BAC Information

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BAC

Clone NameB6Ng01-278A04
Chromosome13 (Build37)
Map Location 5,550,823 - 5,658,856
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A04.bB6Ng01-278A04.g
ACCGA078373GA078374
length1,1821,106
definitionB6Ng01-278A04.b B6Ng01-278A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,657,677 - 5,658,856)(5,550,823 - 5,551,938)
sequence
gaattcttctatattactgttctaaaatctaatctttttctgtcatggat
agtcctcatcagacatcactacttaggcatgtattagctcctttgagcaa
cacttgcctaatagagaactagatatcattgtactctattagccttttac
ttgaatacctctcctgaggcatccttaatgaatgggatggacagttagac
agatggatggacacaagtgcagacagatacagagatgaaaaatatatgat
aatactgttctgtagtttgaatgtggtttgtccttgcagaaactttgtgg
aaatataaccaatgttatgaatatattatggatcaggattagttgggtca
tagcacatgtcaagaataggcttgttataaaaaacatcttgactattcct
cttgctctgtcccagtagattgccaaatgaagccctgtatgatcatagga
cttctttggggaaaagaccatttctaactgtaattccacagcaatagacc
ataaagattccaaaataaagacatcacaagatggaaagatcatggcttgg
aagggcatggcttagaagaatcaatatgaacatggttattgcacctaaaa
caatatgtatattcaacataattcttttcaaaatggagaaaaatatcata
aacttaacatttaacatgggaacacaaaagatcccagatagagcaggaaa
ccctgagaactaagaataaagtattggagtgaactcacaaaggaaagcaa
cctgcagctcttcgctatggtagctatgaaaacacctgttcagcttccat
attattttttaaaaagataaaagaagaataattcacacctcagaactaca
gtaattgaaacggtatggcaatggcacaaaaccagacatgcagaccaaca
ggatagaaaagaggacacagctgtaagctcacatagctatagacccatga
gttttaacaaagcaccaaaaacacacaggaagaaagacagcttcttcaac
aaaggacgcttggaaacatggatagctacatgtacaagcatgaacatata
actcatcctcgccatttatacaaagatcattccaaatggaatgaagaacc
taaatatctgtcagaactcctggaaacaatttaaggagataggttaaggg
aaaactttcagaaaccgaatatagcctaagga

gaattcagaccaggccagatctctttttacttccttctatggtgttaaat
ttctgtgagagacaaagagttaattattaaccaaatttcaaactagaaag
atatagatatgaatatgtaatatgacttccataagttcctgagacttcat
taaagcgttcatatctcatatgtttgtacacaactatcactttttaatag
agaggtagttccttcatttagaaaacgttattcccaacaaatacattttt
ccaaataaaggtatataatgtatacataaacatcatacacatatatttat
atatgcatgcacacacaaatttatttctttaaattacatatgtgtgtaca
catgaaggtttacctaattgcttgcttggctggttataaatttatttggg
acaatatcctccgcagagcccaaggtgaccttgaaccttcgatcctctta
cttctgcctctctagtgctaagcctatagttttatgccaccatgctaaat
ttaaaacgtcattactgttcaaaaaaaaaaatctaggatacaatctaaga
tctcatactaaacggcattggataactttcatgcccctatctggtagcag
tgcttggttctatacctgaatgaaaaatgaatgatgtgaattcataaaac
ctttagcatgtctgttacaaaatactcagtgaaagtaagtaattcaatat
tattactggcattgtgtcctttaaagctcttttgatgaataattttactg
tttattcattgagaaagaataatgactcatccaggttgtttggggatata
accaaacaacacatatgcagtatatagttcagtgtcctgcgcacagtgag
actaacacaaatactctttgtctttgccccattcttcttcccactgaaag
cctcttttaccagttctgtaaaggggagcacacgtctctgtctctattca
ctttccccatcatggcactaatgactgacatggatattttatttttagtt
aattataatcaatacaactagaagctaaatttctcatgtctaccactaga
atcatagaatgggattttttttcctctgtgagacaacattctaggcagtc
ggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5657677_5658856
seq2: B6Ng01-278A04.b_46_1227 (reverse)

seq1  TCCTTA-GCTATA-TCTGTTTCTTGAAGTTTTCCCCTTACCTTATCCTCC  48
      |||||| |||||| || ||||||  ||||||| |||||| | ||||  | 
seq2  TCCTTAGGCTATATTCGGTTTCTGAAAGTTTT-CCCTTAACCTATCTCCT  49

seq1  TAAATTGTTT-CAGAGTTTCTGACCAGAATATTAGGGTCTTCAATCCATT  97
      |||||||||| |||   |||||| ||||   ||||| |||||| ||||||
seq2  TAAATTGTTTCCAGGAGTTCTGA-CAGATATTTAGGTTCTTCATTCCATT  98

seq1  TGGAATTGATCTTTGTATAAATGGCGA-GATGAG-TATATGTTCATGCTT  145
      ||||| ||||||||||||||||||||| |||||| |||||||||||||||
seq2  TGGAA-TGATCTTTGTATAAATGGCGAGGATGAGTTATATGTTCATGCTT  147

seq1  GTACATGTAGCTATCCATGTTTCCAAGCGTCCTTTGTTGAAGAAGCTGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTAGCTATCCATGTTTCCAAGCGTCCTTTGTTGAAGAAGCTGTC  197

seq1  TTTCCTTCTGTGTGTTTTTGGTGCTTTGTTAAAACTCATGGGTCTATAGC  245
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTGTGTGTTTTTGGTGCTTTGTTAAAACTCATGGGTCTATAGC  247

seq1  TATGTGAGCTTACAGCTGTGTCCTCTTTTCTATCCTGTTGGTCTGCATGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCTTACAGCTGTGTCCTCTTTTCTATCCTGTTGGTCTGCATGT  297

seq1  CTGGTTTTGTGCCATTGCCATACCGTTTCAATTACTGTAGTTCTGAGGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGTGCCATTGCCATACCGTTTCAATTACTGTAGTTCTGAGGTG  347

seq1  TGAATTATTCTTCTTTTATCTTTTTAAAAAATAATATGGAAGCTGAACAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTCTTCTTTTATCTTTTTAAAAAATAATATGGAAGCTGAACAG  397

seq1  GTGTTTTCATAGCTACCATAGCGAAGAGCTGCAGGTTGCTTTCCTTTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCATAGCTACCATAGCGAAGAGCTGCAGGTTGCTTTCCTTTGTG  447

seq1  AGTTCACTCCAATACTTTATTCTTAGTTCTCAGGGTTTCCTGCTCTATCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTCCAATACTTTATTCTTAGTTCTCAGGGTTTCCTGCTCTATCT  497

seq1  GGGATCTTTTGTGTTCCCATGTTAAATGTTAAGTTTATGATATTTTTCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTTTGTGTTCCCATGTTAAATGTTAAGTTTATGATATTTTTCTC  547

seq1  CATTTTGAAAAGAATTATGTTGAATATACATATTGTTTTAGGTGCAATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAAGAATTATGTTGAATATACATATTGTTTTAGGTGCAATAA  597

seq1  CCATGTTCATATTGATTCTTCTAAGCCATGCCCTTCCAAGCCATGATCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCATATTGATTCTTCTAAGCCATGCCCTTCCAAGCCATGATCTT  647

seq1  TCCATCTTGTGATGTCTTTATTTTGGAATCTTTATGGTCTATTGCTGTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGTGATGTCTTTATTTTGGAATCTTTATGGTCTATTGCTGTGG  697

seq1  AATTACAGTTAGAAATGGTCTTTTCCCCAAAGAAGTCCTATGATCATACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGTTAGAAATGGTCTTTTCCCCAAAGAAGTCCTATGATCATACA  747

seq1  GGGCTTCATTTGGCAATCTACTGGGACAGAGCAAGAGGAATAGTCAAGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATTTGGCAATCTACTGGGACAGAGCAAGAGGAATAGTCAAGAT  797

seq1  GTTTTTTATAACAAGCCTATTCTTGACATGTGCTATGACCCAACTAATCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTATAACAAGCCTATTCTTGACATGTGCTATGACCCAACTAATCC  847

seq1  TGATCCATAATATATTCATAACATTGGTTATATTTCCACAAAGTTTCTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATAATATATTCATAACATTGGTTATATTTCCACAAAGTTTCTGC  897

seq1  AAGGACAAACCACATTCAAACTACAGAACAGTATTATCATATATTTTTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAACCACATTCAAACTACAGAACAGTATTATCATATATTTTTCA  947

seq1  TCTCTGTATCTGTCTGCACTTGTGTCCATCCATCTGTCTAACTGTCCATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATCTGTCTGCACTTGTGTCCATCCATCTGTCTAACTGTCCATC  997

seq1  CCATTCATTAAGGATGCCTCAGGAGAGGTATTCAAGTAAAAGGCTAATAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTAAGGATGCCTCAGGAGAGGTATTCAAGTAAAAGGCTAATAG  1047

seq1  AGTACAATGATATCTAGTTCTCTATTAGGCAAGTGTTGCTCAAAGGAGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATGATATCTAGTTCTCTATTAGGCAAGTGTTGCTCAAAGGAGCT  1097

seq1  AATACATGCCTAAGTAGTGATGTCTGATGAGGACTATCCATGACAGAAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGCCTAAGTAGTGATGTCTGATGAGGACTATCCATGACAGAAAA  1147

seq1  AGATTAGATTTTAGAACAGTAATATAGAAGAATTC  1180
      |||||||||||||||||||||||||||||||||||
seq2  AGATTAGATTTTAGAACAGTAATATAGAAGAATTC  1182


seq1: chr13_5550823_5551938
seq2: B6Ng01-278A04.g_67_1172

seq1  GAATTCAGACCAGGCCAGATCTCTTTTTACTTCCTTCTATGGTGTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCAGGCCAGATCTCTTTTTACTTCCTTCTATGGTGTTAAAT  50

seq1  TTCTGTGAGAGACAAAGAGTTAATTATTAACCAAATTTCAAACTAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAGACAAAGAGTTAATTATTAACCAAATTTCAAACTAGAAAG  100

seq1  ATATAGATATGAATATGTAATATGACTTCCATAAGTTCCTGAGACTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATATGAATATGTAATATGACTTCCATAAGTTCCTGAGACTTCAT  150

seq1  TAAAGCGTTCATATCTCATATGTTTGTACACAACTATCACTTTTTAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGTTCATATCTCATATGTTTGTACACAACTATCACTTTTTAATAG  200

seq1  AGAGGTAGTTCCTTCATTTAGAAAACGTTATTCCCAACAAATACATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGTTCCTTCATTTAGAAAACGTTATTCCCAACAAATACATTTTT  250

seq1  CCAAATAAAGGTATATAATGTATACATAAACATCATACACATATATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAAGGTATATAATGTATACATAAACATCATACACATATATTTAT  300

seq1  ATATGCATGCACACACAAATTTATTTCTTTAAATTACATATGTGTGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGCACACACAAATTTATTTCTTTAAATTACATATGTGTGTACA  350

seq1  CATGAAGGTTTACCTAATTGCTTGCTTGGCTGGTTATAAATTTATTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGTTTACCTAATTGCTTGCTTGGCTGGTTATAAATTTATTTGGG  400

seq1  ACAATATCCTCCGCAGAGCCCAAGGTGACCTTGAACCTTCGATCCTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATCCTCCGCAGAGCCCAAGGTGACCTTGAACCTTCGATCCTCTTA  450

seq1  CTTCTGCCTCTCTAGTGCTAAGCCTATAGTTTTATGCCACCATGCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTCTCTAGTGCTAAGCCTATAGTTTTATGCCACCATGCTAAAT  500

seq1  TTAAAACGTCATTACTGTTCAAAAAAAAAAATCTAGGATACAATCTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACGTCATTACTGTTCAAAAAAAAAAATCTAGGATACAATCTAAGA  550

seq1  TCTCATACTAAACGGCATTGGATAACTTTCATGCCCCTATCTGGTAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACTAAACGGCATTGGATAACTTTCATGCCCCTATCTGGTAGCAG  600

seq1  TGCTTGGTTCTATACCTGAATGAAAAATGAATGATGTGAATTCATAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTTCTATACCTGAATGAAAAATGAATGATGTGAATTCATAAAAC  650

seq1  CTTTAGCATGTCTGTTACAAAATACTCAGTGAAAGTAAGTAATTCAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCATGTCTGTTACAAAATACTCAGTGAAAGTAAGTAATTCAATAT  700

seq1  TATTACTGGCATTGTGTCCTTTAAAGCTCTTTTGATGAATAATTTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGGCATTGTGTCCTTTAAAGCTCTTTTGATGAATAATTTTACTG  750

seq1  TTTATTCATTGAGAAAGAATAATGACTCATCCAGGTTGTTTGGGGATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATTGAGAAAGAATAATGACTCATCCAGGTTGTTTGGGGATATA  800

seq1  ACCAAACAACACATATGCAGTATATAGTTCAGTGTCCTGCGCACAGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAACACATATGCAGTATATAGTTCAGTGTCCTGCGCACAGTGAG  850

seq1  ACTAACACAAATACTCTTTGTCTTTGCCCCATTCTTCTTCCCACTGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACAAATACTCTTTGTCTTTGCCCCATTCTTCTTCCCACTGAAAG  900

seq1  CCTCTTTTACCAGTTCTGTAAAGGGGAGCACACGTCTCTGTCTCTATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTACCAGTTCTGTAAAGGGGAGCACACGTCTCTGTCTCTATTCA  950

seq1  ACTTCCCCATCATGGCAACTAATGACTGAACATGGATATTTATTTTTAAG  1000
        |||||||||||||| ||||||||||| ||||||||||||  |||| ||
seq2  CTTTCCCCATCATGGC-ACTAATGACTG-ACATGGATATTTTATTTTTAG  998

seq1  TTAATTATAATCAAATACAAACTAGAAGCTAAATTTCTCATGTCTACCAC  1050
      |||||||||||| ||||| |||||||||||||||||||||||||||||| 
seq2  TTAATTATAATC-AATAC-AACTAGAAGCTAAATTTCTCATGTCTACCA-  1045

seq1  CTAGAAATCATAGAAATGGGATTTTTTTCCTTCTGTGAAGACCAACATTC  1100
      |||| |||||||| |||||||||||||| | |||||| ||| ||||||||
seq2  CTAG-AATCATAG-AATGGGATTTTTTTTCCTCTGTG-AGA-CAACATTC  1091

seq1  TAGGCAGTCCGGCTTT  1116
      |||||||| |||||||
seq2  TAGGCAGT-CGGCTTT  1106


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