BAC Information

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BAC

Clone NameB6Ng01-283N07
Chromosome13 (Build37)
Map Location 9,787,262 - 9,980,077
singlet/doubletdoublet
Overlap geneChrm3, LOC100039604
Upstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283N07.bB6Ng01-283N07.g
ACCGA082689GA082690
length1,0031,132
definitionB6Ng01-283N07.b B6Ng01-283N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,787,262 - 9,787,821)(9,978,922 - 9,980,077)
sequence
gaattcaacagcatagtcaatgttctgggaatgagatgagagagttatta
gagtattgtcagtaggtctggggacaatggcttagtcagtagtgcttgcc
ttgcaaccatgaagaccttaatccattctatagcagcaatataaaaagct
gggttcagtggtacccgtttgtaacctcagcgccaggaagttagagatat
gtgggtgtctggacttcactgggcaggcagcctagcacaatccataagct
ctggattcagtgagagagcctgccttaaaaattaagtggagagggctctg
ccagcgcaggtgggggagccatcttgggtcccagatccctcagagactag
tctgcagaggtgagagtgtggactacaaaagtgacacagcttctaggaca
gaccccgtttcggactccagacatccaggcacttccctgccagaggagag
gtttctgcccccgagggctctgctggagcaggtgggggagccatcttggg
tcccggatacctcagagactagtctgcacaggtgagagtgtggtctatag
aagctatacagcttctgggacaggaccttttttgggccttcatcttcatc
caggaggcaggtctgaacaccagatatctgtgcaccttccctgcaagagg
agagcttgcctgcagatagtactctgaccactgagactcaggagagagat
agactcccaggtctgctgacagaggctaacagaatcacaggagctccaac
cagagacaactataacagatttccagatggtgaaaggcaaacataagaat
cttactaacagaaaccaagaccactcaccatcatcagaacccagcactcc
cacctcagccagtcctggataccccaacacacccgaaaagcaagacttgg
atttaaaatcatatctcatgatgctgggtagaggacatcaagaaggactt
tagtaactcacttaaagaaatacaggatgtcttagtcagggtttctattc
ctg
gaattctttcctgtgctttccaatgcaccattctaagagtagacagctct
tctgtatcaacctctgcactaaggaggccatataggggggtccaagggac
tggctggccagtcggtctagccagttggtaaactctaggttcagtgagag
attctgtctcagaaaataaggtggagaagtaattgaggaagatatacagc
attaacctctagccttcacacacacacacatatttctcaggatattaaac
aaggattctgagaattgctctcctttttctcagtggaaataacaaaagcc
ttgaatttcatgtggtgcctggtcattgtgacatttaaacatgcactgag
ttcttgaagataagtccttcaactctagtctggaagccagaaggtttaac
aagtcacatgatgcaagctgtctaagagaatgttcatattaacaagcaag
cagacctgcactaattaaagtccaaaagcaggagaccttccttttgagaa
caactactgaagactcgggcaaccacactgtcagaatagcacgtaaagaa
ttccaattctgtggaaacagccattggtacagcagctgacagactatcat
tttgtcttcctgggacttgcaggaaatggaaaacagaccaattcaccttt
tacattatggttctctgagtatttatggccttggcattagaaattgatag
aaattatggtaatgggagagtggcaacatcctgcctttccaggaatgttt
ggttttccttagtgatgacagctttatggttttcttgtgaaaatccccag
aaaggtgccattacaaaattgacaccttttgagatattgcaaaggccagt
ggctctgaagagaggacgcatatttatgaaacagaagctgatcaaacttg
ggaagtaaagaatgagatgcccactacatgtgggggaaattgacttcttc
ttgtgatgcatggttatatccttgatgtcctccagttatttatataatgg
accacaatacagaaatttgctctttctttgcaataaccaacaacaacact
aacccgaccaacctaccaaaccaaactagacgtgcattttctggatcatt
tcttctagaatccccaaggtggggaacatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_9787262_9787821
seq2: B6Ng01-283N07.b_48_607

seq1  GAATTCAACAGCATAGTCAATGTTCTGGGAATGAGATGAGAGAGTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGCATAGTCAATGTTCTGGGAATGAGATGAGAGAGTTATTA  50

seq1  GAGTATTGTCAGTAGGTCTGGGGACAATGGCTTAGTCAGTAGTGCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGTCAGTAGGTCTGGGGACAATGGCTTAGTCAGTAGTGCTTGCC  100

seq1  TTGCAACCATGAAGACCTTAATCCATTCTATAGCAGCAATATAAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCATGAAGACCTTAATCCATTCTATAGCAGCAATATAAAAAGCT  150

seq1  GGGTTCAGTGGTACCCGTTTGTAACCTCAGCGCCAGGAAGTTAGAGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGTGGTACCCGTTTGTAACCTCAGCGCCAGGAAGTTAGAGATAT  200

seq1  GTGGGTGTCTGGACTTCACTGGGCAGGCAGCCTAGCACAATCCATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTCTGGACTTCACTGGGCAGGCAGCCTAGCACAATCCATAAGCT  250

seq1  CTGGATTCAGTGAGAGAGCCTGCCTTAAAAATTAAGTGGAGAGGGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTCAGTGAGAGAGCCTGCCTTAAAAATTAAGTGGAGAGGGCTCTG  300

seq1  CCAGCGCAGGTGGGGGAGCCATCTTGGGTCCCAGATCCCTCAGAGACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCAGGTGGGGGAGCCATCTTGGGTCCCAGATCCCTCAGAGACTAG  350

seq1  TCTGCAGAGGTGAGAGTGTGGACTACAAAAGTGACACAGCTTCTAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGGTGAGAGTGTGGACTACAAAAGTGACACAGCTTCTAGGACA  400

seq1  GACCCCGTTTCGGACTCCAGACATCCAGGCACTTCCCTGCCAGAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGTTTCGGACTCCAGACATCCAGGCACTTCCCTGCCAGAGGAGAG  450

seq1  GTTTCTGCCCCCGAGGGCTCTGCTGGAGCAGGTGGGGGAGCCATCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCCCCCGAGGGCTCTGCTGGAGCAGGTGGGGGAGCCATCTTGGG  500

seq1  TCCCGGATACCTCAGAGACTAGTCTGCACAGGTGAGAGTGTGGTCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGATACCTCAGAGACTAGTCTGCACAGGTGAGAGTGTGGTCTATAG  550

seq1  AAGCTATACA  560
      ||||||||||
seq2  AAGCTATACA  560

seq1: chr13_9978922_9980077
seq2: B6Ng01-283N07.g_66_1197 (reverse)

seq1  CAAATG-TCCCCACCTTGGGGGATTTCCTAGAAGAAAATGTGATCCAGAA  49
      |||||| |||||||||| |||||||  ||||||||||   ||||||||||
seq2  CAAATGTTCCCCACCTT-GGGGATT--CTAGAAGAAA---TGATCCAGAA  44

seq1  AATGCACTGGTCTTTGTTTTTTGTTTTTGTGTTAGTTTGTTTGTGTGTTT  99
      |||||||  |||    |  |||| ||   || ||| ||| | |       
seq2  AATGCAC--GTC----TAGTTTGGTT---TGGTAGGTTGGTCG-------  78

seq1  TTGTTTGTTTGTTTGTTTGTTTTTTTGCAAAGAAAGAGC-AATTTCTGTA  148
        ||| || |  ||||| |  || ||||||||||||||| ||||||||||
seq2  -GGTTAGTGTTGTTGTTGG--TTATTGCAAAGAAAGAGCAAATTTCTGTA  125

seq1  TTGTGGTCCATTATATAAATAACTGGAGGACATTCAAGGATAATAACCAT  198
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TTGTGGTCCATTATATAAATAACTGGAGGACA-TCAAGGAT-ATAACCAT  173

seq1  GCATCACAAGAAAGAAGTCAATTT-CCCCACATTGTAGTGGGCATCTCAT  247
      |||||||||| ||||||||||||| ||||||| |||||||||||||||||
seq2  GCATCACAAG-AAGAAGTCAATTTCCCCCACA-TGTAGTGGGCATCTCAT  221

seq1  TCTTTACTT-CCAAGTTTGATTCAGCTTCTGTTTCAT-AATATGCGTCCT  295
      ||||||||| |||||||||| |||||||||||||||| ||||||||||||
seq2  TCTTTACTTCCCAAGTTTGA-TCAGCTTCTGTTTCATAAATATGCGTCCT  270

seq1  CTCTTCAGAGCCACTGGCCTTTGCAATATCTCAAAAGGTGTCAATTTTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGAGCCACTGGCCTTTGCAATATCTCAAAAGGTGTCAATTTTGT  320

seq1  AATGGCACC-TTCTGGGGATTTTCACAAGAAAACCATAAAGCTGTCATCA  394
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCACCTTTCTGGGGATTTTCACAAGAAAACCATAAAGCTGTCATCA  370

seq1  CTAAGGAAAACCAAACATTCCTGGAAAGGCAGGATGTTGCCACTCTCCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAAACCAAACATTCCTGGAAAGGCAGGATGTTGCCACTCTCCCA  420

seq1  TTACCATAATTTCTATCAATTTCTAATGCCAAGGCCATAAATACTCAGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATAATTTCTATCAATTTCTAATGCCAAGGCCATAAATACTCAGAG  470

seq1  AACCATAATGTAAAAGGTGAATTGGTCTGTTTTCCATTTCCTGCAAGTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAATGTAAAAGGTGAATTGGTCTGTTTTCCATTTCCTGCAAGTCC  520

seq1  CAGGAAGACAAAATGATAGTCTGTCAGCTGCTGTACCAATGGCTGTTTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACAAAATGATAGTCTGTCAGCTGCTGTACCAATGGCTGTTTCC  570

seq1  ACAGAATTGGAATTCTTTACGTGCTATTCTGACAGTGTGGTTGCCCGAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGGAATTCTTTACGTGCTATTCTGACAGTGTGGTTGCCCGAGT  620

seq1  CTTCAGTAGTTGTTCTCAAAAGGAAGGTCTCCTGCTTTTGGACTTTAATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAGTTGTTCTCAAAAGGAAGGTCTCCTGCTTTTGGACTTTAATT  670

seq1  AGTGCAGGTCTGCTTGCTTGTTAATATGAACATTCTCTTAGACAGCTTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGTCTGCTTGCTTGTTAATATGAACATTCTCTTAGACAGCTTGC  720

seq1  ATCATGTGACTTGTTAAACCTTCTGGCTTCCAGACTAGAGTTGAAGGACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGACTTGTTAAACCTTCTGGCTTCCAGACTAGAGTTGAAGGACT  770

seq1  TATCTTCAAGAACTCAGTGCATGTTTAAATGTCACAATGACCAGGCACCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAGAACTCAGTGCATGTTTAAATGTCACAATGACCAGGCACCA  820

seq1  CATGAAATTCAAGGCTTTTGTTATTTCCACTGAGAAAAAGGAGAGCAATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATTCAAGGCTTTTGTTATTTCCACTGAGAAAAAGGAGAGCAATT  870

seq1  CTCAGAATCCTTGTTTAATATCCTGAGAAATATGTGTGTGTGTGTGAAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCCTTGTTTAATATCCTGAGAAATATGTGTGTGTGTGTGAAGG  920

seq1  CTAGAGGTTAATGCTGTATATCTTCCTCAATTACTTCTCCACCTTATTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTTAATGCTGTATATCTTCCTCAATTACTTCTCCACCTTATTTT  970

seq1  CTGAGACAGAATCTCTCACTGAACCTAGAGTTTACCAACTGGCTAGACCG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGAATCTCTCACTGAACCTAGAGTTTACCAACTGGCTAGACCG  1020

seq1  ACTGGCCAGCCAGTCCCTTGGACCCCCCTATATGGCCTCCTTAGTGCAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGCCAGTCCCTTGGACCCCCCTATATGGCCTCCTTAGTGCAGA  1070

seq1  GGTTGATACAGAAGAGCTGTCTACTCTTAGAATGGTGCATTGGAAAGCAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATACAGAAGAGCTGTCTACTCTTAGAATGGTGCATTGGAAAGCAC  1120

seq1  AGGAAAGAATTC  1156
      ||||||||||||
seq2  AGGAAAGAATTC  1132