BAC Information

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BAC

Clone NameB6Ng01-282H13
Chromosome13 (Build37)
Map Location 60,290,420 - 60,433,281
singlet/doubletdoublet
Overlap geneEG328264
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282H13.bB6Ng01-282H13.g
ACCGA081680GA081681
length751755
definitionB6Ng01-282H13.b B6Ng01-282H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,432,531 - 60,433,281)(60,290,420 - 60,291,165)
sequence
gaattctggaaaactgtagaaaagtgccagaaaaggaaaaacgttccaat
ggtcacatgtgtatggacgtctcctggaaaaagattgtttttaaaggtgt
atttaaaagatctaaattgactgcttggaggagctgaggattcgttcatg
tctgtgttgggctgttcctaggggccactgacttcaggcttagtgagagt
cccaagtccaaataagaagtctaccagctggccatataccacacacctca
cccatcagacccagagcctcccttcctacctcttgctcaaatgtaggttc
tcagttcccttcaagtccatgcagaatcgggtgagttagtcatctgggga
agtcattggtggcctttccccatcccctggtctttaggagagtttcaaag
tcctgctgaccagaatttggatgacggtctcctgtgtgacattctgcatt
ttatcctgagcgacaaactactaactgaggaggaggcactctactgtgac
actgtgtgatacttctatgctcttcaaatctcaatactctgccatctgtg
atatccttgactccagggtcagggctaagcaagattgtctgactgtctgt
tagaaaagcacacagttaaattcgggagcatgcttcacactgagtggaca
ttatgaccattgcaagccatgtctcatcaatactgctatgaagaggttaa
tagtccccctccctggctttgtgtgtagggtgtgtgtgtgtgtgtgtgtg
t
gaattcctagtcggctctgcttctggaattttccaccacttcccagctgt
accaaaatgctaaacggagagtggccctttaacacccgtgcttgtgggag
aattctagatccagggttcggtgagggtgaagccttcctaaaaggaatat
gtcttcagaagaaggagaagcagacgactgcacagcctggaagcagccat
cagagatcctgaacacactctggggggccgcttttctgaccttggctttt
aactgtgagaggtgtttcagttataccgacaccatagatgtcagagaccg
ttatttctattgagtcaaaagctctttggagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagctgtc
aagaggttgtgaatgcatgctatcaacaaagcaagatgggctaatgtgca
gcagggggcctggctgtggactcactaggacctacacttgggattctcta
aacactgccagtgattgagaaatgtctctagaatattctgttcatgtcct
ggtagtctttctgacagtaacagccagagagccaccagtggacacatccc
caccaggaccaataagaggaaaagatgtttgtgagtcaaatatgcctgga
tattttcatattgatttgagttttaataataaaacctggtgttttctggt
ttttgcctatattattgcatttttaatataggtagtagggttggtggggt
gggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60432531_60433281
seq2: B6Ng01-282H13.b_48_798 (reverse)

seq1  ACACACACACACACACACACACCCTACACACAAAGCCAGGGAGGGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACCCTACACACAAAGCCAGGGAGGGGGACT  50

seq1  ATTAACCTCTTCATAGCAGTATTGATGAGACATGGCTTGCAATGGTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTCTTCATAGCAGTATTGATGAGACATGGCTTGCAATGGTCATA  100

seq1  ATGTCCACTCAGTGTGAAGCATGCTCCCGAATTTAACTGTGTGCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCACTCAGTGTGAAGCATGCTCCCGAATTTAACTGTGTGCTTTTCT  150

seq1  AACAGACAGTCAGACAATCTTGCTTAGCCCTGACCCTGGAGTCAAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGTCAGACAATCTTGCTTAGCCCTGACCCTGGAGTCAAGGATA  200

seq1  TCACAGATGGCAGAGTATTGAGATTTGAAGAGCATAGAAGTATCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGGCAGAGTATTGAGATTTGAAGAGCATAGAAGTATCACACAG  250

seq1  TGTCACAGTAGAGTGCCTCCTCCTCAGTTAGTAGTTTGTCGCTCAGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGTAGAGTGCCTCCTCCTCAGTTAGTAGTTTGTCGCTCAGGATA  300

seq1  AAATGCAGAATGTCACACAGGAGACCGTCATCCAAATTCTGGTCAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAATGTCACACAGGAGACCGTCATCCAAATTCTGGTCAGCAGG  350

seq1  ACTTTGAAACTCTCCTAAAGACCAGGGGATGGGGAAAGGCCACCAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAACTCTCCTAAAGACCAGGGGATGGGGAAAGGCCACCAATGAC  400

seq1  TTCCCCAGATGACTAACTCACCCGATTCTGCATGGACTTGAAGGGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGATGACTAACTCACCCGATTCTGCATGGACTTGAAGGGAACTG  450

seq1  AGAACCTACATTTGAGCAAGAGGTAGGAAGGGAGGCTCTGGGTCTGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTACATTTGAGCAAGAGGTAGGAAGGGAGGCTCTGGGTCTGATGG  500

seq1  GTGAGGTGTGTGGTATATGGCCAGCTGGTAGACTTCTTATTTGGACTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGTGTGGTATATGGCCAGCTGGTAGACTTCTTATTTGGACTTGG  550

seq1  GACTCTCACTAAGCCTGAAGTCAGTGGCCCCTAGGAACAGCCCAACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCACTAAGCCTGAAGTCAGTGGCCCCTAGGAACAGCCCAACACAG  600

seq1  ACATGAACGAATCCTCAGCTCCTCCAAGCAGTCAATTTAGATCTTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACGAATCCTCAGCTCCTCCAAGCAGTCAATTTAGATCTTTTAAA  650

seq1  TACACCTTTAAAAACAATCTTTTTCCAGGAGACGTCCATACACATGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTTAAAAACAATCTTTTTCCAGGAGACGTCCATACACATGTGAC  700

seq1  CATTGGAACGTTTTTCCTTTTCTGGCACTTTTCTACAGTTTTCCAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAACGTTTTTCCTTTTCTGGCACTTTTCTACAGTTTTCCAGAATT  750

seq1  C  751
      |
seq2  C  751

seq1: chr13_60290420_60291165
seq2: B6Ng01-282H13.g_69_823

seq1  GAATTCCTAGTCGGCTCTGCTTCTGGAATTTTCCACCACTTCCCAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTCGGCTCTGCTTCTGGAATTTTCCACCACTTCCCAGCTGT  50

seq1  ACCAAAATGCTAAACGGAGAGTGGCCCTTTAACACCCGTGCTTGTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATGCTAAACGGAGAGTGGCCCTTTAACACCCGTGCTTGTGGGAG  100

seq1  AATTCTAGATCCAGGGTTCGGTGAGGGTGAAGCCTTCCTAAAAGGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGATCCAGGGTTCGGTGAGGGTGAAGCCTTCCTAAAAGGAATAT  150

seq1  GTCTTCAGAAGAAGGAGAAGCAGACGACTGCACAGCCTGGAAGCAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGAAGAAGGAGAAGCAGACGACTGCACAGCCTGGAAGCAGCCAT  200

seq1  CAGAGATCCTGAACACACTCTGGGGGGCCGCTTTTCTGACCTTGGCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCCTGAACACACTCTGGGGGGCCGCTTTTCTGACCTTGGCTTTT  250

seq1  AACTGTGAGAGGTGTTTCAGTTATACCGACACCATAGATGTCAGAGACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAGAGGTGTTTCAGTTATACCGACACCATAGATGTCAGAGACCG  300

seq1  TTATTTCTATTGAGTCAAAAGCTCTTTGGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTATTGAGTCAAAAGCTCTTTGGAGAGAGAGAGAGAGAGAGAGA  350

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTC  400

seq1  AAGAGGTTGTGAATGCATGCTATCAACAAAGCAAGATGGGCTAATGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGTGAATGCATGCTATCAACAAAGCAAGATGGGCTAATGTGCA  450

seq1  GCAGGGGGCCTGGCTGTGGACTCACTAGGACCTACACTTGGGATTCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGGCCTGGCTGTGGACTCACTAGGACCTACACTTGGGATTCTCTA  500

seq1  AACACTGCCAGTGATTGAGAAATGTCTCTAGAATATTCTGTTCATGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCCAGTGATTGAGAAATGTCTCTAGAATATTCTGTTCATGTCCT  550

seq1  GGTAGTCTTTCTGACAGTAACAGCCAGAGAGCCACCAGTGGACACATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTTTCTGACAGTAACAGCCAGAGAGCCACCAGTGGACACATCCC  600

seq1  CACCAGGACCAATAAGAGG-AAAGATGTTTGTGAGTC-AATATGCCTGGA  648
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CACCAGGACCAATAAGAGGAAAAGATGTTTGTGAGTCAAATATGCCTGGA  650

seq1  TATTTTCATATTGATTTGAG-TTTAATAATAAAACCTGGTG-TTTCTGG-  695
      |||||||||||||||||||| |||||||||||||||||||| ||||||| 
seq2  TATTTTCATATTGATTTGAGTTTTAATAATAAAACCTGGTGTTTTCTGGT  700

seq1  TTTTGCCTATATTATTGCATTTTT-ATATA-GTAGTAGG--TTGTGGGGT  741
      |||||||||||||||||||||||| ||||| ||||||||  | |||||||
seq2  TTTTGCCTATATTATTGCATTTTTAATATAGGTAGTAGGGTTGGTGGGGT  750

seq1  GGGTT  746
      |||||
seq2  GGGTT  755