BAC Information

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BAC

Clone NameB6Ng01-283E04
Chromosome13 (Build37)
Map Location 70,291,867 - 70,436,319
singlet/doubletdoublet
Overlap gene4930520P13Rik
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
Downstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283E04.bB6Ng01-283E04.g
ACCGA082267GA082268
length1,113225
definitionB6Ng01-283E04.b B6Ng01-283E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,291,867 - 70,292,980)(70,436,093 - 70,436,319)
sequence
gaattccatgattccatgatttctggtcagctatttatcagcatgcaaac
atatggtgtgtgtggtatttgccataaatagttccgctgaagttaagtaa
cggtgtgcaccacgggctcatgtgaggatgcagcgctagaatgacaacct
cactgaataattatactccacgtcagccagcatacacacaaccctttctc
taatgcaaacaaagcaccatggctctataattcctggctaaaaaaatgcg
accctggggctagaaagaaggcttatcagctgaaagcacttgctgttctt
cctatcctatcaggtggcccacagccttccagaactcagctccaagggat
ctgctgctctcttctgtcctatgctggcacctcccctcaaatgtgaatac
acacacacacacacacacacacacacacacgttgtcacacacacacacac
acgttgtcacacacacacacacacacacacacacacaaacatgcaaatca
attaagataaatttaaaaagacaaccttgtacagagttctatttgtagat
acactttaatcttcctctgggttttgattagtaataaggaattgtaccta
gcttgtctgaacccacatttattttgtaatatatctaacaagagaggggc
ttagcttttacaaattgttttcttcctctttctttttttttttttttttt
ttttttttgaagggaacgttgactcatcactagcagaaatataatgcgta
gggatttttatattttaaatcattgcaatggctaggggtgtaagtcaggg
tagaaggacttacatggcacgctacagcttttaatctctggcagtgagat
gaatggatgaatgatagatagatagatagatagatagatagatagataga
tagatgagatgtaaagaatgtttatgcatgtgggatgatttatttttatg
ggtccacttgacatggcccatacagtctctggatatccattattttatgg
tggtttctgccaatgacctgtggaatactgtaacaaacagtagtagagtt
agacagagagcttcataatgtagtgatctcatccatcgactgatgagcta
tactcgattcagc

caaagagagtcttactttgtagttctctgcttatctgattgttttgctaa
gtggcccttgactcagtatttcctggtggtggtggtagtagtgatatgta
tatgtgtgctgtgtgtatgtatctgtgtgtgagtatatgagtgtgtgtgt
gtgtgcatgtatttggtgtcatgtgtgagtaggtgtttggtgtgtgttat
gtccgtgtgtcttcgaactgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70291867_70292980
seq2: B6Ng01-283E04.b_45_1157

seq1  GAATTCCATGATTCCATGATTTCTGGTCAGCTATTTATCAGCATGCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATTCCATGATTTCTGGTCAGCTATTTATCAGCATGCAAAC  50

seq1  ATATGGTGTGTGTGGTATTTGCCATAAATAGTTCCGCTGAAGTTAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGTGTGTGGTATTTGCCATAAATAGTTCCGCTGAAGTTAAGTAA  100

seq1  CGGTGTGCACCACGGGCTCATGTGAGGATGCAGCGCTAGAATGACAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGCACCACGGGCTCATGTGAGGATGCAGCGCTAGAATGACAACCT  150

seq1  CACTGAATAATTATACTCCACGTCAGCCAGCATACACACAACCCTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATAATTATACTCCACGTCAGCCAGCATACACACAACCCTTTCTC  200

seq1  TAATGCAAACAAAGCACCATGGCTCTATAATTCCTGGCTAAAAAAATGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAACAAAGCACCATGGCTCTATAATTCCTGGCTAAAAAAATGCG  250

seq1  ACCCTGGGGCTAGAAAGAAGGCTTATCAGCTGAAAGCACTTGCTGTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGGCTAGAAAGAAGGCTTATCAGCTGAAAGCACTTGCTGTTCTT  300

seq1  CCTATCCTATCAGGTGGCCCACAGCCTTCCAGAACTCAGCTCCAAGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTATCAGGTGGCCCACAGCCTTCCAGAACTCAGCTCCAAGGGAT  350

seq1  CTGCTGCTCTCTTCTGTCCTATGCTGGCACCTCCCCTCAAATGTGAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTCTCTTCTGTCCTATGCTGGCACCTCCCCTCAAATGTGAATAC  400

seq1  ACACACACACACACACACACACACACACACGTTGTCACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACGTTGTCACACACACACACAC  450

seq1  ACGTTGTCACACACACACACACACACACACACACACAAACATGCAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTCACACACACACACACACACACACACACACAAACATGCAAATCA  500

seq1  ATTAAGATAAATTTAAAAAGACAACCTTGTACAGAGTTCTATTTGTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATAAATTTAAAAAGACAACCTTGTACAGAGTTCTATTTGTAGAT  550

seq1  ACACTTTAATCTTCCTCTGGGTTTTGATTAGTAATAAGGAATTGTACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAATCTTCCTCTGGGTTTTGATTAGTAATAAGGAATTGTACCTA  600

seq1  GCTTGTCTGAACCCACATTTATTTTGTAATATATCTAACAAGAGAGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTGAACCCACATTTATTTTGTAATATATCTAACAAGAGAGGGGC  650

seq1  TTAGCTTTTACAAATTGTTTTCTTCCTCTTTCTTTTTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTACAAATTGTTTTCTTCCTCTTTCTTTTTTTTTTTTTTTTTT  700

seq1  TTTTTTTTGAAGGGAACGTTGACTCATCACTAGCAGAAATATAATGCGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGAAGGGAACGTTGACTCATCACTAGCAGAAATATAATGCGTA  750

seq1  GGGATTTTTATATTTTAAATCATTGCAATGGCTAGGGGTGTAAGTCAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTATATTTTAAATCATTGCAATGGCTAGGGGTGTAAGTCAGGG  800

seq1  TAG-AGGACTTACATGGCACGCTACAGC-TTTAATCTCTGGCAGTGAGAT  848
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGAAGGACTTACATGGCACGCTACAGCTTTTAATCTCTGGCAGTGAGAT  850

seq1  GAATGGATGAATGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATGAATGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  900

seq1  TAGATGAGATGTAAAGAATG-TTATGCATGTGGGATGATTTA-TTTTAT-  945
      |||||||||||||||||||| ||||||||||||||||||||| |||||| 
seq2  TAGATGAGATGTAAAGAATGTTTATGCATGTGGGATGATTTATTTTTATG  950

seq1  GGTCCACCTTGACATGG-CCATACAGTCTCTGAATATTCATTATTTTATG  994
      |||||| |||||||||| |||||||||||||| |||| ||||||||||||
seq2  GGTCCA-CTTGACATGGCCCATACAGTCTCTGGATATCCATTATTTTATG  999

seq1  --TGTTTCTG-CAATGACCTTGTGAATAACTGTAACAAACAGTAGGTAGA  1041
         ||||||| |||||||| |||| |  |||||||||||||||| |||||
seq2  GTGGTTTCTGCCAATGACC-TGTGGAATACTGTAACAAACAGTA-GTAGA  1047

seq1  GTTAGACAGAGAGCCTTCTATAATGTAGGTGATCTCCATCCAATCAACTG  1091
      ||||||||||||| |||| |||||||| ||||||| ||||| ||| ||||
seq2  GTTAGACAGAGAG-CTTC-ATAATGTA-GTGATCT-CATCC-ATCGACTG  1092

seq1  ATAGAGCTATACACTCATTCAGC  1114
      || ||||||||| |  |||||||
seq2  AT-GAGCTATACTC-GATTCAGC  1113


seq1: chr13_70436093_70436319
seq2: B6Ng01-283E04.g_70_294 (reverse)

seq1  ACACACAGTACATACACACACAGACATATACACACACCATACACATACTC  50
      ||||||||| |  | |||||| |||||| |||||||||| |||| |||||
seq2  ACACACAGTTCGAAGACACACGGACATA-ACACACACCAAACACCTACTC  49

seq1  ACACATGTACACCAAATACATGCACACACACACACACTCATATACTCACA  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATG-ACACCAAATACATGCACACACACACACACTCATATACTCACA  98

seq1  CACAGATACATACACACAGCACACATATACATATCACTACTACCACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATACATACACACAGCACACATATACATATCACTACTACCACCACC  148

seq1  ACCAGGAAATACTGAGTCAAGGGCCACTTAGCAAAACAATCAGATAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAATACTGAGTCAAGGGCCACTTAGCAAAACAATCAGATAAGCA  198

seq1  GAGAACTACAAAGTAAGACTCTCTTTG  227
      |||||||||||||||||||||||||||
seq2  GAGAACTACAAAGTAAGACTCTCTTTG  225


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