BAC Information

Click to search

BAC

Clone NameB6Ng01-282H15
Chromosome13 (Build37)
Map Location 17,310,117 - 17,310,839
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282H15.bB6Ng01-282H15.g
ACCGA081684GA081685
length1,200730
definitionB6Ng01-282H15.b B6Ng01-282H15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattttttttttcccagaggcaagactaggcagaactctgctaca
tatgtgccagggtccttagaccagcctatctatgctcctggttggagttc
cccggggtctgggttagttcagactgctggtcttcctatgaggtctctct
ccccttcagcttcttcaatccttcccctaattcaaccacaatggcccctg
acttcagtccaatggttgggtataagtatctgtttctgtctcagtcaact
tctggtagggcctcccagaggatagccatgccaggctcctgtctgtaagc
acatcatagcatcagtaatagtgtcaggccttggagcccctcccaccccc
aggagagaaatcccaagttgagccagtcatttggctgcccttccttcact
ctcttttccatttttgtccctgtagttcttttagacaggaacaattcagg
gtcagaaattttgactgtgggttagtcaccctgtttctctaattgagtcc
ctgtctatcttctggaggtagatactttgagttccctttctccaatgttg
tgcattttgactaaggtcactcccaatgagtcctgaaagtgtctcacctc
ctgggtctctggtactttctatagggtcttcccacctcctactctcctag
gctgcttgtttctattcattcacttggccttctggacttctctcctgtcc
ccttctcccatacctgattctgtacccattttcccctccccctcttatcc
aagtccatcctttcctctccccttttaagtgggattggagcttcctcact
tgggcctttctgattattacactagttaaggtctgtaggttgtaacttag
gtattctgtactttttggctaatatccacttattagtgagtctatactgt
gcatgtccttttgggtctgagatacctcactcaggatgatattatccagt
ttccatccatttgcctgtaaactcaagatgtcctccttcttaagagctga
atagtattccactgtgtacatttttctgttatcccattcttccattgtgg
ggaacatatggagttgttcagcttccatgccttatcattagaataaaagg
ctgcttatgtaccatagtagaggcacatatcactgccatctgatatctct
ctgggtgcgtacactagactcccgtgggtggggtgtcctctcacgtatag

gaattcactaaaccccagcactccagcactggaggtcaatgcatttgtca
gtcactcaacatgatgaaagaagatcgtgggtttgaagacaacccactac
aaagtgacactgtctgagaaagaaaagggggacaagtaaatacagcctca
aggatattttcacataaatagaaaaatggctaaattcttttcttctttgt
tctatttttgaggattatttgttttattatatatgtatatagattatata
tgtggaaaagttctccaactcaatcttctctaggaataagctataatcca
aagcatcataaattgtaactgcctatgctcattggtaactctggtgttta
ctcactatttagaacaaacaagtccctgaaatgtcattctttatggagtt
gaagttcgtcgtatatctttctaaattatctaattatctttctcaattat
tgttactctgtatcagagtttcacattgattctatctaaataggattctc
caactactagaaaattttattgattttttaagcaaaaaatagcttatcat
ttggcattataagctaataaaatccaaaacctgctcaccttttcctttat
gaatttgtcaactacattttcaattacaacttcctatttaaaagaaatgt
attccaaatttcattctaacatatacctattgaaaccttttctcagcgct
tttggttataccgtcaaaaaactatgccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17310117_17310839
seq2: B6Ng01-282H15.g_65_794

seq1  GAATTCACTAAACCCCAGCACTCCAGCACTGGAGGTCAATGCATTTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAACCCCAGCACTCCAGCACTGGAGGTCAATGCATTTGTCA  50

seq1  GTCACTCAACATGATGAAAGAAGATCGTGGGTTTGAAGACAACCCACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAACATGATGAAAGAAGATCGTGGGTTTGAAGACAACCCACTAC  100

seq1  AAAGTGACACTGTCTGAGAAAGAAAAGGGGGACAAGTAAATACAGCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACACTGTCTGAGAAAGAAAAGGGGGACAAGTAAATACAGCCTCA  150

seq1  AGGATATTTTCACATAAATAGAAAAATGGCTAAATTCTTTTCTTCTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTTCACATAAATAGAAAAATGGCTAAATTCTTTTCTTCTTTGT  200

seq1  TCTATTTTTGAGGATTATTTGTTTTATTATATATGTATATAGATTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTGAGGATTATTTGTTTTATTATATATGTATATAGATTATATA  250

seq1  TGTGGAAAAGTTCTCCAACTCAATCTTCTCTAGGAATAAGCTATAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAAGTTCTCCAACTCAATCTTCTCTAGGAATAAGCTATAATCCA  300

seq1  AAGCATCATAAATTGTAACTGCCTATGCTCATTGGTAACTCTGGTGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCATAAATTGTAACTGCCTATGCTCATTGGTAACTCTGGTGTTTA  350

seq1  CTCACTATTTAGAACAAACAAGTCCCTGAAATGTCATTCTTTATGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATTTAGAACAAACAAGTCCCTGAAATGTCATTCTTTATGGAGTT  400

seq1  GAAGTTCGTCGTATATCTTTCTAAATTATCTAATTATCTTTCTCAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCGTCGTATATCTTTCTAAATTATCTAATTATCTTTCTCAATTAT  450

seq1  TGTTACTCTGTATCAGAGTTTCACATTGATTCTATCTAAATAGGATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCTGTATCAGAGTTTCACATTGATTCTATCTAAATAGGATTCTC  500

seq1  CAACTACTAGAAAAATTTTATTGATTTTTTAAGCAAAAAAATAGCTTATC  550
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CAACTACTAG-AAAATTTTATTGATTTTTTAAGC-AAAAAATAGCTTATC  548

seq1  ATTTGGCATTATAAGCTAATAAAATCCAAAAACTGCTCACCTTTTCCTTT  600
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTGGCATTATAAGCTAATAAAATCCAAAACCTGCTCACCTTTTCCTTT  598

seq1  ATGAATTTGTCAACTACAATTTTCATTACAACTT-CTATTT-ATAGAAAT  648
      |||||||||||||||||| |||  |||||||||| |||||| | ||||||
seq2  ATGAATTTGTCAACTACATTTTCAATTACAACTTCCTATTTAAAAGAAAT  648

seq1  GTATTTCAGATTTCATTCAGACATATA-CTATTGAAAC--TTTCTCAGC-  694
      ||||| || |||||||||  ||||||| ||||||||||  ||||||||| 
seq2  GTATTCCAAATTTCATTCTAACATATACCTATTGAAACCTTTTCTCAGCG  698

seq1  CTTTT-GTTAT-CCGTCAAAGAAC-ATGCCAT  723
      ||||| ||||| |||||||| ||| |||||||
seq2  CTTTTGGTTATACCGTCAAAAAACTATGCCAT  730