BAC Information

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BAC

Clone NameB6Ng01-285E11
Chromosome13 (Build37)
Map Location 21,409,266 - 21,561,895
singlet/doubletdoublet
Overlap geneGpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752
Downstream geneOTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285E11.bB6Ng01-285E11.g
ACCGA083768GA083769
length1,044974
definitionB6Ng01-285E11.b B6Ng01-285E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,409,266 - 21,410,307)(21,560,926 - 21,561,895)
sequence
gaattcttcagttccacaaagccccctgcttggaatcttgagcccagaga
ctcctctttatcttctctctttcctcaatcctttctgttcctttgtgagg
accactggtagtcattcctattcctccttgatttaatttggattctcttg
agaacaccttatttcactgcaggtatgtgcgtccaggcggtggctatgtc
cccaatttccagctctttgagaagggggatgtgaacggagacaatgaaca
aaaggttttttctttcctaaaggtgagtgagcaagcctggccagacagaa
ttctctgaaagcaacagggttggtatggaggatgggctaggattcctaaa
agggaataagttcatggaaacgaggcattagcttcaagcagaggaaacac
acacaatagctctggagtaggctagcatgctctgttgaatgctgatttgt
ttacttaataattattaatcaaatccctactttattcgaggaaccgtgaa
atataagttaacccttattagtaggttagtctcttacctgaaggatctat
tataaagtcaggagatgacagagacaaggacaggagagactgccaaaggg
tcggaatcacagagtagtacaaccacagtcaccaggagaagacccttccc
cacaccggtcacttagtcccttgtcccaagagaatggtctgcagaacaca
gctgtccctgtggatctcttcacccatccacagtaaattggaacaaaaga
gcaacttaccaaatataaaaggcaattctttatttcaataagttaaggca
ctacatgggctgctttttgtagcacagaaaataccatgccaaaacatggt
ggctcatagctatactgccagtactcgggatgcagaagcagaggatgggt
gtaagttctaggtttagtctaaatagtcctttccagaccagacacagcta
tggaacaggcctaactcaaacaaacaaaaacagtgatattatcttgtacc
agagcttgtgccaatatttaaaagtctatgtggtggtgggtggc
gaattcacttagctcagaaacttaaactcaaactttagttccagaagtaa
tttaggttttgcttccaatagagaggaacaggattgtttgctaagtcgcc
agcaactgaacctttggcaaggcatactctaagcagttacccaacactct
ttgatgcagaatctcatgattacttgggttttcttagttgctgggactgc
agatctgcagcagcaccaggcagctgtcaagtcccatcgaggcaggtagt
tggagtaaaggcaataggaatccttcactaactcagcagaaaagatggag
acaggaatggaaaaggaatggtgagccatgcggtggtaaacatatgactc
taagaaaagatctaacaaaaatctaaaggaagagatgtctgtgttccata
gttctactccactgggcaaaactgaaagacgcaacccaaatttagattaa
aatcaataaatttattcttactgatagtaagatggactcaatcttatgac
caaattgggaaacatagagggcaatgggaagcataaaggtggacattaca
attatctcccttatatgaaatccgcagctgtgtgggaaatttgctttgct
cccttacacagagatagagaaaacggctcgtcccttttcccacagggaaa
gagggttacaaaagccaattatctcgtatcaggcgccccattctttcgtt
cttatctcgcagcagtagcttcattctgtggaggatgcaggctgctagga
actcatgcgaatcaacagctattttaagcgatgcctggtccagagttaag
ttttcttatccatcacagttctgcttatgaaaacctttaatcttggtgct
tgagtggtgcctagcaagttccaagccagcatatgcaccactttaaaaat
aagcaaatagaaacttttatatgccccagtacaggggaatgccaagaagc
gggagtggggtgggttaggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21409266_21410307
seq2: B6Ng01-285E11.b_44_1087

seq1  GAATTCTTCAGTTCCACAAAGCCCCCTGCTTGGAATCTTGAGCCCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTCCACAAAGCCCCCTGCTTGGAATCTTGAGCCCAGAGA  50

seq1  CTCCTCTTTATCTTCTCTCTTTCCTCAATCCTTTCTGTTCCTTTGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTATCTTCTCTCTTTCCTCAATCCTTTCTGTTCCTTTGTGAGG  100

seq1  ACCACTGGTAGTCATTCCTATTCCTCCTTGATTTAATTTGGATTCTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGTAGTCATTCCTATTCCTCCTTGATTTAATTTGGATTCTCTTG  150

seq1  AGAACACCTTATTTCACTGCAGGTATGTGCGTCCAGGCGGTGGCTATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCTTATTTCACTGCAGGTATGTGCGTCCAGGCGGTGGCTATGTC  200

seq1  CCCAATTTCCAGCTCTTTGAGAAGGGGGATGTGAACGGAGACAATGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTCCAGCTCTTTGAGAAGGGGGATGTGAACGGAGACAATGAACA  250

seq1  AAAGGTTTTTTCTTTCCTAAAGGTGAGTGAGCAAGCCTGGCCAGACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTTTTCTTTCCTAAAGGTGAGTGAGCAAGCCTGGCCAGACAGAA  300

seq1  TTCTCTGAAAGCAACAGGGTTGGTATGGAGGATGGGCTAGGATTCCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAAGCAACAGGGTTGGTATGGAGGATGGGCTAGGATTCCTAAA  350

seq1  AGGGAATAAGTTCATGGAAACGAGGCATTAGCTTCAAGCAGAGGAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAGTTCATGGAAACGAGGCATTAGCTTCAAGCAGAGGAAACAC  400

seq1  ACACAATAGCTCTGGAGTAGGCTAGCATGCTCTGTTGAATGCTGATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATAGCTCTGGAGTAGGCTAGCATGCTCTGTTGAATGCTGATTTGT  450

seq1  TTACTTAATAATTATTAATCAAATCCCTACTTTATTCGAGGAACCGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAATAATTATTAATCAAATCCCTACTTTATTCGAGGAACCGTGAA  500

seq1  ATATAAGTTAACCCTTATTAGTAGGTTAGTCTCTTACCTGAAGGATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTTAACCCTTATTAGTAGGTTAGTCTCTTACCTGAAGGATCTAT  550

seq1  TATAAAGTCAGGAGATGACAGAGACAAGGACAGGAGAGACTGCCAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTCAGGAGATGACAGAGACAAGGACAGGAGAGACTGCCAAAGGG  600

seq1  TCGGAATCACAGAGTAGTACAACCACAGTCACCAGGAGAAGACCCTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAATCACAGAGTAGTACAACCACAGTCACCAGGAGAAGACCCTTCCC  650

seq1  CACACCGGTCACTTAGTCCCTTGTCCCAAGAGAATGGTCTGCAGAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCGGTCACTTAGTCCCTTGTCCCAAGAGAATGGTCTGCAGAACACA  700

seq1  GCTGTCCCTGTGGATCTCTTCACCCATCCACAGTAAATTGGAACAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCTGTGGATCTCTTCACCCATCCACAGTAAATTGGAACAAAAGA  750

seq1  GCAACTTACCAAATATAAAAGGCAATTCTTTATTTCAATAAGTTAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTACCAAATATAAAAGGCAATTCTTTATTTCAATAAGTTAAGGCA  800

seq1  CTACATGGGCTGCTTTTTGTAGCACAGAAAATACCATGCCAAAACATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGGCTGCTTTTTGTAGCACAGAAAATACCATGCCAAAACATGGT  850

seq1  GGCTCATAGCTATACTGCCAGTACTCGGGATGCAGAAGCAGGAGGATGGG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTCATAGCTATACTGCCAGTACTCGGGATGCAGAAGCA-GAGGATGGG  899

seq1  TGTAAGTTCTAGGTTTAGTCTAAATAGTCCTTTCCAGACCAGACACAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTCTAGGTTTAGTCTAAATAGTCCTTTCCAGACCAGACACAGCT  949

seq1  ATGGAACAAGGCCCTAACTCAAAACAAAC-AAAACAGTGATATTATC-TG  998
      ||||||||  | |||||||| |||||||| ||||||||||||||||| ||
seq2  ATGGAACA--GGCCTAACTC-AAACAAACAAAAACAGTGATATTATCTTG  996

seq1  TA-CAGAGC-TGTG-CAATATTTAAAAGTTCTATGTGGTG--TGGTGGC  1042
      || |||||| |||| ||||||||||||| |||||||||||   ||||||
seq2  TACCAGAGCTTGTGCCAATATTTAAAAG-TCTATGTGGTGGTGGGTGGC  1044

seq1: chr13_21560926_21561895
seq2: B6Ng01-285E11.g_69_1042 (reverse)

seq1  GCTCCCCT-ACCCA-CCCACTCCCGCTTCTTGGCATTCCCCTGTACTGGG  48
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTAACCCACCCCACTCCCGCTTCTTGGCATTCCCCTGTACTGGG  50

seq1  GCATAT-AAAGTTTCTATTTGCTTATTTTT-AAGTGGTGCATATGCTGGC  96
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  GCATATAAAAGTTTCTATTTGCTTATTTTTAAAGTGGTGCATATGCTGGC  100

seq1  TTGGAACTTGCTAGGCACCACTCAAGCACCAAGATTAAAGGTTTTCATAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTTGCTAGGCACCACTCAAGCACCAAGATTAAAGGTTTTCATAA  150

seq1  GCAGAACTGTGATGGATAAGAAAACTTAACTCTGGACCAGGCATCGCTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTGTGATGGATAAGAAAACTTAACTCTGGACCAGGCATCGCTTA  200

seq1  AAATAGCTGTTGATTCGCATGAGTTCCTAGCAGCCTGCATCCTCCACAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTGTTGATTCGCATGAGTTCCTAGCAGCCTGCATCCTCCACAGA  250

seq1  ATGAAGCTACTGCTGCGAGATAAGAACGAAAGAATGGGGCGCCTGATACG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTACTGCTGCGAGATAAGAACGAAAGAATGGGGCGCCTGATACG  300

seq1  AGATAATTGGCTTTTGTAACCCTCTTTCCCTGTGGGAAAAGGGACGAGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTGGCTTTTGTAACCCTCTTTCCCTGTGGGAAAAGGGACGAGCC  350

seq1  GTTTTCTCTATCTCTGTGTAAGGGAGCAAAGCAAATTTCCCACACAGCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTATCTCTGTGTAAGGGAGCAAAGCAAATTTCCCACACAGCTG  400

seq1  CGGATTTCATATAAGGGAGATAATTGTAATGTCCACCTTTATGCTTCCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCATATAAGGGAGATAATTGTAATGTCCACCTTTATGCTTCCCA  450

seq1  TTGCCCTCTATGTTTCCCAATTTGGTCATAAGATTGAGTCCATCTTACTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCTATGTTTCCCAATTTGGTCATAAGATTGAGTCCATCTTACTA  500

seq1  TCAGTAAGAATAAATTTATTGATTTTAATCTAAATTTGGGTTGCGTCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGAATAAATTTATTGATTTTAATCTAAATTTGGGTTGCGTCTTT  550

seq1  CAGTTTTGCCCAGTGGAGTAGAACTATGGAACACAGACATCTCTTCCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGCCCAGTGGAGTAGAACTATGGAACACAGACATCTCTTCCTTT  600

seq1  AGATTTTTGTTAGATCTTTTCTTAGAGTCATATGTTTACCACCGCATGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGTTAGATCTTTTCTTAGAGTCATATGTTTACCACCGCATGGC  650

seq1  TCACCATTCCTTTTCCATTCCTGTCTCCATCTTTTCTGCTGAGTTAGTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTCCTTTTCCATTCCTGTCTCCATCTTTTCTGCTGAGTTAGTGA  700

seq1  AGGATTCCTATTGCCTTTACTCCAACTACCTGCCTCGATGGGACTTGACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCTATTGCCTTTACTCCAACTACCTGCCTCGATGGGACTTGACA  750

seq1  GCTGCCTGGTGCTGCTGCAGATCTGCAGTCCCAGCAACTAAGAAAACCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGGTGCTGCTGCAGATCTGCAGTCCCAGCAACTAAGAAAACCCA  800

seq1  AGTAATCATGAGATTCTGCATCAAAGAGTGTTGGGTAACTGCTTAGAGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCATGAGATTCTGCATCAAAGAGTGTTGGGTAACTGCTTAGAGTA  850

seq1  TGCCTTGCCAAAGGTTCAGTTGCTGGCGACTTAGCAAACAATCCTGTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCCAAAGGTTCAGTTGCTGGCGACTTAGCAAACAATCCTGTTCC  900

seq1  TCTCTATTGGAAGCAAAACCTAAATTACTTCTGGAACTAAAGTTTGAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTGGAAGCAAAACCTAAATTACTTCTGGAACTAAAGTTTGAGTT  950

seq1  TAAGTTTCTGAGCTAAGTGAATTC  970
      ||||||||||||||||||||||||
seq2  TAAGTTTCTGAGCTAAGTGAATTC  974