BAC Information

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BAC

Clone NameB6Ng01-283F21
Chromosome13 (Build37)
Map Location 10,660,028 - 10,780,235
singlet/doubletdoublet
Overlap genenone
Upstream geneDip2c, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283F21.bB6Ng01-283F21.g
ACCGA082347GA082348
length1,171618
definitionB6Ng01-283F21.b B6Ng01-283F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,779,076 - 10,780,235)(10,660,028 - 10,660,644)
sequence
gaattctttagtctgttttcagagaaatgttttctcaactctagaattga
tcttttgaaaactcttatgaattacattactctttatcctctggaactct
attttaagtaaccattttttctttaccatttgatattatgagaattattt
taaatatacatcacatactttgtaatttttaagtcattttatgctacatt
ttatcatctgatatttctttttgtgttgtcagagtcaacagtgaggaaaa
gcatttctattcatacctgttttaaaaattgataaaatcaaagaggagtg
tctacaatgttgatttatatttgtatgtcttggcacagatagcatgatgt
gaagggtgtgaaatcaatactagccaaggacttccctagggctcactagt
cagccagcatagtctaatcaatgagttccagcccagaaaaagacattgtc
tcagaaactaaggtggatagtaactaaataataatattcaaagtttactt
ctgccctccatatgcacatatttaaggagagagatgtcctgacaaagaga
gagacagacagagacagagagagacaaagacagagagtcagagagcattc
cttttgattacataatgtatataaatcagccacgaaaacaaaaggagaat
tttcctgtccagaagaacctaaaattcagtaaggaatgaaatgattgagt
ggaaaatgggtagaaattagagatggagagtcagttcctagttgaaaaat
aaaaaaaaaaaaaaaggaacattggacagcagggaaaagtgtggcacatc
ccaataaaagccccacagaatcactttagagagtgcaaacacttgaccag
tacatcttagataaagaagctgagacccattggttcatctcatcttacat
ttctaagtcacatgtcaaattctggtcccaggggcttttcccatatccat
accatgtcagagtttcacactgtactggttgagatatacataagataaaa
tgagcctccaggagtactagagtgggttattggcctccaggactgtgcag
agacgtagaagtgacaaactagagatgataatctatggccactgttcatt
ctgttgccttccactatttcagaaaaatatctggctcagtatgattagcc
tgtctattggattaggtggcc

gaattcatttgcaaggttaaaaaatgtgcttgctatgtctttctaataat
tgatgggctggggttgtggaatgctgacttgtgagataattaaaaaggaa
cctggaataaaactgaattgatatgtaaataaaagactggtcctaggtca
gtgagagctgagttatctgaatgtgctttctatagatatccagagaaagc
tgtcttgaaaaaaaccacaggctatcagcatgtaccttataattgacttt
gagtcattagtttttgatgctctcaaacacctcttctctcagaaacacct
ctccaagctggagctgatccttcgcagtgaggtagatagagtccatgctc
cagtaaattgctccacatttagataatgataaaaggactcaatgatagga
gaaagagagagaggagaaagacagagagaatattgggtgtgaaaaggcag
gaatactggtgaaattggagaggagggaatggatggtggatttgatccaa
atgcatttgcatgtataaatattgcatacctatttacaaaactgattaca
tgccaagattatgaggtattatgagggataaagatgtttgtatggttaga
attatcacaaattgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10779076_10780235
seq2: B6Ng01-283F21.b_49_1219 (reverse)

seq1  GGCCACTTAAT-CAATAGACA-GCTAATAATA-TGAG-CAGATA--TTTC  44
      |||||| |||| ||||||||| |||||| ||| |||| ||||||  ||||
seq2  GGCCACCTAATCCAATAGACAGGCTAATCATACTGAGCCAGATATTTTTC  50

seq1  TGAAAAAGT-GAAG--CACAG-ATGAACAGTGCCCATAGA-TATCATCTC  89
      ||||| ||| ||||   |||| |||||||||| ||||||| |||||||||
seq2  TGAAATAGTGGAAGGCAACAGAATGAACAGTGGCCATAGATTATCATCTC  100

seq1  TAGTTTGTCACTTCTACGTCTCCTGCACAGTCCTG--AGCCAAT-ACCCA  136
      ||||||||||||||||||||| |||||||||||||   |||||| |||||
seq2  TAGTTTGTCACTTCTACGTCT-CTGCACAGTCCTGGAGGCCAATAACCCA  149

seq1  CTCTAGTACTTCCTGGAGGCTCATTTTATCTTATGTATTATCTCACCCAG  186
      ||||||||| ||||||||||||||||||||||||||| ||||||| ||||
seq2  CTCTAGTAC-TCCTGGAGGCTCATTTTATCTTATGTA-TATCTCAACCAG  197

seq1  TACAGTGTGAAACTCTGACATGGTATGGATATGGGAAAAGCCCCTGGGAC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTGAAACTCTGACATGGTATGGATATGGGAAAAGCCCCTGGGAC  247

seq1  CAGAATTTTGACATGTGACTTAGAAATGTAAGATGAGATGAACCAATGGG  286
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAA-TTTGACATGTGACTTAGAAATGTAAGATGAGATGAACCAATGGG  296

seq1  TCTCAGCTTCTTTATCTAAGATGTACTGGTCAAGTGTTTGCACTCTCTAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTCTTTATCTAAGATGTACTGGTCAAGTGTTTGCACTCTCTAA  346

seq1  AGTGATTCTGTGGGGCTTTTATTGGGATGTGCCACACTTTTCCCTGCTGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTGTGGGGCTTTTATTGGGATGTGCCACACTTTTCCCTGCTGT  396

seq1  CCAATGTTCC-TTTTTTTTTTTTTTATTTTTCAACTAGGAACTGACTCTC  435
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTTCCTTTTTTTTTTTTTTTATTTTTCAACTAGGAACTGACTCTC  446

seq1  CATCTCTAATTTCTACCCATTTTCCACTCAATCATTTCATTCCTTACTGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTAATTTCTACCCATTTTCCACTCAATCATTTCATTCCTTACTGA  496

seq1  ATTTTAGGTTCTTCTGGACAGGAAAATTCTCCTTTTGTTTTCGTGGCTGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTTCTTCTGGACAGGAAAATTCTCCTTTTGTTTTCGTGGCTGA  546

seq1  TTTATATACATTATGTAATCAAAAGGAATGCTCTCTGACTCTCTGTCTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACATTATGTAATCAAAAGGAATGCTCTCTGACTCTCTGTCTTT  596

seq1  GTCTCTCTCTGTCTCTGTCTGTCTCTCTCTTTGTCAGGACATCTCTCTCC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTGTCTCTGTCTGTCTCTCTCTTTGTCAGGACATCTCTCTCC  646

seq1  TTAAATATGTGCATATGGAGGGCAGAAGTAAACTTTGAATATTATTATTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGTGCATATGGAGGGCAGAAGTAAACTTTGAATATTATTATTT  696

seq1  AGTTACTATCCACCTTAGTTTCTGAGACAATGTCTTTTTCTGGGCTGGAA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTATCCACCTTAGTTTCTGAGACAATGTCTTTTTCTGGGCTGGAA  746

seq1  CTCATTGATTAGACTATGCTGGCTGACTAGTGAGCCCTAGGGAAGTCCTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGATTAGACTATGCTGGCTGACTAGTGAGCCCTAGGGAAGTCCTT  796

seq1  GGCTAGTATTGATTTCACACCCTTCACATCATGCTATCTGTGCCAAGACA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTATTGATTTCACACCCTTCACATCATGCTATCTGTGCCAAGACA  846

seq1  TACAAATATAAATCAACATTGTAGACACTCCTCTTTGATTTTATCAATTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATAAATCAACATTGTAGACACTCCTCTTTGATTTTATCAATTT  896

seq1  TTAAAACAGGTATGAATAGAAATGCTTTTCCTCACTGTTGACTCTGACAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGGTATGAATAGAAATGCTTTTCCTCACTGTTGACTCTGACAA  946

seq1  CACAAAAAGAAATATCAGATGATAAAATGTAGCATAAAATGACTTAAAAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGAAATATCAGATGATAAAATGTAGCATAAAATGACTTAAAAA  996

seq1  TTACAAAGTATGTGATGTATATTTAAAATAATTCTCATAATATCAAATGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGTATGTGATGTATATTTAAAATAATTCTCATAATATCAAATGG  1046

seq1  TAAAGAAAAAATGGTTACTTAAAATAGAGTTCCAGAGGATAAAGAGTAAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAATGGTTACTTAAAATAGAGTTCCAGAGGATAAAGAGTAAT  1096

seq1  GTAATTCATAAGAGTTTTCAAAAGATCAATTCTAGAGTTGAGAAAACATT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCATAAGAGTTTTCAAAAGATCAATTCTAGAGTTGAGAAAACATT  1146

seq1  TCTCTGAAAACAGACTAAAGAATTC  1160
      |||||||||||||||||||||||||
seq2  TCTCTGAAAACAGACTAAAGAATTC  1171


seq1: chr13_10660028_10660644
seq2: B6Ng01-283F21.g_65_682

seq1  GAATTCATTTGCAAGGTTAAAAAATGTGCTTGCTATGTCTTTCTAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCAAGGTTAAAAAATGTGCTTGCTATGTCTTTCTAATAAT  50

seq1  TGATGGGCTGGGGTTGTGGAATGCTGACTTGTGAGATAATTAAAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCTGGGGTTGTGGAATGCTGACTTGTGAGATAATTAAAAAGGAA  100

seq1  CCTGGAATAAAACTGAATTGATATGTAAATAAAAGACTGGTCCTAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATAAAACTGAATTGATATGTAAATAAAAGACTGGTCCTAGGTCA  150

seq1  GTGAGAGCTGAGTTATCTGAATGTGCTTTCTATAGATATCCAGAGAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCTGAGTTATCTGAATGTGCTTTCTATAGATATCCAGAGAAAGC  200

seq1  TGTCTTGAAAAAAACCACAGGCTATCAGCATGTACCTTATAATTGACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAAAAACCACAGGCTATCAGCATGTACCTTATAATTGACTTT  250

seq1  GAGTCATTAGTTTTTGATGCTCTCAAACACCTCTTCTCTCAGAAACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTAGTTTTTGATGCTCTCAAACACCTCTTCTCTCAGAAACACCT  300

seq1  CTCCAAGCTGGAGCTGATCCTTCGCAGTGAGGTAGATAGAGTCCATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTGGAGCTGATCCTTCGCAGTGAGGTAGATAGAGTCCATGCTC  350

seq1  CAGTAAATTGCTCCACATTTAGATAATGATAAAAGGACTCAATGATAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATTGCTCCACATTTAGATAATGATAAAAGGACTCAATGATAGGA  400

seq1  GAAAGAGAGAGAGGAGAAAGACAGAGAGAATATTGGGTGTGAAAAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAGAGGAGAAAGACAGAGAGAATATTGGGTGTGAAAAGGCAG  450

seq1  GAATACTGGTGAAATTGGAGAGGAGGGAATGGATGGTGGATTTGATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGGTGAAATTGGAGAGGAGGGAATGGATGGTGGATTTGATCCAA  500

seq1  ATGCATTTGCATGTATAAATATTGCATACATATTTACAAAACTGTTTACA  550
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  ATGCATTTGCATGTATAAATATTGCATACCTATTTACAAAACTGATTACA  550

seq1  TGCCAAGATTATGAGGTATTATGAGGGACAAAGATGTTTGTATAGTTAG-  599
      |||||||||||||||||||||||||||| |||||||||||||| ||||| 
seq2  TGCCAAGATTATGAGGTATTATGAGGGATAAAGATGTTTGTATGGTTAGA  600

seq1  ACTATCACAAAATGCTCA  617
      | ||||||||| ||||||
seq2  ATTATCACAAATTGCTCA  618


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