BAC Information

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BAC

Clone NameB6Ng01-277P06
Chromosome13 (Build37)
Map Location 63,531,267 - 63,682,818
singlet/doubletdoublet
Overlap geneFancc, Ptch1
Upstream gene8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277P06.bB6Ng01-277P06.g
ACCGA078329GA078330
length3131,064
definitionB6Ng01-277P06.b B6Ng01-277P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,682,506 - 63,682,818)(63,531,267 - 63,532,323)
sequence
atcaatgtgaacaacgaagctaaggacatgacttcatggatttttttttt
actatgtctcatatttataacaccaagcagagtggtcaacaaataaaaat
cactgacttacacaagaccactgatgtgatgtaatgtgatgaccaaaaga
tgactccactgataggctgacttctgcagctcacacttctgactccactg
ataggcttacttctgcagttcacacttctgaccacactgataggctgact
tctgcagctcacacttcttagccctccagtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
gaattctagcctgacctgaggctctaccactcctgttatggttctatcac
taggatgaaattccttggggcctctctgtggcctagaaaatccaaccaac
ttcctactggccaggatggcctccctgaagtagcttttataaatacaaga
ttggtgtaattcttgctggaactatttgccaaaatatggaagcagttaag
agccccattcatttaaaatgtgcatacagcttcacatggacaacaacata
cgtgccatgaccactcacacaagggaacactgaagagggctggggagcta
gctcagttgataagatgcctgccattacaagcatgagaacatgaattcta
tccccagaacacacgttcgttgctgtgtgtgcgtgtgtatttaaggtttt
aagtgtgtggcccacatttgtcatctcagcaatggggaggcagagaaagg
cataaccccaagggcttgcaaagtcaggtgacctacaagccaaatgtgat
gggtgtgaggagaggcgggggacgaataaggagggaaagatggggcactc
ctgacaccacctctggcctctacatacacacacataaccgccagttgttc
aattgtgagcgttaaatctgccatttggaagcaccctaaaggcgagggcc
atccacaaataggtatctcacgtcggtcacacccgcttagattaatttaa
tgagggatgggatttttcgaatcatctcatactagaggaaaagtccaggc
acacagaggtcttcaatatcattggcctgttccaagattttcatccagca
ccccctccaagcccaagcacctaaaaactgttccagtaaggcagcaagac
agcaagacacaagcattaaacactctcaggccttgaatgggccctctggg
cctgtcactcaagcagctgtgggagggcgattctttgagacccttgagca
gagctgcttctaatgggatggcgagcaataagcttcaccttttgccccca
gtctttccaaaagtactgcgcttacgttggaatctagagggaagaggatt
gccttaacaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63682506_63682818
seq2: B6Ng01-277P06.b_54_366 (reverse)

seq1  CACACACACACACACACACACACACACACACACACTGGAGGGCTAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACTGGAGGGCTAAGAAG  50

seq1  TGTGAGCTGCAGAAGTCAGCCTATCAGTGTGGTCAGAAGTGTGAACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCAGAAGTCAGCCTATCAGTGTGGTCAGAAGTGTGAACTGCA  100

seq1  GAAGTAAGCCTATCAGTGGAGTCAGAAGTGTGAGCTGCAGAAGTCAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGCCTATCAGTGGAGTCAGAAGTGTGAGCTGCAGAAGTCAGCCT  150

seq1  ATCAGTGGAGTCATCTTTTGGTCATCACATTACATCACATCAGTGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGAGTCATCTTTTGGTCATCACATTACATCACATCAGTGGTCTT  200

seq1  GTGTAAGTCAGTGATTTTTATTTGTTGACCACTCTGCTTGGTGTTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTCAGTGATTTTTATTTGTTGACCACTCTGCTTGGTGTTATAAA  250

seq1  TATGAGACATAGTAAAAAAAAAATCCATGAAGTCATGTCCTTAGCTTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACATAGTAAAAAAAAAATCCATGAAGTCATGTCCTTAGCTTCGT  300

seq1  TGTTCACATTGAT  313
      |||||||||||||
seq2  TGTTCACATTGAT  313

seq1: chr13_63531267_63532323
seq2: B6Ng01-277P06.g_68_1131

seq1  GAATTCTAGCCTGACCTGAGGCTCTACCACTCCTGTTATGGTTCTATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCTGACCTGAGGCTCTACCACTCCTGTTATGGTTCTATCAC  50

seq1  TAGGATGAAATTCCTTGGGGCCTCTCTGTGGCCTAGAAAATCCAACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGAAATTCCTTGGGGCCTCTCTGTGGCCTAGAAAATCCAACCAAC  100

seq1  TTCCTACTGGCCAGGATGGCCTCCCTGAAGTAGCTTTTATAAATACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGGCCAGGATGGCCTCCCTGAAGTAGCTTTTATAAATACAAGA  150

seq1  TTGGTGTAATTCTTGCTGGAACTATTTGCCAAAATATGGAAGCAGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTAATTCTTGCTGGAACTATTTGCCAAAATATGGAAGCAGTTAAG  200

seq1  AGCCCCATTCATTTAAAATGTGCATACAGCTTCACATGGACAACAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATTCATTTAAAATGTGCATACAGCTTCACATGGACAACAACATA  250

seq1  CGTGCCATGACCACTCACACAAGGGAACACTGAAGAGGGCTGGGGAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCATGACCACTCACACAAGGGAACACTGAAGAGGGCTGGGGAGCTA  300

seq1  GCTCAGTTGATAAGATGCCTGCCATTACAAGCATGAGAACATGAATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTGATAAGATGCCTGCCATTACAAGCATGAGAACATGAATTCTA  350

seq1  TCCCCAGAACACACGTTCGTTGCTGTGTGTGCGTGTGTATTTAAGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAACACACGTTCGTTGCTGTGTGTGCGTGTGTATTTAAGGTTTT  400

seq1  AAGTGTGTGGCCCACATTTGTCATCTCAGCAATGGGGAGGCAGAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGGCCCACATTTGTCATCTCAGCAATGGGGAGGCAGAGAAAGG  450

seq1  CATAACCCCAAGGGCTTGCAAAGTCAGGTGACCTACAAGCCAAATGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCCAAGGGCTTGCAAAGTCAGGTGACCTACAAGCCAAATGTGAT  500

seq1  GGGTGTGAGGAGAGGCGGGGGACGAATAAGGAGGGAAAGATGGGGCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAGGAGAGGCGGGGGACGAATAAGGAGGGAAAGATGGGGCACTC  550

seq1  CTGACACCACCTCTGGCCTCTACATACACACACATAACCGCCAGTTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCACCTCTGGCCTCTACATACACACACATAACCGCCAGTTGTTC  600

seq1  AATTGTGAGCGTTAAATCTGCCATTTGGAAGCACCCTAAAGGCGAGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAGCGTTAAATCTGCCATTTGGAAGCACCCTAAAGGCGAGGGCC  650

seq1  ATCCACAAATAGGTATCTCACGTCGGTCACACCCGCTTAGATTAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAATAGGTATCTCACGTCGGTCACACCCGCTTAGATTAATTTAA  700

seq1  TGAGGGATGGGATTTTTCGAATCATCTCATACTAGAGGAAAAGTCCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATGGGATTTTTCGAATCATCTCATACTAGAGGAAAAGTCCAGGC  750

seq1  ACACAGAGGTCTTCAATATCATTGGCCTGTTCCAAGATTTTCATCCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGTCTTCAATATCATTGGCCTGTTCCAAGATTTTCATCCAGCA  800

seq1  CCCCCTCCAAGCCCAAGCACCTAAAAACTGTTCCAGTAAGGCAGCAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCAAGCCCAAGCACCTAAAAACTGTTCCAGTAAGGCAGCAAGAC  850

seq1  AGCAAGACACAAGCATTAAACACTCTCAGGCCTTGAATGGG-CCTCTGGG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCAAGACACAAGCATTAAACACTCTCAGGCCTTGAATGGGCCCTCTGGG  900

seq1  CCTGTCACTCAAGCAGCTGTGGGAGGGCGAT--CTTGAGACCC-TGAGCA  946
      |||||||||||||||||||||||||||||||   ||||||||| ||||||
seq2  CCTGTCACTCAAGCAGCTGTGGGAGGGCGATTCTTTGAGACCCTTGAGCA  950

seq1  GAGCTGC-TCTAAT-GGATGGCGAGCAATAAGCTTCACCTTT--GCCCCA  992
      ||||||| |||||| |||||||||||||||||||||||||||   |||||
seq2  GAGCTGCTTCTAATGGGATGGCGAGCAATAAGCTTCACCTTTTGCCCCCA  1000

seq1  GTCCTTCCAAAAGTACCTGCGGCTACGTT-GAAACCAGAGGG-AGAGGAT  1040
      ||| ||||||||||| |||||  |||||| ||| | |||||| |||||||
seq2  GTCTTTCCAAAAGTA-CTGCGCTTACGTTGGAATCTAGAGGGAAGAGGAT  1049

seq1  TTGCTTAAAACAATAAA  1057
      |  |||  |||||||||
seq2  TGCCTT--AACAATAAA  1064