BAC Information

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BAC

Clone NameB6Ng01-286A05
Chromosome13 (Build37)
Map Location 81,710,871 - 81,712,003
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286A05.bB6Ng01-286A05.g
ACCGA084316GA084317
length1,1661,101
definitionB6Ng01-286A05.b B6Ng01-286A05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgccggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatctgtctggcagttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
ctaaacacccatggaaggagttacagagacaaagtttggagctgaggtga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaatgctgacaccattgtatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaagagctagagaagtacccaaggagctaaagggatctgcaaccctat
aggtggatcaacattatgactaccagtaccccggagctctgactctagct
gcatatgtatcaaagatggcttagtcgcatcactgaagagaggtccaatg
gacaccaacttatatgcccgaactggtcgccaggtcaaagggggaatggc
gctaggagattgggtg
gaattctcttgtgttcacgagggtagcagcgagccagttgaaacattagg
tcacacactccactctcttgtctttactttcaagaatgccgaggttaaac
ttttatcacgtgatttaaagaaaagattgcccttcattcttgttacatgg
catttaaagaataaataatttttatttctataaaataaaaaaattacatg
aatccacatgttaccttctcagccattgtaataagaactacccagcattt
ctctgaatgcacttcataaatagtacagcctcagggcctctggtatgttt
tgattagttacttatttagttagttataaaattcagaaaatacttcgtaa
agaaaaaataaaatctgattagttaccttccgtgacatgcaactggagga
tgttgcacaggtcatagctacgaaaagtaagattcgggatgaatttgagg
ccttttataccgcaaatgagggaatcagtgagaggaatcctgtgcttctt
tgtatctgattagcagtcactatgcatctttttgagtggtgggaggttag
gggtctggtctggaacgctctatgtagaccaggctggcttcagactcagg
tccacctgcctctacctctggagtgctggcattgaaggtgcacactgtct
gacagagttctttttaatgctatagttatattttcctcctattattttat
ctatttataattctatctctaacataattgaggttattctgtatgccaca
aatccagacccacagaagacactagaaggcaaacacaggttggcataatt
tttaaagtgaatgaacaaaatgtagactacggagaacacatcaattgaga
ggccattgatcatttctttcagaagtacacatttattttcttctttacaa
agtaaaaacataatccaaaaaccccacacagtctaaatgatgccatcata
tatgtacagaggtttatgtcactgctttactcataaaagctagcaaatca
tgaatataatttgaatagattttttctgaaactttggatatttaagtgtg
aaccaatagtcaatggacagttaagaaacttaagcaatggacccgtgctt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81710871_81712003
seq2: B6Ng01-286A05.g_65_1165 (reverse)

seq1  TAAGCACGGGTCAATTTGCTTTAGTGTTCCTTAAAACTGTCCATTGACTT  50
      |||||||||||| | |||||| |  ||| |||  ||||||||||||||| 
seq2  TAAGCACGGGTCCA-TTGCTTAA--GTTTCTT--AACTGTCCATTGACT-  44

seq1  AATTGTGTTCACACCTAAATTATTCAAAAGTTTCAGGAAAAAAATCTATT  100
       |||| |||||||| |||||   || ||||||||||  |||||||||| |
seq2  -ATTG-GTTCACACTTAAAT--ATCCAAAGTTTCAG--AAAAAATCTA-T  87

seq1  TCAAATTTATATTTCATTGAATTTTGCTAGCTTTTATGAAGTAAAGCAGT  150
      ||||| ||||| |||| |||  |||||||||||||||| |||||||||| 
seq2  TCAAA-TTATA-TTCA-TGA--TTTGCTAGCTTTTATG-AGTAAAGCAG-  130

seq1  TGACCATAAAACCCTCTGTAACATATTATGATGGCATCATTTAGACCTTG  200
      ||| ||||||  ||||||| ||||| ||||||||||||||||||||  ||
seq2  TGA-CATAAA--CCTCTGT-ACATA-TATGATGGCATCATTTAGAC--TG  173

seq1  TGTTGGGTTTTTTGGATTTATTGTTTTTACTTTTGTTAAAGAAGAAAATA  250
      || |||| ||||||||||   ||||||||||||   ||||||||||||||
seq2  TG-TGGGGTTTTTGGATT--ATGTTTTTACTTT--GTAAAGAAGAAAATA  218

seq1  AATGTGTACTTCTGAAAGAAATGATCAATGGCCTCTCAATTGATGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTACTTCTGAAAGAAATGATCAATGGCCTCTCAATTGATGTGTTC  268

seq1  TCCGTAGTCTACATTTTGTTCATTCACTTTAAAAATTATGCCAACCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTAGTCTACATTTTGTTCATTCACTTTAAAAATTATGCCAACCTGTG  318

seq1  TTTGCCTTCTAGTGTCTTCTGTGGGTCTGGATTTGTGGCATACAGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTCTAGTGTCTTCTGTGGGTCTGGATTTGTGGCATACAGAATAA  368

seq1  CCTCAATTATGTTAGAGATAGAATTATAAATAGATAAAATAATAGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTATGTTAGAGATAGAATTATAAATAGATAAAATAATAGGAGGA  418

seq1  AAATATAACTATAGCATTAAAAAGAACTCTGTCAGACAGTGTGCACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACTATAGCATTAAAAAGAACTCTGTCAGACAGTGTGCACCTTC  468

seq1  AATGCCAGCACTCCAGAGGTAGAGGCAGGTGGACCTGAGTCTGAAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGCACTCCAGAGGTAGAGGCAGGTGGACCTGAGTCTGAAGCCAG  518

seq1  CCTGGTCTACATAGAGCGTTCCAGACCAGACCCCTAACCTCCCACCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACATAGAGCGTTCCAGACCAGACCCCTAACCTCCCACCACTC  568

seq1  AAAAAGATGCATAGTGACTGCTAATCAGATACAAAGAAGCACAGGATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATGCATAGTGACTGCTAATCAGATACAAAGAAGCACAGGATTCC  618

seq1  TCTCACTGATTCCCTCATTTGCGGTATAAAAGGCCTCAAATTCATCCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGATTCCCTCATTTGCGGTATAAAAGGCCTCAAATTCATCCCGA  668

seq1  ATCTTACTTTTCGTAGCTATGACCTGTGCAACATCCTCCAGTTGCATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTTTCGTAGCTATGACCTGTGCAACATCCTCCAGTTGCATGTC  718

seq1  ACGGAAGGTAACTAATCAGATTTTATTTTTTCTTTACGAAGTATTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGGTAACTAATCAGATTTTATTTTTTCTTTACGAAGTATTTTCTG  768

seq1  AATTTTATAACTAACTAAATAAGTAACTAATCAAAACATACCAGAGGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATAACTAACTAAATAAGTAACTAATCAAAACATACCAGAGGCCC  818

seq1  TGAGGCTGTACTATTTATGAAGTGCATTCAGAGAAATGCTGGGTAGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGTACTATTTATGAAGTGCATTCAGAGAAATGCTGGGTAGTTCT  868

seq1  TATTACAATGGCTGAGAAGGTAACATGTGGATTCATGTAATTTTTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAATGGCTGAGAAGGTAACATGTGGATTCATGTAATTTTTTTATT  918

seq1  TTATAGAAATAAAAATTATTTATTCTTTAAATGCCATGTAACAAGAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAATAAAAATTATTTATTCTTTAAATGCCATGTAACAAGAATGA  968

seq1  AGGGCAATCTTTTCTTTAAATCACGTGATAAAAGTTTAACCTCGGCATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATCTTTTCTTTAAATCACGTGATAAAAGTTTAACCTCGGCATTC  1018

seq1  TTGAAAGTAAAGACAAGAGAGTGGAGTGTGTGACCTAATGTTTCAACTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTAAAGACAAGAGAGTGGAGTGTGTGACCTAATGTTTCAACTGG  1068

seq1  CTCGCTGCTACCCTCGTGAACACAAGAGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  CTCGCTGCTACCCTCGTGAACACAAGAGAATTC  1101