seq1  AATATCTCCATAGCAGTTGCTCAATGAACATGAGAGGGAACAACTCTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCCATAGCAGTTGCTCAATGAACATGAGAGGGAACAACTCTTGT  676

seq1  CCTTAGAGTAAAAGTGTTAATCAGAGAACCCTGCATGGAGACAGAAAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGTAAAAGTGTTAATCAGAGAACCCTGCATGGAGACAGAAAGAA  726

seq1  GTTCTATATTCAAAGAGCTCAGGAAAATGACAAAAACAATCGTGACACAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATTCAAAGAGCTCAGGAAAATGACAAAAACAATCGTGACACAA  776

seq1  GCACACAGTTTCGGCTTCAGAAAAAAAGCAAGATGAATGCTCCACTGAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTTTCGGCTTCAGAAAAAAAGCAAGATGAATGCTCCACTGAGA  826

seq1  TAATATTTGTGGCTCTCCCTTGATATACGCAGGTCTCAAAGGACTGAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGTGGCTCTCCCTTGATATACGCAGGTCTCAAAGGACTGAAGA  876

seq1  CAAGACTAAAACCCCATTGGTCACAATGGTTATTTCATTGTTAGATACCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTAAAACCCCATTGGTCACAATGGTTATTTCATTGTTAGATACCA  926

seq1  GGAGTGACTTTCTTAGGAAGATATGAAGAGAATTAAATCTACAGAAAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACTTTCTTAGGAAGATATGAAGAGAATTAAATCTACAGAAAGTT  976

seq1  CCTGTGCTGCCACCAGACAGAGGCCTTCCTCATTCTGCCCTTGTTTTCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTGCCACCAGACAGAGGCCTTCCTCATTCTGCCCTTGTTTTCCA  1026

seq1  TCCCAGGCTGGTAAGTTGGAAAGTTCTTACCTCATCATGTTCTAGCCCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCTGGTAAGTTGGAAAGTTCTTACCTCATCATGTTCTAGCCCAG  1076

seq1  AGGAAAAGATGGCAAACGGAGAAATACAAAGAAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGATGGCAAACGGAGAAATACAAAGAAGAATTC  1115


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