BAC Information

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BAC

Clone NameB6Ng01-279N10
Chromosome13 (Build37)11 (Build37)
Map Location 12,407,768 - 12,407,87738,638,668 - 38,638,731
singlet/doubletsingletsinglet
Overlap geneActn2
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826
Downstream geneEG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N10.bB6Ng01-279N10.g
ACCGA079715GA079716
length84164
definitionB6Ng01-279N10.b B6Ng01-279N10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,407,768 - 12,407,877)(38,638,668 - 38,638,731)
sequence
gaattcagtagtttctcagtctacaaggctggatgtatcagctggtcttt
attatatgctagaattccaaggaagtacaccgtaatgccagtaaaagaat
ggacttcccattgaggcaagaacaagcaggcaggcagagggttttctttt
cctgtgtgctttatataggttgccagcagaaagtgaggtcctgattaaag
gtgcatcttctcacctccaaagatccagattaaaagttatcctcctactc
caaagatccagataacaaatgcatcctctgacttaaaagcatttaatgaa
gaaatgatctttcaccagtgtgcccactcatttagattttatttaattgc
aaatgcagtcaagttaaaaccaatcatagccattacaagtctaccccttg
tcgacttaacatacatacatatctcaagatgtcatgtgtaagtttcaaat
gaaaacaataaacatgtcaaaattacacataaatattatataattaactc
aggcataatcacaaacttatttaactaggtcacatttacacctgacatga
tataactatccctcatataaccacaatcacattgcaaatttaggctatct
agcaatgtctcagtagcaacattcttttaatatctccaactaaaatatga
taaccactgacattcccttatttggttatatcacataaaagattgaggaa
agaaagtacagaaagtacaaaagttttttttttcttaataaaatatgaca
aaaatatgtctgccagttataaacctccttcctataactggccacatggc
ctttacctgggtatgtgtgtgtgtgtgtgtgtgtgtgtgtg
ataccctcttactctttggaaaagtttggtatggagaaggtgttttattt
tggggggagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12407768_12407877
seq2: B6Ng01-279N10.b_855_891 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACCAGGTGCTTTA  50
            |||||||||||||||||||||||||||| || ||||||      
seq2  ------CACACACACACACACACACACACACACATAC-CCAGGT------  37

seq1  TGAAACACACACACACACACACCAGGTGCTTTGTGAAACACACACACACA  100
                                                        
seq2  --------------------------------------------------  37

seq1  TACCCCAGGT  110
                
seq2  ----------  37

seq1: chr11_38638668_38638731
seq2: B6Ng01-279N10.g_71_134

seq1  ATACCCTCTTACTCTTTGGAAAAGTTTGGTATGGAGAAGGTGTTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCTTACTCTTTGGAAAAGTTTGGTATGGAGAAGGTGTTTTATTT  50

seq1  TGGGGGGAGGGGGG  64
      ||||||||||||||
seq2  TGGGGGGAGGGGGG  64