BAC Information

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BAC

Clone NameB6Ng01-280L07
Chromosome13 (Build37)
Map Location 85,169,184 - 85,298,272
singlet/doubletdoublet
Overlap geneLOC100042857, LOC100042862
Upstream geneLOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851
Downstream geneCcnh, Rasa1, LOC435373, LOC675662, Cox7c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L07.bB6Ng01-280L07.g
ACCGA080366GA080367
length1,0981,073
definitionB6Ng01-280L07.b B6Ng01-280L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,169,184 - 85,170,296)(85,297,181 - 85,298,272)
sequence
gaattcaaacatatgaatctatgattgtcattcctattcaaaccatcaca
attagtaatgtgaaaagacaagaagcatgaaaagtgcatacattaatttc
aatcagaactgcaaattagaacaagaagattaatatttttcccaacagac
aggaaaatatattgctgttaacttaagaaagggaagttctctttatcccc
tttccccagtattcatgctatccaatgaataaaggaagaaaaataggaaa
agtgtgaaatgccaccacattttcataagatctaaaaaaggcaaaagaaa
ccaatgactagaattccgactcaacgaagacaaatcatgtatcaactcct
ggaattaactcaatcactataaattcagatgccaaaaaaaaaaaaaaaaa
acacattaacatccaagacaatatgcctccactagaacccagtaatccta
ctacagtaagccctgagaaatgtaatgtagctgaaacacaagacaaggat
ttcaaaatagtgattatgaatatgtacaaagaacataaagagaatgtaag
caaatccttcaaagaagtgtgttgtatgaaatatttaaaaagcaatcctt
actatgctggcagtgcaccagtgggcaggctttctgacccagagctcctg
tggtgggtcattgccatgccagccacatgcttccaaattcccgtggctgt
ctggggtaccctgccaccataccttttctagggaactcaattgagtcact
gcatgaaagaaaacaccacacaatcttaggttagaatcaaaagggaacaa
aattactgggcacaacaactagcatcctaatgtgtaaggcattctaagtt
aaattctccagtagcagatcccaaaggatctaccacctgaacgggggcca
ctaccttcattttgaatttgatcactccctgtccaaaaagaagtatctgt
ctcctgtctcctctctcctcttactgaaacagaagtcctgcctacttctg
cccagtgatggtctcctgaatcttattcataagggggggggtctgtccac
caatgtataaatacaacagtaaatgaaatgatgaaaagttggagtcaa

gaattctggagtttgacaaaattaagcggattcttactttggcagtcact
aagtgcactgtgttagcaaacctgttgcttatatctttttgtacccacac
tgacttttgttcttcagaaaaactgcaacttcatctttttcttgaaatat
cttaaagccttggtttctcttggatacatattgtaaaaatgtacacggct
ctaacaaaaattttgtgattatttaaattcatctatagaggactgatgga
gaatctagggggaaaagtgaggttctcatactatttgttaattcttcttc
tctttccttttctaattataaaagaccaaattagaaaatgttttacatta
tataatgtagacgaaggatgacgattaaaaggaaggcatagcatacatta
gaaaagataagaccttgagcttgtgagacgagtcagtgggggaaagtgct
gtccagtgcaaaggcaatgatctgagttcagttccgggaaccctcataaa
tatggaaggggaaaactgatattacagagttgtcctgtgactatcacatg
catgctgtggtggactcccatatgtaaacacttaggacatacacagaaac
aatgaaacttaaatagaaagcaaaacccaaacccacaaacaaactaaaag
caaggcattgtgtgtgtttaaattgttatttatgcattttagactcattc
atggaaatggtgatacccataaaattcctctgcatatggtgtgtttgata
aagtgtcgtaggcccaatatggtcatagcctttactgtggcatcaaaact
gttaaaaaacagtttaaaaattggcattaaataagttaagaaaatttaaa
gaaatgtagagtgaatttccaatgtgtcggttacaaatgaattctatagt
gttaaggaaaagcaccccagagtttctatagaccctaaatgcctcctggg
aaatgtttatttctcccttttttttttttttttgccttttgttgttactt
tgaactataatatataagcaagatttgttttttaatccagacaaggcatt
gtgaataaaggtatccccaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_85169184_85170296
seq2: B6Ng01-280L07.b_51_1148

seq1  GAATTCAAACATATGAATCTATGATTGTCATTCCTATTCAAACCATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATATGAATCTATGATTGTCATTCCTATTCAAACCATCACA  50

seq1  ATTAGTAATGTGAAAAGACAAGAAGCATGAAAAGTGCATACATTAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAATGTGAAAAGACAAGAAGCATGAAAAGTGCATACATTAATTTC  100

seq1  AATCAGAACTGCAAATTAGAACAAGAAGATTAATATTTTTCCCAACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACTGCAAATTAGAACAAGAAGATTAATATTTTTCCCAACAGAC  150

seq1  AGGAAAATATATTGCTGTTAACTTAAGAAAGGGAAGTTCTCTTTATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATATATTGCTGTTAACTTAAGAAAGGGAAGTTCTCTTTATCCCC  200

seq1  TTTCCCCAGTATTCATGCTATCCAATGAATAAAGGAAGAAAAATAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGTATTCATGCTATCCAATGAATAAAGGAAGAAAAATAGGAAA  250

seq1  AGTGTGAAATGCCACCACATTTTCATAAGATCTAAAAAAGGCAAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAATGCCACCACATTTTCATAAGATCTAAAAAAGGCAAAAGAAA  300

seq1  CCAATGACTAGAATTCCGACTCAACGAAGACAAATCATGTATCAACTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACTAGAATTCCGACTCAACGAAGACAAATCATGTATCAACTCCT  350

seq1  GGAATTAACTCAATCACTATAAATTCAGATGCCAAAAAAAAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAACTCAATCACTATAAATTCAGATGCCAAAAAAAAAAAAAAAAA  400

seq1  ACACATTAACATCCAAGACAATATGCCTCCACTAGAACCCAGTAATCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAACATCCAAGACAATATGCCTCCACTAGAACCCAGTAATCCTA  450

seq1  CTACAGTAAGCCCTGAGAAATGTAATGTAGCTGAAACACAAGACAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTAAGCCCTGAGAAATGTAATGTAGCTGAAACACAAGACAAGGAT  500

seq1  TTCAAAATAGTGATTATGAATATGTACAAAGAACATAAAGAGAATGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAGTGATTATGAATATGTACAAAGAACATAAAGAGAATGTAAG  550

seq1  CAAATCCTTCAAAGAAGTGTGTTGTATGAAATATTTAAAAAGCAATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTTCAAAGAAGTGTGTTGTATGAAATATTTAAAAAGCAATCCTT  600

seq1  ACTATGCTGGCAGTGCACCAGTGGGCAGGCTTTCTGACCCAGAGCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCTGGCAGTGCACCAGTGGGCAGGCTTTCTGACCCAGAGCTCCTG  650

seq1  TGGTGGGTCATTGCCATGCCAGCCACATGCTTCCAAATTCCCGTGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTCATTGCCATGCCAGCCACATGCTTCCAAATTCCCGTGGCTGT  700

seq1  CTGGGGTACCCTGCCACCATACCTTTTCTAGGGAACTCAATTGAGTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTACCCTGCCACCATACCTTTTCTAGGGAACTCAATTGAGTCACT  750

seq1  GCATGAAAGAAAACACCACACAATCTTAGGTTAGAATCAAAAGGGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGAAAACACCACACAATCTTAGGTTAGAATCAAAAGGGAACAA  800

seq1  AATTACTGGGCACAACAACTAGCATCCTAATGTGTAAGGCATTCTAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGGGCACAACAACTAGCATCCTAATGTGTAAGGCATTCTAAGTT  850

seq1  AAATTCTCCAGTAGCAGATCCCAAAGGATCTACCACCTGAACGGGGGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCAGTAGCAGATCCCAAAGGATCTACCACCTGAACGGGGGCCA  900

seq1  CTACCTTCATTTTGAATTTGATCAACTCCCTGTCCAAAAAGAAGTATCTG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTACCTTCATTTTGAATTTGATC-ACTCCCTGTCCAAAAAGAAGTATCTG  949

seq1  TCTCCTGTCTCCTCTCTTCCTCTTACTGACACAGAAGTCCTGCCTACTTC  1000
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TCTCCTGTCTCCTCTC-TCCTCTTACTGAAACAGAAGTCCTGCCTACTTC  998

seq1  TTGCCCAGTGATTGGTCTCCTGAAATCTTAATTCATAAGGGGGGGGGGTC  1050
       |||||||||| |||||||||| |||||| |||||||| |||||||||||
seq2  -TGCCCAGTGA-TGGTCTCCTG-AATCTT-ATTCATAA-GGGGGGGGGTC  1043

seq1  TGTCACACAAATGTATAAAAATACAAACAGTAAAATGAAATGATGAAAAA  1100
      |||| ||| |||||||  |||||| |||||| ||||||||||||| ||||
seq2  TGTC-CACCAATGTAT--AAATAC-AACAGT-AAATGAAATGATG-AAAA  1087

seq1  GTTGGAAAGTCAA  1113
      |||||  ||||||
seq2  GTTGG--AGTCAA  1098


seq1: chr13_85297181_85298272
seq2: B6Ng01-280L07.g_68_1140 (reverse)

seq1  GGATTGGGGGTGATACTTTTATTTCACAATGCTTTGTCTGGGATTTAAAA  50
      ||||||||   ||||| |||| |||||||||| |||||| |||||   ||
seq2  GGATTGGG---GATACCTTTA-TTCACAATGCCTTGTCT-GGATT---AA  42

seq1  AAAACATATCTTTTGCTTATATATTATAGTTTCAAAAGTAAAACAAAACA  100
      |||||| |||  |||||||||||||||||||   |||||  |||||    
seq2  AAAACAAATC--TTGCTTATATATTATAGTT--CAAAGT--AACAA---C  83

seq1  AAAAGGCAAAAAAAAAAAAAAAAAGGGAGAAATAAACCATTTCCCAGGAG  150
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAGGC-AAAAAAAAAAAAAAAAGGGAGAAATAAA-CATTTCCCAGGAG  131

seq1  GCATTTTAGGGTCTATAGAAACTCTGGGGTGCTTTTCCTTAACACTATAG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TTTAGGGTCTATAGAAACTCTGGGGTGCTTTTCCTTAACACTATAG  180

seq1  AATTCATTTGTAACCGACACATTGGAAATTCACTCTACATTTCTTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTTGTAACCGACACATTGGAAATTCACTCTACATTTCTTTAAAT  230

seq1  TTTCTTAACTTATTTAATGCCAATTTTT-AACTGTTTTTTAACAGTTTTG  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTTAACTTATTTAATGCCAATTTTTAAACTGTTTTTTAACAGTTTTG  280

seq1  ATGCCACAGTAAAGGCTATGACCATATTGGGCCTACGACACTTTATCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACAGTAAAGGCTATGACCATATTGGGCCTACGACACTTTATCAAA  330

seq1  CACACCATATGCAGAGGAATTTTATGGGTATCACCATTTCCATGAATGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATATGCAGAGGAATTTTATGGGTATCACCATTTCCATGAATGAG  380

seq1  TCTAAAATGCATAAATAACAATTTAAACACACACAATGCCTTGCTTTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGCATAAATAACAATTTAAACACACACAATGCCTTGCTTTTAG  430

seq1  TTTGTTTGTGGGTTTGGGTTTTGCTTTCTATTTAAGTTTCATTGTTTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTGGGTTTGGGTTTTGCTTTCTATTTAAGTTTCATTGTTTCTG  480

seq1  TGTATGTCCTAAGTGTTTACATATGGGAGTCCACCACAGCATGCATGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCCTAAGTGTTTACATATGGGAGTCCACCACAGCATGCATGTGA  530

seq1  TAGTCACAGGACAACTCTGTAATATCAGTTTTCCCCTTCCATATTTATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGGACAACTCTGTAATATCAGTTTTCCCCTTCCATATTTATGA  580

seq1  GGGTTCCCGGAACTGAACTCAGATCATTGCCTTTGCACTGGACAGCACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCCGGAACTGAACTCAGATCATTGCCTTTGCACTGGACAGCACTT  630

seq1  TCCCCCACTGACTCGTCTCACAAGCTCAAGGTCTTATCTTTTCTAATGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACTGACTCGTCTCACAAGCTCAAGGTCTTATCTTTTCTAATGTA  680

seq1  TGCTATGCCTTCCTTTTAATCGTCATCCTTCGTCTACATTATATAATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCCTTCCTTTTAATCGTCATCCTTCGTCTACATTATATAATGTA  730

seq1  AAACATTTTCTAATTTGGTCTTTTATAATTAGAAAAGGAAAGAGAAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTCTAATTTGGTCTTTTATAATTAGAAAAGGAAAGAGAAGAAG  780

seq1  AATTAACAAATAGTATGAGAACCTCACTTTTCCCCCTAGATTCTCCATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAATAGTATGAGAACCTCACTTTTCCCCCTAGATTCTCCATCA  830

seq1  GTCCTCTATAGATGAATTTAAATAATCACAAAATTTTTGTTAGAGCCGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTATAGATGAATTTAAATAATCACAAAATTTTTGTTAGAGCCGTG  880

seq1  TACATTTTTACAATATGTATCCAAGAGAAACCAAGGCTTTAAGATATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTACAATATGTATCCAAGAGAAACCAAGGCTTTAAGATATTTC  930

seq1  AAGAAAAAGATGAAGTTGCAGTTTTTCTGAAGAACAAAAGTCAGTGTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGATGAAGTTGCAGTTTTTCTGAAGAACAAAAGTCAGTGTGGG  980

seq1  TACAAAAAGATATAAGCAACAGGTTTGCTAACACAGTGCACTTAGTGACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGATATAAGCAACAGGTTTGCTAACACAGTGCACTTAGTGACT  1030

seq1  GCCAAAGTAAGAATCCGCTTAATTTTGTCAAACTCCAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTAAGAATCCGCTTAATTTTGTCAAACTCCAGAATTC  1073


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