BAC Information

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BAC

Clone NameB6Ng01-280M05
Chromosome13 (Build37)
Map Location 35,587,676 - 35,770,230
singlet/doubletdoublet
Overlap geneCdyl
Upstream gene1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneRpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M05.bB6Ng01-280M05.g
ACCGA080409GA080410
length1,081957
definitionB6Ng01-280M05.b B6Ng01-280M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,587,676 - 35,588,710)(35,769,273 - 35,770,230)
sequence
gaattcacttgtagaatagcaactctcaactctcgaagcgtttgctcaaa
ttccgtggtccaattctgtaacatataacgaaacaaagtttttgacaaat
ttgctgctcttgtagaattttcaaactgaacagaagtaacacaaaggcca
ggcatcttgcattcacagcctaaatgagccaactgccaaagaatatctac
ttgctcttggactaggtcgatgcgttgatttatcaacatcaaccctcctt
gtatctgtgagttggctgtggcctgtttatctaaggccgttgtgactgtc
atagaaagctcgttaatagtttctattgtttgaacagtagtagatagagc
gagtgctgaggccgtgacagaggctgcaaccgccgctgtggccaccagtc
caactatgatagcagaaataccaaaatctcttttcccttgaaacaaagtc
aagctattaggggcatctacaggaacaggaacaaatctaggcatgtgggt
aaccaaagcaaaaggatatttcttagcatcccagcataaggcataaaaac
atttttcttgtgagctatctatctctatctgattctgatttaagcttgtg
ttacttaccacccacaaaaacgggggccatacacataccggggtggcggt
aaaatttacctctttctgttttttatatctaacattggaggtggtccata
gtactaaaatcatatccagcaaaagtatcattatactctctactaatata
tggggtaaaggaaaaattatttctctactgcccaagtatatttttcagct
tggcaacctgttcaaggtaacattacatcttccatggaccctttccttgc
aaagggtgccattctaggttgtgaaggcggcttatttctagatcttccac
cttttcggctggaccaccatcctcttataactatggcatcagctttcatg
tcacaagccgctccgtcatagaggcctttttagcaggctgctgattacta
tacaacgctatacattgagctctagtctgtactgaggaatttacataaag
cacaggctttctgctaggaagagttctattt
gaattctttgacaagtcttcagggagaaggattttctctttaatgatcag
aaatctgagactcatggacaggggtaaagaagaaactccattttgggggg
tgttgaaactgttttgttccttgttttccagtgcctgtctcttgccatcc
atccatgtgtcagttcagccaatagtctgaacacagaacctcaaagtata
caatatgttgtatagccatttgctccctattcaaatgtttctgtctggaa
ggagaagttcaggtcatgtacaagactcagaaagttcagagagtcccacg
actatgtatcatacaggcagtcggataggagagaggagacgttccagagg
gctgagctgcctgcaagtttgcaggaagctcaagagatgtagcttcgggg
aatcatcgcctgagctgggctgggctttccagcgatgcagctgcctttga
gtcacccacacccttgtaagtaaccccaacaaactcactagtttgccctg
tggtagacttgggtgcaatcatttctttggtctgctgttggtgccctatc
taaggtaaacagatgtttgctcagatctcctcaggaaaaggcacacaata
agaaacaactgcaagtggtctagaaccaggaaggaaggtgaagaaaggct
gggcatgggaaaggaggaaaaggacagattctgggagagtccaaggccag
ggacaagggggcagacccaggggtttagcctgaggtgaagtccaactaag
cagagaagctaggggactgttcggctgggtagtggctcagactgtgtcta
atcttatacaaacaagtctcgctttacagggtgtgtccagagatgaggga
agtaacacaccattcttggttagttcatgtgtatgaagtgataacactcc
aagagaagctgttgaaaaagaatgtgtgtgtgtatatgtatatatatata
tatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_35587676_35588710
seq2: B6Ng01-280M05.b_98_1125

seq1  CGTGGTCCAATTCTGTAACATATAACGAAACAAAGTTTTTGACAAATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCCAATTCTGTAACATATAACGAAACAAAGTTTTTGACAAATTTG  50

seq1  CTGCTCTTGTAGAATTTTCAAACTGAACAGAAGTAACACAAAGGCCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGTAGAATTTTCAAACTGAACAGAAGTAACACAAAGGCCAGGC  100

seq1  ATCTTGCATTCACAGCCTAAATGAGCCAACTGCCAAAGAATATCTACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCATTCACAGCCTAAATGAGCCAACTGCCAAAGAATATCTACTTG  150

seq1  CTCTTGGACTAGGTCGATGCGTTGATTTATCAACATCAACCCTCCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGACTAGGTCGATGCGTTGATTTATCAACATCAACCCTCCTTGTA  200

seq1  TCTGTGAGTTGGCTGTGGCCTGTTTATCTAAGGCCGTTGTGACTGTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTTGGCTGTGGCCTGTTTATCTAAGGCCGTTGTGACTGTCATA  250

seq1  GAAAGCTCGTTAATAGTTTCTATTGTTTGAACAGTAGTAGATAGAGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCGTTAATAGTTTCTATTGTTTGAACAGTAGTAGATAGAGCGAG  300

seq1  TGCTGAGGCCGTGACAGAGGCTGCAACCGCCGCTGTGGCCACCAGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGCCGTGACAGAGGCTGCAACCGCCGCTGTGGCCACCAGTCCAA  350

seq1  CTATGATAGCAGAAATACCAAAATCTCTTTTCCCTTGAAACAAAGTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATAGCAGAAATACCAAAATCTCTTTTCCCTTGAAACAAAGTCAAG  400

seq1  CTATTAGGGGCATCTACAGGAACAGGAACAAATCTAGGCATGTGGGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGGGCATCTACAGGAACAGGAACAAATCTAGGCATGTGGGTAAC  450

seq1  CAAAGCAAAAGGATATTTCTTAGCATCCCAGCATAAGGCATAAAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAAGGATATTTCTTAGCATCCCAGCATAAGGCATAAAAACATT  500

seq1  TTTCTTGTGAGCTATCTATCTCTATCTGATTCTGATTTAAGCTTGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGAGCTATCTATCTCTATCTGATTCTGATTTAAGCTTGTGTTA  550

seq1  CTTACCACCCACAAAAACGGGGGCCATACACATACCGGGGTGGCGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACCCACAAAAACGGGGGCCATACACATACCGGGGTGGCGGTAAA  600

seq1  ATTTACCTCTTTCTGTTTTTTATATCTAACATTGGAGGTGGTCCATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTCTTTCTGTTTTTTATATCTAACATTGGAGGTGGTCCATAGTA  650

seq1  CTAAAATCATATCCAGCAAAAGTATCATTATACTCTCTACTAATATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCATATCCAGCAAAAGTATCATTATACTCTCTACTAATATATGG  700

seq1  GGTAAAGGAAAAATTATTTCTCTACTGCCCAAGTATATTTTTCAGCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGAAAAATTATTTCTCTACTGCCCAAGTATATTTTTCAGCTTGG  750

seq1  CAACCTGTCCAAGGTAACATTACATCTTCCATGGACCC-TTCCTTGCAAA  799
      |||||||| ||||||||||||||||||||||||||||| |||||||| ||
seq2  CAACCTGTTCAAGGTAACATTACATCTTCCATGGACCCTTTCCTTGC-AA  799

seq1  AGGGTGCCATTCTAGGTTGTGAAGGCGGCTTATTTCTAGATCTTCCACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCCATTCTAGGTTGTGAAGGCGGCTTATTTCTAGATCTTCCACCT  849

seq1  TTTCGGCTGGGCCACCATCCTCTTATAACTATGGCATCAGCCTTCATGTC  899
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TTTCGGCTGGACCACCATCCTCTTATAACTATGGCATCAGCTTTCATGTC  899

seq1  AAAAGCCGCTCCGCCAAAAGAGGCCCTTTTTAACCAGGCTGCTGATTAAT  949
      | ||||||||||| | | |||||||  |||| | ||||||||||||| | 
seq2  ACAAGCCGCTCCGTC-ATAGAGGCC--TTTTTAGCAGGCTGCTGATT-AC  945

seq1  TATACAAGGCTATACATTGA-CTCTTATCTTGTACCGAGGAAATTAACAT  998
      ||||||| |||||||||||| ||||  || ||||| |||| |||| ||||
seq2  TATACAACGCTATACATTGAGCTCTAGTC-TGTACTGAGG-AATTTACAT  993

seq1  AAAGCACAGGCTTTCCTGTAGGAAGAAGGTTCTATTT  1035
      |||||||||||||||   ||||||||  |||||||||
seq2  AAAGCACAGGCTTTCTGCTAGGAAGA--GTTCTATTT  1028

seq1: chr13_35769273_35770230
seq2: B6Ng01-280M05.g_70_1026 (reverse)

seq1  ACATATATATATATATATACATATACACACACACATTTCTTTTTCAACAG  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACATATATATATATATATACATATACACACACACA-TTCTTTTTCAACAG  49

seq1  CTTCTCTTGGAGTGTTATCACTTCATACACATGAACTAACCAAGAATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGGAGTGTTATCACTTCATACACATGAACTAACCAAGAATGGT  99

seq1  GTGTTACTTCCCTCATCTCTGGACACACCCTGTAAAGCGAGGCTTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGTTACTTCCCTCATCTCTGGACACACCCTGTAAAGCGAGACTTGTTTG  149

seq1  TATAAGATTAGACACAGTCTGAGCCACTACCCAGCCGAACAGTCCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTAGACACAGTCTGAGCCACTACCCAGCCGAACAGTCCCCTAG  199

seq1  CTTCTCTGCTTAGTTGGACTTCACCTCAGGCTAAACCCCTGGGTCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCTTAGTTGGACTTCACCTCAGGCTAAACCCCTGGGTCTGCCC  249

seq1  CCTTGTCCCTGGCCTTGGACTCTCCCAGAATCTGTCCTTTTCCTCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCCTGGCCTTGGACTCTCCCAGAATCTGTCCTTTTCCTCCTTTC  299

seq1  CCATGCCCAGCCTTTCTTCACCTTCCTTCCTGGTTCTAGACCACTTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCAGCCTTTCTTCACCTTCCTTCCTGGTTCTAGACCACTTGCAG  349

seq1  TTGTTTCTTATTGTGTGCCTTTTCCTGAGGAGATCTGAGCAAACATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTATTGTGTGCCTTTTCCTGAGGAGATCTGAGCAAACATCTGT  399

seq1  TTACCTTAGATAGGGCACCAACAGCAGACCAAAGAAATGATTGCACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGATAGGGCACCAACAGCAGACCAAAGAAATGATTGCACCCAA  449

seq1  GTCTACCACAGGGCAAACTAGTGAGTTTGTTGGGGTTACTTACAAGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCACAGGGCAAACTAGTGAGTTTGTTGGGGTTACTTACAAGGGTG  499

seq1  TGGGTGACTCAAAGGCAGCTGCATCGCTGGAAAGCCCAGCCCAGCTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACTCAAAGGCAGCTGCATCGCTGGAAAGCCCAGCCCAGCTCAGG  549

seq1  CGATGATTCCCCGAAGCTACATCTCTTGAGCTTCCTGCAAACTTGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGATTCCCCGAAGCTACATCTCTTGAGCTTCCTGCAAACTTGCAGGC  599

seq1  AGCTCAGCCCTCTGGAACGTCTCCTCTCTCCTATCCGACTGCCTGTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCCCTCTGGAACGTCTCCTCTCTCCTATCCGACTGCCTGTATGA  649

seq1  TACATAGTCGTGGGACTCTCTGAACTTTCTGAGTCTTGTACATGACCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTCGTGGGACTCTCTGAACTTTCTGAGTCTTGTACATGACCTGA  699

seq1  ACTTCTCCTTCCAGACAGAAACATTTGAATAGGGAGCAAATGGCTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTTCCAGACAGAAACATTTGAATAGGGAGCAAATGGCTATACA  749

seq1  ACATATTGTATACTTTGAGGTTCTGTGTTCAGACTATTGGCTGAACTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTATACTTTGAGGTTCTGTGTTCAGACTATTGGCTGAACTGAC  799

seq1  ACATGGATGGATGGCAAGAGACAGGCACTGGAAAACAAGGAACAAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGGATGGCAAGAGACAGGCACTGGAAAACAAGGAACAAAACAG  849

seq1  TTTCAACACCCCCCAAAATGGAGTTTCTTCTTTACCCCTGTCCATGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACACCCCCCAAAATGGAGTTTCTTCTTTACCCCTGTCCATGAGTC  899

seq1  TCAGATTTCTGATCATTAAAGAGAAAATCCTTCTCCCTGAAGACTTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTCTGATCATTAAAGAGAAAATCCTTCTCCCTGAAGACTTGTCA  949

seq1  AAGAATTC  958
      ||||||||
seq2  AAGAATTC  957