BAC Information

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BAC

Clone NameB6Ng01-279H16
Chromosome13 (Build37)
Map Location 114,357,671 - 114,358,819
singlet/doubletsinglet
Overlap genenone
Upstream geneIl31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888
Downstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279H16.bB6Ng01-279H16.g
ACCGA079451GA079452
length1,2391,133
definitionB6Ng01-279H16.b B6Ng01-279H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatctgatttgttctaataggtttgggctgtctggaaatgtttt
catttaataagttgtccaatttgttgaagcacaaactctaaactcttaaa
attattgtacattccatagattttccactcactccataccttccagcatg
aaaacctgttccttttctgattttagtagtttgagtcttctccatttttc
agtgtgtctagctaaatatctaccaattttattgatatttaaaaaagcaa
agtttagactcaatgatttctctttatcctttttctatcatctattcatg
taacctcctccaataagcacacacatcctaattctgctgattttttccta
tttcagtaatttttgtgcagtttgtcattttgtttcaatctaggtatctg
tttactgttttatatgttggattttgtaaaattaccgtgtgcttcatgtt
tcagtgatcagcctggtatataaatctaagctctttggtcactttctaat
tttctccagataggcaattatctttaaaatgttctcatttaaaaaatatt
tttattagttctttcaggattttacatgatgtttttgatcatattcattc
tttcctcaaaccactcccagatatttcccacctccccaactatctgtctc
tcactttaaaaaaaaattaagcccagtttatgttggtcaactcttcctgt
gagtggggcctgccctggagtatggtcaccatagtgccacatcattgatg
aaaactgactttccctctccctgcacaataaaataccaataagtcctcag
ctaagggtgagacagcatcttccctcatctcctctatgctcagagttttc
atctggcttgagcttgctcaggtcctgtacatccagttacaactactgtg
agctcacatgtacagctgccttgctgtgttaggaaacattatctccttga
agctattcacaatctctggctcttgcattaattctgcctcctcttctgct
cttgcgttatttctgcttcttctctgcaatagatttctgagcattgaagg
gaagaacatgtgataacagacagcctagggctgaataacctcgtaggtct
ccttattcctctgcaatgctgaactcttggtaaggccttctgttaagata
cacgctaatggcaaagcaagattctctctatagtgagagctgaaagaaca
cgccctgatctccatatgtggacatccatagaagcacta
gaattccctttcatcagtatgttgctttggaatatttagcttcagagcaa
taacaaccccagctaaattcctaaaatactcattcccttcctggacaatc
gtgtcctaacttggcctgccaccactgctaatgtcttcctttctctgatt
gttcccacacagtgaaaccaaattaatcttcccaaatatagtttggcaca
caacgatatttataaaggatttgttcacttacccctgactcagaatgaac
acaggggacggatgtgcaattcagtggtgcaccacagctcggccagatgg
actcttcagtctggttttcctcaaggccctcccttccctcaccttttgct
gttttactcctctcagtctttttaaaaccaagtcgccctcagcatcagca
tccagtctggcttcctccagcagactctcctatagcattaccttttcctg
ggaagcccccaagccagccctagcttcacattctttactgctgttctaca
tgggtttcgtcaacatgacagtgctagttatgtgagaagatgaatctcag
ctgaggaattacctctgtctgtaggaacattttttaatgtatttgtttgt
tgttgatttttgaaaacaggtgtatctgtagaacagccttggatgccctg
gaactcaagttatagaccaggctgtcctcgaatccacagagatccaccag
cctatgttttaatcccaaagataggattaaaggctttgaccactatgccc
agctcaaggtgttttcttgattaatgattgatgtgggagagcccagccca
gtagaagtggtgtcaccctgcacaggtggtcctggggtctataaggaagc
gaagtgagcaagccacaaggagcaagcaagtaagcagcatccttccgtga
gctttgcttcggtccctgcctccaggttccgcccctggctgaggtcttgc
tcggacttccctcagtgatggactatgcctggaagtgtgagctgaaatag
cctttctctcgaattgcttcagtggtggtttatgttttatcacagaaatg
ggaacagctagacacactgtcagtgcttctcaaaagattcctcagaacag
aaggtgaaatgatctaactatctgacatgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114357671_114358819
seq2: B6Ng01-279H16.g_63_1195

seq1  GAATTCCCTTTCATCAGTATGTTGCTTTGGAATATTTAGCTTCAGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCATCAGTATGTTGCTTTGGAATATTTAGCTTCAGAGCAA  50

seq1  TAACAACCCCAGCTAAATTCCTAAAATACTCATTCCCTTCCTGGACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACCCCAGCTAAATTCCTAAAATACTCATTCCCTTCCTGGACAATC  100

seq1  GTGTCCTAACTTGGCCTGCCACCACTGCTAATGTCTTCCTTTCTCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTAACTTGGCCTGCCACCACTGCTAATGTCTTCCTTTCTCTGATT  150

seq1  GTTCCCACACAGTGAAACCAAATTAATCTTCCCAAATATAGTTTGGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCACACAGTGAAACCAAATTAATCTTCCCAAATATAGTTTGGCACA  200

seq1  CAACGATATTTATAAAGGATTTGTTCACTTACCCCTGACTCAGAATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGATATTTATAAAGGATTTGTTCACTTACCCCTGACTCAGAATGAAC  250

seq1  ACAGGGGACGGATGTGCAATTCAGTGGTGCACCACAGCTCGGCCAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGACGGATGTGCAATTCAGTGGTGCACCACAGCTCGGCCAGATGG  300

seq1  ACTCTTCAGTCTGGTTTTCCTCAAGGCCCTCCCTTCCCTCACCTTTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAGTCTGGTTTTCCTCAAGGCCCTCCCTTCCCTCACCTTTTGCT  350

seq1  GTTTTACTCCTCTCAGTCTTTTTAAAACCAAGTCGCCCTCAGCATCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTCCTCTCAGTCTTTTTAAAACCAAGTCGCCCTCAGCATCAGCA  400

seq1  TCCAGTCTGGCTTCCTCCAGCAGACTCTCCTATAGCATTACCTTTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTGGCTTCCTCCAGCAGACTCTCCTATAGCATTACCTTTTCCTG  450

seq1  GGAAGCCCCCAAGCCAGCCCTAGCTTCACATTCTTTACTGCTGTTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCCAAGCCAGCCCTAGCTTCACATTCTTTACTGCTGTTCTACA  500

seq1  TGGGTTTCGTCAACATGACAGTGCTAGTTATGTGAGAAGATGAATCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCGTCAACATGACAGTGCTAGTTATGTGAGAAGATGAATCTCAG  550

seq1  CTGAGGAATTACCTCTGTCTGTAGGAACATTTTTTAATGTATTTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATTACCTCTGTCTGTAGGAACATTTTTTAATGTATTTGTTTGT  600

seq1  TGTTGATTTTTGAAAACAGGTGTATCTGTAGAACAGCCTTGGATGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTTTTGAAAACAGGTGTATCTGTAGAACAGCCTTGGATGCCCTG  650

seq1  GAACTCAAGTTATAGACCAGGCTGTCCTCGAATCCACAGAGATCCACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGTTATAGACCAGGCTGTCCTCGAATCCACAGAGATCCACCAG  700

seq1  CCTATGTTTTAATCCCAAAGATAGGATTAAAGGCTTTGACCACTATGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTTTAATCCCAAAGATAGGATTAAAGGCTTTGACCACTATGCCC  750

seq1  AGCTCAAGGTGTTTTCTTGATTAATGATTGATGTGGGAGAGCCCAGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGGTGTTTTCTTGATTAATGATTGATGTGGGAGAGCCCAGCCCA  800

seq1  GTAGAAGTGGTGTCACCCTGCACAGGTGGTCCTGGGGTCTATAAGGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTGGTGTCACCCTGCACAGGTGGTCCTGGGGTCTATAAGGAAGC  850

seq1  GAAGTGAGCAAGCCACAAGGAGCAAGCAAGTAAGCAGCATCCTTCCGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGCAAGCCACAAGGAGCAAGCAAGTAAGCAGCATCCTTCCGTGA  900

seq1  GCTTTGCTTCGGTCCCTGCCTCCAGGTTCCCGCCCCTGGCTGAGGTCTTG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTTTGCTTCGGTCCCTGCCTCCAGGTT-CCGCCCCTGGCTGAGGTCTTG  949

seq1  CTCGGACTTCCCTCAGTGATGGACTATTGCCTGGAAGTGTGAGCTGAAAT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCGGACTTCCCTCAGTGATGGACTA-TGCCTGGAAGTGTGAGCTGAAAT  998

seq1  AAGCCCTTTCCTCTCCGAATTGCTTTCAGTTGTGGTTTATGGTTTTATCA  1050
       ||||  || |||| |||||||| |||||| ||||||||| |||||||||
seq2  -AGCC--TTTCTCT-CGAATTGC-TTCAGTGGTGGTTTAT-GTTTTATCA  1042

seq1  CAGAAATGGAAACCAAGCTAAGACAACCACTGTCAGTGCTTCTTCAAAAG  1100
      ||||||||| |||  |||| |||||  ||||||||||||||| |||||||
seq2  CAGAAATGGGAAC--AGCT-AGACA--CACTGTCAGTGCTTC-TCAAAAG  1086

seq1  ATCCCCCCAGAACAG-AGGTGAAATGATCTAAACTATCTAAACATGTGAG  1149
      ||  || |||||||| |||||||||||||| ||||||||  |||||||||
seq2  AT-TCCTCAGAACAGAAGGTGAAATGATCT-AACTATCT-GACATGTGAG  1133