BAC Information

Click to search

BAC

Clone NameB6Ng01-282O13
Chromosome13 (Build37)
Map Location 28,450,131 - 28,450,752
singlet/doubletsinglet
Overlap geneLOC100042393
Upstream genePrl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
Downstream geneLOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282O13.bB6Ng01-282O13.g
ACCGA082000GA082001
length1,032982
definitionB6Ng01-282O13.b B6Ng01-282O13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgagtgttctgatcatttccaggataaaaggtatgcttcagg
tccagtcttatcagacaaaatcctctggctatgctacaaatattccctcc
gtgtaccatataaaacagcacaagaccaagagattcaggtgagtgtaatt
ttctcatcaaatcaactgaaagagtcaactggctctgccaagctgcaggt
tgttacaggaagaagcaaaaacaaaccaaatcaccccccacttccctacc
cacccattcctatttttttggccctggcgttcccctgtactggggcatat
aaagtttgcaagtccaatgggcctctctttcctgtgatggccgactaggc
catcttttgatatatatgcagctagagtcaagagctccggggtactggtt
agttcataatgttgttccacctatagggttgcagatccctttagctcctt
gggtactttctctagctcctccattgggagccctgtgatccatccaatag
ctgactgtgagcatccacttctgtgtttgctaggccctggcacagtctca
caagagacagctacatctgggtcctttcgataaaatcttgctagtgtatg
caatggtgtcagcgtttggaagctgattatggggtggatccctggatatg
gcagtctctagatggtccatcctttcgtctcagctccaaactttgtctct
gtaactccttccatgggtgttttgttcccaattctagagaggggcatagt
gtccacacttcagtcttcattcttcttgagtttcatgtgtttagcaaatt
taccttatatcttgggaatcctaggtttggggctaatatccacttatcag
tgagtacatatttgtgtgagttcctttgtgaatgtgttacctcactcagg
atgatgccctccaggtccatccatttgcctaggaatttcataaattcatt
cttttaatagctgagtagtactccatgtgtaaatgtaccacattttctgt
atccattcctctgttgaggggcatctgggttc
gaattcaacacaccactttcatcaatggacagatcgtggaaacagaaact
aaacagggacacagtgaaactaacagaacttataaaacaaatgaatttaa
caaatatctacagagcattttatcctaaaacaaaaggatataccttcttc
ttagcacctcatggtaccttctccaaaattgaccatataactggtcacaa
aacaggcctcaacagatacaaaaatattgaaactgtcccatgcatcgtat
cagaccaccgtggactaaggctgatcttcaatagcaaaataaataataga
aagccaacattcatgtagaaactgaacaacactcttctcaatgatacctt
ggtcaaggaacaaataaagaaagaaattaaagactttttagagtttaatg
aaaatgaaaccacaacatacccaaactaatgggaaacaatgaaagcattt
ctaagaggggaaactcatagctctgagtgcctccaaaaagaaactagaga
cagcacacactaggaccttgacaacacacctaaaagctctagaagaaaag
gaagcaaattcacccaagaggagtagactgcaggaaataatcaaactcag
gggtgaaatcaaccaagtagaaataagaactattcaaagaatcatccaaa
cgaggaggtggttctttgagaaaatcaacaagatagataaaaccttagcc
agattcactagagggcacagggacagcatcctaattaacaaaatcagaca
tgaaaagggagacataacaacagatcatgaagaaatccaaaacaccatca
gatacttctacaaaaggctatactcaagaaaactggaaagcctggacgaa
atggacaaatttctacacagaaaccaggtaccaaagttaaatcagaatca
gttaacgatataaacagtcccatatcccctaagaatagaagcagcattat
agtctcccaaccaaaaaaaaaaaaaaaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28450131_28450752
seq2: B6Ng01-282O13.b_48_669 (reverse)

seq1  CTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGG  50

seq1  ACCCAGATGTAGCTGTCTCTTGTGAGACTGTGCCAGGGCCTAGCAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATGTAGCTGTCTCTTGTGAGACTGTGCCAGGGCCTAGCAAACAC  100

seq1  AGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCAAT  150

seq1  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAT  200

seq1  AGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTA  250

seq1  GCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACAGGAAAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACAGGAAAGAGAG  300

seq1  GCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGG  350

seq1  GCCAAAAAAATAGGAATGGGTGGGTAGGGAAGTGGGGGGTGATTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAAATAGGAATGGGTGGGTAGGGAAGTGGGGGGTGATTTGGTTT  400

seq1  GTTTTTGCTTCTTCCTGTAACAACCTGCAGCTTGGCAGAGCCAGTTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCTTCTTCCTGTAACAACCTGCAGCTTGGCAGAGCCAGTTGACT  450

seq1  CTTTCAGTTGATTTGATGAGAAAATTACACTCACCTGAATCTCTTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTTGATTTGATGAGAAAATTACACTCACCTGAATCTCTTGGTCT  500

seq1  TGTGCTGTTTTATATGGTACACGGAGGGAATATTTGTAGCATAGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTTTATATGGTACACGGAGGGAATATTTGTAGCATAGCCAGAG  550

seq1  GATTTTGTCTGATAAGACTGGACCTGAAGCATACCTTTTATCCTGGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTCTGATAAGACTGGACCTGAAGCATACCTTTTATCCTGGAAAT  600

seq1  GATCAGAACACTCAGTGAATTC  622
      ||||||||||||||||||||||
seq2  GATCAGAACACTCAGTGAATTC  622