BAC Information

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BAC

Clone NameB6Ng01-286C15
Chromosome13 (Build37)
Map Location 78,829,934 - 78,830,991
singlet/doubletsinglet
Overlap genenone
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286C15.bB6Ng01-286C15.g
ACCGA084430GA084431
length1,2341,126
definitionB6Ng01-286C15.b B6Ng01-286C15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggtttctccatctatggtaattgaaagtttgcgtgggtata
gtagcctgggctggaatttgtgttctcttagtgtctgtataacatctgtc
caggatcttctggctttcatagtctctggtgaaaaatctggtggaattct
gataggcttgcctttatatgttacttgactttttcccttactgcttttaa
tattctatctttatttagtgcatttgttcttctgatttttatgtgttggg
aggaatttattttctggttcagtctatttggagttctgtaggcttcttgt
atgttcatgggcatctctttctttaggtttgggaagttttcttctataat
tttgttgaagatatttgctggcccttcgagttgaaaatcttcattctcat
ctactcctactatccgtagctttggtcttctcattgtgtcctggatttcc
tggatgttttgagttaggatctttttgcattttgcattttctttgatcgt
tgtgccgatgtcctctatggaattttctgcacctgagattctctcttcca
tctcttgtattctgttgctgatgctcgcatctattgttccagatttcttt
cctagggtttctgtctccagtgtcgcctcactttgggttttctttattgt
gtccacttccctttttaggtctagtacagttttgttcatttccatcacct
gtttggatgtgttttcctgtttttctttaaggacttgtaactctttagca
gtgttctcctgtatttctttaagtgagttattaaagtccttcttgatgtc
ctctaccatcatcatgagatatgcctttaaatcccagtctagctttttgg
gtgtgttggggtacccaggactggctgagtgggagtgctgggttctgatg
atagtgagtggtcttggtttctgttagtaagattcttacatctgcctttc
accatctggtaatctctggagtcagttgttatagttttcgtgggttagaa
gcttgttctttcgtattcttgttagccctctaccgagcagaccttgggaa
gacatagaattctcctcctgagtttcgttggtagaagcacctctctgcaa
gttaagctctctcccctttgcaaagaaaggtcacgaatatcttgttgttt
tggacttggccctctggcagagtagacctgatagcgtccaagctgctagc
tctgttctcaacttcactttgggtgcggacacag

gaattcagtaagattgtaaaagctaagtcactcccttacacaggaattta
ccatcactaaggaagaaggaagtttcagaccaaaggagaaaccaaaaact
atagcagagttacacccatacacacgtatttacaatggcctaaggggaag
gtggactatacaagagactaaaataggtactatggcaagggcacgaagcc
cttgaccctggcttctaaggtggagcccttgttgatcccagctgttatca
atgtattctatcccaggtggttcccattagaccttttgtgtttgcattcc
tctgttttatgtaagattccagttacctcaattgtaccttgcgaatttgt
cacccaacttccttattgtcctctgcataaaaagtctgatgcttgattcg
aaaattacactcagattccacacgacctctcctgtgtgtgtctgtttgtc
attcatccacactttgcccacccgcatcgagagacccgttccacgcagac
acagggaccaagagcgtctgcggcactggggaccttgggaccctctggtg
ggttcgcgcctaagatctgaaaaatacattttttaataacaggaaagtaa
caaaactcatgtgacaacatcctcagagacacaccttaaggtgtgcctcg
tatgctgtatgtgttttttaatccaaccctcatatcccatcagctgccca
tcaaattacacagaaccttccattgtttgcaccattcctgagaatggctt
acacaaagacctcagaccatcttttctcccattttggcttctcacaagtg
acctatcagcaaacttccatctgatgaacttggaaagtgcaacaggtaat
tgatctctcagttcctcagctctcattcttagccaagtgctcatcatttg
acagaagttatctacattaccagtggctgcctacctcactctgtaaagtt
aacctacaggtccatccacctttcttgatgtgactcttagtggtattttt
ctcactgtctccaatctaaccacactgccatgcttcctccctgagtattc
cattctgtaaagctcacctgtgctgccaccctcagacctcagatactttc
tagtggcatgccatcgttctgtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78829934_78830991
seq2: B6Ng01-286C15.g_136_1192 (reverse)

seq1  TCAAACAGAAGGATTGTGCCATGCCACTAGAAAGTATCTGA-GTCTGA-G  48
      |||||||||| ||   || |||||||||||||||||||||| |||||| |
seq2  TCAAACAGAACGA---TGGCATGCCACTAGAAAGTATCTGAGGTCTGAGG  47

seq1  GTGGCAGCACAGTGAAGCTTTACAGAATGGAATACTCAGGGAGAAGGCAT  98
      ||||||||||||   |||||||||||||||||||||||||||| | ||||
seq2  GTGGCAGCACAGGTGAGCTTTACAGAATGGAATACTCAGGGAGGAAGCAT  97

seq1  GGCAGTGTGGTTAGAATTGAGACAGTGAGGAAAATACCACTAAGAGTCAC  148
      ||||||||||||||| | ||||||||||| ||||||||||||||||||||
seq2  GGCAGTGTGGTTAGATTGGAGACAGTGAGAAAAATACCACTAAGAGTCAC  147

seq1  ATCAAG-AAGGTGGATGGACCTGTAGGTTAACTTTACAGAGTGAGGTAGG  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAGGTGGATGGACCTGTAGGTTAACTTTACAGAGTGAGGTAGG  197

seq1  CAGCCACTGGTAATGTAGATAACTTCTGTCAAATGATGAGCACTTGGCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTGGTAATGTAGATAACTTCTGTCAAATGATGAGCACTTGGCTA  247

seq1  AGAATGAGAGCTGAGGAACTGAGAGATCAATTACCTGTTGCACTTTCCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAGCTGAGGAACTGAGAGATCAATTACCTGTTGCACTTTCCAA  297

seq1  GTTCATCAGATGGAAGTTTGCTGATAGGTCACTTGTGAGAAGCCAAAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAGATGGAAGTTTGCTGATAGGTCACTTGTGAGAAGCCAAAATG  347

seq1  GGAGAAAAGATGGTCCTGAGGTCTTTGTGTAAGCCATTCTCAGGAATGGT  397
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGATGGT-CTGAGGTCTTTGTGTAAGCCATTCTCAGGAATGGT  396

seq1  GCAAACAATGGAAGGTTCTGTGTAATTTGATGGGCAGCTGATGGGATATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAATGGAAGGTTCTGTGTAATTTGATGGGCAGCTGATGGGATATG  446

seq1  AGGGTTGGATTAAAAAACACATACAGCATACGAGGCACACCTTAAGGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGATTAAAAAACACATACAGCATACGAGGCACACCTTAAGGTGT  496

seq1  GTCTCTGAGGATGTTGTCACATGAGTTTTGTTACTTTCCTGTTATTAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAGGATGTTGTCACATGAGTTTTGTTACTTTCCTGTTATTAAAA  546

seq1  AATGTATTTTTCAGATCTTAGGCGCGAACCCACCAGAGGGTCCCAAGGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTTTCAGATCTTAGGCGCGAACCCACCAGAGGGTCCCAAGGTC  596

seq1  CCCAGTGCCGCAGACGCTCTTGGTCCCTGTGTCTGCGTGGAACGGGTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCCGCAGACGCTCTTGGTCCCTGTGTCTGCGTGGAACGGGTCTC  646

seq1  TCGATGCGGGTGGGCAAAGTGTGGATGAATGACAAACAGACACACACAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGCGGGTGGGCAAAGTGTGGATGAATGACAAACAGACACACACAGG  696

seq1  AGAGGTCGTGTGGAATCTGAGTGTAATTTTCGAATCAAGCATCAGACTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCGTGTGGAATCTGAGTGTAATTTTCGAATCAAGCATCAGACTTT  746

seq1  TTATGCAGAGGACAATAAGGAAGTTGGGTGACAAATTCGCAAGGTACAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGAGGACAATAAGGAAGTTGGGTGACAAATTCGCAAGGTACAAT  796

seq1  TGAGGTAACTGGAATCTTACATAAAACAGAGGAATGCAAACACAAAAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAACTGGAATCTTACATAAAACAGAGGAATGCAAACACAAAAGGT  846

seq1  CTAATGGGAACCACCTGGGATAGAATACATTGATAACAGCTGGGATCAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGAACCACCTGGGATAGAATACATTGATAACAGCTGGGATCAAC  896

seq1  AAGGGCTCCACCTTAGAAGCCAGGGTCAAGGGCTTCGTGCCCTTGCCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTCCACCTTAGAAGCCAGGGTCAAGGGCTTCGTGCCCTTGCCATA  946

seq1  GTACCTATTTTAGTCTCTTGTATAGTCCACCTTCCCCTTAGGCCATTGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATTTTAGTCTCTTGTATAGTCCACCTTCCCCTTAGGCCATTGTA  996

seq1  AATACGTGTGTATGGGTGTAACTCTGCTATAGTTTTTGGTTTCTCCTTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTGTGTATGGGTGTAACTCTGCTATAGTTTTTGGTTTCTCCTTTG  1046

seq1  GTCTGAAACTT  1058
      |||||||||||
seq2  GTCTGAAACTT  1057


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