BAC Information

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BAC

Clone NameB6Ng01-280F02
Chromosome13 (Build37)
Map Location 20,348,241 - 20,503,424
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneLOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280F02.bB6Ng01-280F02.g
ACCGA080075GA080076
length1,149601
definitionB6Ng01-280F02.b B6Ng01-280F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,502,280 - 20,503,424)(20,348,241 - 20,348,841)
sequence
gaattcaatatcctcaactaagctatatgattttgaacaggttccttctt
gtagcctcacttgctttctcttttagcaattgctaacacagtagaagccc
cctcccacacccaaaaaaagtttctggaatgaccgtcatggcagattctg
ggattgcagatatgtatatgaaactatagctaaaacattaacaattaaga
ttccctatcccccagcatctcactacccagacatcctcccagaaaccaat
gaacgacagtctcaaactacccatctgcacaaccagtttatgggatgatg
ttaacagatattagccccagccctccatcaggtgaaatctctcattagtt
ctctgttctaagctaagctaagataacatgaataaattgagataaaatga
gataagggactgcctgaggattctcatatcactaaatctgtattatctta
ccttcacaagcatggtaccagaagaaggcttggaccccggtgagtggcag
cgcaggccctcatattattttattttttttaatgaatgatgcaacctacc
tatgaatggacacgggaagtgggctactttactctttctaaagttggtat
tgtaaagttgaggtactcaagcctcaactgaaagaatatccctcatgttc
tagtttcagttcctgtaatcatcgcgatttaacactgaacttaaccttag
ataggaaccaattaaccataaaatatttggtaaacattcatgcttgggag
aaacaataaaaatgtaaaacataatcctacccaggaaaaaaactaaagca
atttactgtagccttgttttctttgatttttttcatgaagattttacttc
tagcaaaatttgtggaaagatttctgctcgtaaagtaaaaatgatttaaa
agcacaagctttttttattgactatagatttctaacccaattctttacaa
ggcctgtgtacccagggagggaagctatgcagcgattaaaagctagtaca
gtcactattccttctaagtgaattctttgacaggggcacagagccagggc
catcttttcatgcatcagtccacaatgagataaatattctgagccacatc
attctttcagattcttacctgaggccactttgctcataacaattccagc
gaattcagcagcttgtgggatgccctgatactttatggttcctttgaaca
catctgtgccattgctgagctggtaatccatatactttctagtgttccta
ggaatagtgatatattccaggggctctctctaaactgtgaaattaataat
tctcgactaacttgttgggctgagattatttttcataaatttagcttttt
taaataaaaggatgtttttataatcatttagtgatatggaaagcccttgt
gtattatctttaaaatatcatgtatccaatcatcccatcctttgccaggt
gctgtgtgcatatgtgttgtgtagaagttgctactgtagtgtcagagtaa
acctcattgctcaaatggttttcgcttccctgaactggagctgctgcctc
ttctgagtactgtgagattgtggtggaaatgactgtgcacggtgactgat
ggctctgtggctttggagttgttgacgcgcacactgaggaagcatttgta
gaccccattcctttagtcaagtatgtgctctttgagtgttgcacagaact
cctgacacagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20502280_20503424
seq2: B6Ng01-280F02.b_49_1197 (reverse)

seq1  GCTGGATTTGTTATGAGCAAAGTGGCTTCA-GTAAGAATTCTGAAAG-AT  48
      |||||| ||||||||||||||||||| ||| ||||||| |||||||| ||
seq2  GCTGGAATTGTTATGAGCAAAGTGGCCTCAGGTAAGAA-TCTGAAAGAAT  49

seq1  GATGT-GCTCAGAATTATTTATCTCATTGTGGACTGATGCATGAAAAGAT  97
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  GATGTGGCTCAGAA-TATTTATCTCATTGTGGACTGATGCATGAAAAGAT  98

seq1  -GCCCTGGCTCTGTGCCCCTGTCAAAGAATTCACTTAGAAGAAATAGTGA  146
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCCCTGGCTCTGTGCCCCTGTCAAAGAATTCACTTAGAAGGAATAGTGA  148

seq1  CTGTACTAGCTTTTTAATCGCTGCATAGCTTCCCT-CCTGGGTACACAGG  195
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  CTGTACTAGC-TTTTAATCGCTGCATAGCTTCCCTCCCTGGGTACACAGG  197

seq1  CCTTGTAAAGAATT-GGTTAGAAATCTATAGTCAAT-AAAAAAGCTTGTG  243
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CCTTGTAAAGAATTGGGTTAGAAATCTATAGTCAATAAAAAAAGCTTGTG  247

seq1  CTTTTAAATCATTTTTACTTTACGAGCAGAAATCTTTCCACAAATTTTGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATCATTTTTACTTTACGAGCAGAAATCTTTCCACAAATTTTGC  297

seq1  TAGAAGTAAAATCTTCATGAAAAAAATCAAAGAAAACAAGGCTACAGTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAAAATCTTCATGAAAAAAATCAAAGAAAACAAGGCTACAGTAA  347

seq1  ATTGCTTTAGTTTTTTTCCTGGGTAGGATTATGTTTTACATTTTTATTGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAGTTTTTTTCCTGGGTAGGATTATGTTTTACATTTTTATTGT  397

seq1  TTCTCCCAAGCATGAATGTTTACCAAATATTTTATGGTTAATTGGTTCCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAAGCATGAATGTTTACCAAATATTTTATGGTTAATTGGTTCCT  447

seq1  ATCTAAGGTTAAGTTCAGTGTTAAATCGCGATGATTACAGGAACTGAAAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGGTTAAGTTCAGTGTTAAATCGCGATGATTACAGGAACTGAAAC  497

seq1  TAGAACATGAGGGATATTCTTTCAGTTGAGGCTTGAGTACCTCAACTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATGAGGGATATTCTTTCAGTTGAGGCTTGAGTACCTCAACTTTA  547

seq1  CAATACCAACTTTAGAAAGAGTAAAGTAGCCCACTTCCCGTGTCCATTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAACTTTAGAAAGAGTAAAGTAGCCCACTTCCCGTGTCCATTCA  597

seq1  TAGGTAGGTTGCATCATTCATTAAAAAAAATAAAATAATATGAGGGCCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGTTGCATCATTCATTAAAAAAAATAAAATAATATGAGGGCCTG  647

seq1  CGCTGCCACTCACCGGGGTCCAAGCCTTCTTCTGGTACCATGCTTGTGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCACTCACCGGGGTCCAAGCCTTCTTCTGGTACCATGCTTGTGAA  697

seq1  GGTAAGATAATACAGATTTAGTGATATGAGAATCCTCAGGCAGTCCCTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATAATACAGATTTAGTGATATGAGAATCCTCAGGCAGTCCCTTA  747

seq1  TCTCATTTTATCTCAATTTATTCATGTTATCTTAGCTTAGCTTAGAACAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTATCTCAATTTATTCATGTTATCTTAGCTTAGCTTAGAACAG  797

seq1  AGAACTAATGAGAGATTTCACCTGATGGAGGGCTGGGGCTAATATCTGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAATGAGAGATTTCACCTGATGGAGGGCTGGGGCTAATATCTGTT  847

seq1  AACATCATCCCATAAACTGGTTGTGCAGATGGGTAGTTTGAGACTGTCGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATCCCATAAACTGGTTGTGCAGATGGGTAGTTTGAGACTGTCGT  897

seq1  TCATTGGTTTCTGGGAGGATGTCTGGGTAGTGAGATGCTGGGGGATAGGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTTTCTGGGAGGATGTCTGGGTAGTGAGATGCTGGGGGATAGGG  947

seq1  AATCTTAATTGTTAATGTTTTAGCTATAGTTTCATATACATATCTGCAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAATTGTTAATGTTTTAGCTATAGTTTCATATACATATCTGCAAT  997

seq1  CCCAGAATCTGCCATGACGGTCATTCCAGAAACTTTTTTTGGGTGTGGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATCTGCCATGACGGTCATTCCAGAAACTTTTTTTGGGTGTGGGA  1047

seq1  GGGGGCTTCTACTGTGTTAGCAATTGCTAAAAGAGAAAGCAAGTGAGGCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTTCTACTGTGTTAGCAATTGCTAAAAGAGAAAGCAAGTGAGGCT  1097

seq1  ACAAGAAGGAACCTGTTCAAAATCATATAGCTTAGTTGAGGATATTGAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGGAACCTGTTCAAAATCATATAGCTTAGTTGAGGATATTGAAT  1147

seq1  TC  1145
      ||
seq2  TC  1149

seq1: chr13_20348241_20348841
seq2: B6Ng01-280F02.g_67_667

seq1  GAATTCAGCAGCTTGTGGGATGCCCTGATACTTTATGGTTCCTTTGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGCTTGTGGGATGCCCTGATACTTTATGGTTCCTTTGAACA  50

seq1  CATCTGTGCCATTGCTGAGCTGGTAATCCATATACTTTCTAGTGTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGCCATTGCTGAGCTGGTAATCCATATACTTTCTAGTGTTCCTA  100

seq1  GGAATAGTGATATATTCCAGGGGCTCTCTCTAAACTGTGAAATTAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTGATATATTCCAGGGGCTCTCTCTAAACTGTGAAATTAATAAT  150

seq1  TCTCGACTAACTTGTTGGGCTGAGATTATTTTTCATAAATTTAGCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGACTAACTTGTTGGGCTGAGATTATTTTTCATAAATTTAGCTTTTT  200

seq1  TAAATAAAAGGATGTTTTTATAATCATTTAGTGATATGGAAAGCCCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGGATGTTTTTATAATCATTTAGTGATATGGAAAGCCCTTGT  250

seq1  GTATTATCTTTAAAATATCATGTATCCAATCATCCCATCCTTTGCCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCTTTAAAATATCATGTATCCAATCATCCCATCCTTTGCCAGGT  300

seq1  GCTGTGTGCATATGTGTTGTGTAGAAGTTGCTACTGTAGTGTCAGAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGCATATGTGTTGTGTAGAAGTTGCTACTGTAGTGTCAGAGTAA  350

seq1  ACCTCATTGCTCAAATGGTTTTCGCTTCCCTGAACTGGAGCTGCTGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTGCTCAAATGGTTTTCGCTTCCCTGAACTGGAGCTGCTGCCTC  400

seq1  TTCTGAGTACTGTGAGATTGTGGTGGAAATGACTGTGCACGGTGACTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTACTGTGAGATTGTGGTGGAAATGACTGTGCACGGTGACTGAT  450

seq1  GGCTCTGTGGCTTTGGAGTTGTTGACGCGCACACTGAGGAAGCATTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGGCTTTGGAGTTGTTGACGCGCACACTGAGGAAGCATTTGTA  500

seq1  GACCCCATTCCTTTAGTCAAGTATGTGCTCTTTGAGTGTTGCACAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATTCCTTTAGTCAAGTATGTGCTCTTTGAGTGTTGCACAGAACT  550

seq1  CCTGACACAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  600

seq1  G  601
      |
seq2  G  601