BAC Information

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BAC

Clone NameB6Ng01-285M17
Chromosome13 (Build37)
Map Location 66,375,901 - 66,483,134
singlet/doubletdoublet
Overlap geneEG665974, LOC100041915
Upstream geneZfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892
Downstream gene2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285M17.bB6Ng01-285M17.g
ACCGA084151GA084152
length1,1651,143
definitionB6Ng01-285M17.b B6Ng01-285M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,481,985 - 66,483,134)(66,375,901 - 66,376,508)
sequence
gaattcaagttcttatcatacatatctttcattttcttagatagaatcac
accaaggtatttcatattatttgtgactattgtgaagggtgttgtttccc
taatttctttctcatccggtttatcctttgtgtagagtataaggccttag
cttcacacaatatactgtgaccaaggtacataagtaaataaacagttttc
tcacatgtttctttggctatggtggtttttacagcaacagaatctaagac
atcacctaactggtaaattgactctgttgggatttggaatctcatagatt
cctgatgcaataaaaggcactgatttgaaaagagaaagaagaatgaatgt
tagcagagtaagaagcaccgtgacagtaatgcatgtgatagcacagaagc
gctgcactttgggatagctttccaatgtactagggagatgttaagaatac
cagataacatacaacgacgggaacattctatgaaaaggacattgagattc
agattgtgcctgcaaaataaggctttgtaaatgtatgtgaaaagacagtt
tcattatgaaatgactgtgtttcattaagtgagaaaaatcactaatggaa
atatctcccacaagaacttcaccacagtgaggtcagtgatttctatggac
atataaatcactctagatgaagggtctcatcataaattttatcaaaatat
gagactaaagattatttcagttcaatatcacacacaaacatgcacataaa
acacatacacattgttctttacatcaggtgttgaaggtcagggtcatttt
tatctcaaaatactgtgttgggagccattaaaggcaacgctattgtcctg
atctctgaattgggcctctccccccaagaagaaaagagggtcaaaagcgg
gccaccgacacatgggattccgagaactatgggatgttccagccctgggt
catcaccgctctcctgaccacaccctgacaccaccaagtttcttgcttcc
tccatgtagctgtcaaaaggaaaagaatttctattgccccccccttccca
taaggtacattctctttttgctggtatggcctaccccctccccactgata
aggtatctgttacttcccccctttgctgtgcatttgaacctttggaacct
ttccaaatacatggg
gaattccagagaaaggtaaagacatagttttaaaaagcatgtacaccact
gcattggaaattctaagagatggataatttactcaataggttccacttat
caaattaaatcaaactaagataagcaacttaaacagacctaaaaacctag
aaaaaagagaagtcattacaaatctgccaccaaaaagacctcaaggccat
gagttttggggtagaatcctagcagactttcaaggaagagataacaagga
tactcctcaaagtattcaacaatattgaaagagaagaaacattggccgat
ttattttgtgaacccatggttactcaaatatccagtcaataaagactcag
caacaaaagagaatttcagaccaactttccttaaagtgactgacacaaaa
acactttataaagcaaaataagtaaaaaaaaaagaaagaaatagaaaaaa
atatcaaaggattatcccacgtgatcaatgaggtatgctccattaaatag
atgcaggaatggttcagcataatgtgcttaaagtgtaaggaaaaaaagaa
gtgatcttctcaccagatggtgaataattctctgacatgtccagcatcac
tttatgataaaatacttggagtgattatgcatacaagggacatacctaaa
cataatattgttactttacagcaagcttagataaaacattaaattaaatg
gagagacaatcaaattaattccactaattcccaaacaagataaggtggtc
cattctctccatatctattcaaaatattatctaaaattttaactggtgca
ataaaactgaagaagatgagggtaatatgaattataaagaaggaagtaaa
attatctttatttacagatgaagttatagtatacataagtgaaccaaaac
ttcccaaaggcaattcctagagctgacaaacacttttagcaaacttgtgg
ggtacaggattaagtaaaaaagaaaaagaaaaagcagtagccttcgaatg
tgcaaatgagcttgcaagtgcatactataagagatatcataatgtatgaa
tgatgtgatgcttggtcacttttttcccataataatcttgaggaacctca
aatattaggtgtgtaggcctaaagtcttaccacgttcctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66481985_66483134
seq2: B6Ng01-285M17.b_43_1207 (reverse)

seq1  CCCATGTATTGAGAAAGGT--CCAAGGTTTAAATGCACAAGCAAA-GGGG  47
      ||||||||||  |||||||  | |||||| |||||||| |||||| ||||
seq2  CCCATGTATTTGGAAAGGTTCCAAAGGTTCAAATGCAC-AGCAAAGGGGG  49

seq1  GAAGT-ACAGATA-CTTATCAGT-GGGAGGGGTAGGGCAATACAAGCAAA  94
      ||||| ||||||| ||||||||| ||||||||   ||| |||| ||||||
seq2  GAAGTAACAGATACCTTATCAGTGGGGAGGGGGTAGGCCATACCAGCAAA  99

seq1  AGGAGAA-GTA-CTTATGGGA--GGGGGGGCAATAGAAATTCTTT--CTT  138
      | ||||| ||| |||||||||  ||||||||||||||||||||||  |||
seq2  AAGAGAATGTACCTTATGGGAAGGGGGGGGCAATAGAAATTCTTTTCCTT  149

seq1  TTGACAGCTACATGG-GGAAGC-AGGAACTTGGTGGTGTCAGGGTGTGGT  186
      ||||||||||||||| |||||| || ||||||||||||||||||||||||
seq2  TTGACAGCTACATGGAGGAAGCAAGAAACTTGGTGGTGTCAGGGTGTGGT  199

seq1  CAGGAGAGCGGTGATGACCCAGGGCTGGAACATCCCATAGTTCTCGGAAT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGCGGTGATGACCCAGGGCTGGAACATCCCATAGTTCTCGGAAT  249

seq1  -CCATGTGTCGGTGGCCCGCTTTTGACCCTCTTTTCTTCTTGGGGGGAGA  285
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTCGGTGGCCCGCTTTTGACCCTCTTTTCTTCTTGGGGGGAGA  299

seq1  GGCCCAATTCAGAGATCAGGACAATAGCGTTGCC-TTAATGGCTCCCAAC  334
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCCCAATTCAGAGATCAGGACAATAGCGTTGCCTTTAATGGCTCCCAAC  349

seq1  ACAGTATTTTGAGATAAAAATGACCCTGACCTTCAACACCTGATGTAAAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTTGAGATAAAAATGACCCTGACCTTCAACACCTGATGTAAAG  399

seq1  AACAATGTGTATGTGTTTTATGTGCATGTTTGTGTGTGATATTGAACTGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGTATGTGTTTTATGTGCATGTTTGTGTGTGATATTGAACTGA  449

seq1  AATAATCTTTAGTCTCATATTTTGATAAAATTTATGATGAGACCCTTCAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTTTAGTCTCATATTTTGATAAAATTTATGATGAGACCCTTCAT  499

seq1  CTAGAGTGATTTATATGTCCATAGAAATCACTGACCTCACTGTGGTGAAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGATTTATATGTCCATAGAAATCACTGACCTCACTGTGGTGAAG  549

seq1  TTCTTGTGGGAGATATTTCCATTAGTGATTTTTCTCACTTAATGAAACAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGGAGATATTTCCATTAGTGATTTTTCTCACTTAATGAAACAC  599

seq1  AGTCATTTCATAATGAAACTGTCTTTTCACATACATTTACAAAGCCTTAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCATAATGAAACTGTCTTTTCACATACATTTACAAAGCCTTAT  649

seq1  TTTGCAGGCACAATCTGAATCTCAATGTCCTTTTCATAGAATGTTCCCGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGCACAATCTGAATCTCAATGTCCTTTTCATAGAATGTTCCCGT  699

seq1  CGTTGTATGTTATCTGGTATTCTTAACATCTCCCTAGTACATTGGAAAGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTATGTTATCTGGTATTCTTAACATCTCCCTAGTACATTGGAAAGC  749

seq1  TATCCCAAAGTGCAGCGCTTCTGTGCTATCACATGCATTACTGTCACGGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAAGTGCAGCGCTTCTGTGCTATCACATGCATTACTGTCACGGT  799

seq1  GCTTCTTACTCTGCTAACATTCATTCTTCTTTCTCTTTTCAAATCAGTGC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTACTCTGCTAACATTCATTCTTCTTTCTCTTTTCAAATCAGTGC  849

seq1  CTTTTATTGCATCAGGAATCTATGAGATTCCAAATCCCAACAGAGTCAAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGCATCAGGAATCTATGAGATTCCAAATCCCAACAGAGTCAAT  899

seq1  TTACCAGTTAGGTGATGTCTTAGATTCTGTTGCTGTAAAAACCACCATAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTTAGGTGATGTCTTAGATTCTGTTGCTGTAAAAACCACCATAG  949

seq1  CCAAAGAAACATGTGAGAAAACTGTTTATTTACTTATGTACCTTGGTCAC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAACATGTGAGAAAACTGTTTATTTACTTATGTACCTTGGTCAC  999

seq1  AGTATATTGTGTGAAGCTAAGGCCTTATACTCTACACAAAGGATAAACCG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTGTGTGAAGCTAAGGCCTTATACTCTACACAAAGGATAAACCG  1049

seq1  GATGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATAA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATAA  1099

seq1  TATGAAATACCTTGGTGTGATTCTATCTAAGAAAATGAAAGATATGTATG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATACCTTGGTGTGATTCTATCTAAGAAAATGAAAGATATGTATG  1149

seq1  ATAAGAACTTGAATTC  1150
      ||||||||||||||||
seq2  ATAAGAACTTGAATTC  1165

seq1: chr13_66375901_66376508
seq2: B6Ng01-285M17.g_599_1206

seq1  TAAGGAAAAAAAGAAGTGATCTTCTCACCAGATGGTGAATAATTCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAAAAGAAGTGATCTTCTCACCAGATGGTGAATAATTCTCTGA  50

seq1  CATGTCCAGCATCACTTTATGATAAAATACTTGGAGTGATTATGCATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAGCATCACTTTATGATAAAATACTTGGAGTGATTATGCATACA  100

seq1  AGGGACATACCTAAACATAATATTGTTACTTTACAGCAAGCTTAGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATACCTAAACATAATATTGTTACTTTACAGCAAGCTTAGATAAA  150

seq1  ACATTAAATTAAATGGAGAGACAATCAAATTAATTCCACTAATTCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAATTAAATGGAGAGACAATCAAATTAATTCCACTAATTCCCAAA  200

seq1  CAAGATAAGGTGGTCCATTCTCTCCATATCTATTCAAAATATTATCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAGGTGGTCCATTCTCTCCATATCTATTCAAAATATTATCTAAA  250

seq1  ATTTTAACTGGTGCAATAAAACTGAAGAAGATGAGGGTAATATGAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTGGTGCAATAAAACTGAAGAAGATGAGGGTAATATGAATTAT  300

seq1  AAAGAAGGAAGTAAAATTATCTTTATTTACAGATGAAGTTATAGTATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAAGTAAAATTATCTTTATTTACAGATGAAGTTATAGTATACA  350

seq1  TAAGTGAACCAAAACTTCCCAAAGGCAATTCCTAGAGCTGACAAACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAACCAAAACTTCCCAAAGGCAATTCCTAGAGCTGACAAACACTT  400

seq1  TTAGCAAACTTGTGGGGTACAGGATTAAGTAAAAAAGAAAAAGAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACTTGTGGGGTACAGGATTAAGTAAAAAAGAAAAAGAAAAAGC  450

seq1  AGTAGCCTTCGAATGTGCAAATGAGCTTGCAAGTGCATACAAAATAAAGA  500
      |||||||||||||||||||||||||||||||||||||||| |    ||||
seq2  AGTAGCCTTCGAATGTGCAAATGAGCTTGCAAGTGCATACTA---TAAGA  497

seq1  GATATCATAATGTATGAATTGATTGTTGATGCTT-GTCACTTTTTTCCCA  549
      |||||||||||||||||| ||||   |||||||| |||||||||||||||
seq2  GATATCATAATGTATGAA-TGAT--GTGATGCTTGGTCACTTTTTTCCCA  544

seq1  TAATAATCTTGAGGAA-CTC-AATA-TAAGTGTGTAGG-CTAAAATCTTA  595
      |||||||||||||||| ||| |||| || ||||||||| ||||| |||||
seq2  TAATAATCTTGAGGAACCTCAAATATTAGGTGTGTAGGCCTAAAGTCTTA  594

seq1  CCACATT-CTTTGT  608
      |||| || ||||||
seq2  CCACGTTCCTTTGT  608