BAC Information

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BAC

Clone NameB6Ng01-286D22
Chromosome13 (Build37)
Map Location 64,578,714 - 64,726,522
singlet/doubletdoublet
Overlap gene1190003K10Rik, LOC218298, Ppia-ps13_866.1
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612
Downstream geneLOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286D22.bB6Ng01-286D22.g
ACCGA084492GA084493
length1,1881,146
definitionB6Ng01-286D22.b B6Ng01-286D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,725,332 - 64,726,522)(64,578,714 - 64,579,857)
sequence
gaattctgtatctttgaaggaggaatggaattcaatacatacataacatg
ataaggagcctcctaatttagatatgattccgaaactttacggtattttt
aaaacatcatttgtgtgtgtgtgtgtgtgtgtgagagagagagagagaca
gagacagagacagagacagacagagacagagagagagacagagagagaga
ggagtcaagatgttttgtgccaaacaggtttattaaaagtacaacatcct
gtatactgtttgcaaggggaaataggacagagtgagaagaagttatcaat
ggggcacaatcagcatgaagctagtcaagcaatgctgcacgaagggaaca
cacgatatttcaagtacatcacagaccaagcacatggcagccttagaact
gccaaccatggctttgcagacaccactgttgcttttcgtcgcttgctgca
gccatggtcaaccccaccgtgttctttgacatcacggctgatgacaagct
cttgggccgcgtctccttcgagctgtttgcagacaaagttccaaagacag
cagaaaaactttcaagccctgagcactggagagaaaggatttggctataa
ggcttcctcctttcacagaattattccaggattcatgtgtcagggtggtg
actttacatgccataatggcactggcggcaggtccatctatggagaaaaa
tttgagaatgagaacttcatcctgaagcatacaggtcctggcatcttgtc
catggcaaatgctggaccaaacacaaacggttcccagttttttatctgca
ctgccaagactgaatggctggatggcaagcatgtgggtctttgggaagga
gaaagaaggcatgaacatttgtggaaagccatgggagcgttttgggtcca
ggaatggcaagaccagcaagaagaccactattcccaactgtggacaactc
taatttcttttgacttgcggacgttttaccatcaaccattccttctgtag
ctcaggagagcacccccaccccatctgctcgcaatgtcctgtaattctct
gctctcactgagtcttggggtttcaatatttcctcatccctcaagtctag
ctggaattgcaagttagttatggatatgaataaaactaattaggaaaaaa
ggactgccaaccatgcccttttagaacagagggaaggg
gaattccacttgaaccaagagttcaggactaggctggacttggaagggaa
agaaaagggagagaaaagccaaaagacaagaaacagtagagaagagagcc
agttgtagttgctgataatcctagcaccgggggcctgagtcaggaggatc
aagagttctgagtcatatacagagacattctcaaaattaaataaataaaa
ataaaaggaaaagcaatcaattaacccacatctatatgcaatttactcaa
ccttaacaaaaagcagatctgactccttctattctaataggcctacaaca
aattaagacagaataggctacaagaatgaaaataatctcagattttgaaa
aattacttgcctatctttttgagtattcatgatgaatgctttataatgtc
agccacaggcagcctgtaggacattcatatacttttccctttcctgattt
ttaatttttttgccacaatcatgcaagtaatttattattttggaagaaag
ctcattatagccaaagctgttgcaagagtctcatgttaatgatacaatcc
catttctttttctttcttcacagtctacatattcaaagagagtattgtgt
gagtcagagctaatggaatcgactcgggctccttcctaaagtaccccccc
gcctgtccttgtcaaggtcttgtttggaggcctggccctgtgcctggtct
tcactttatcatggtttttagggtggggatggggttgcccagtgctgtat
tataaatgatcctctgtttacccagctgactgggtatcacccatctcctc
tgtcagctcaggacagtaaatcttttcctaaccagtgtctcccgtctgtc
tcccacagacagtgatgcctccagcaatggagttgcctgggagtactatt
gtacctccttgcctggggtgccccagaatatccctgggggctctgaaatc
ttgcacctaaattacttttgtggagagggaacactccctgctttcagttt
ttcctgtggagtgatgttcttccagcagtccaaatgaaaaaagccatctt
tctcagtacttcaacaatgctaaggtgtaaaaaaaacttagttttggtgt
gtatggtttttattttttgtttttggaggggggcaatctgaatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64725332_64726522
seq2: B6Ng01-286D22.b_45_1232 (reverse)

seq1  CCCTTC---CTG-TCTAAAAGGCCATGGTTGGCAGTTCTTTTTTTTTCTT  46
      ||||||   ||| ||||||||| ||||||||||||| |   ||||||| |
seq2  CCCTTCCCTCTGTTCTAAAAGGGCATGGTTGGCAGTCC---TTTTTTCCT  47

seq1  ATTTAGTTTTTATTCATAATCATAAACTTAACTTTGCAA-TCCAGCTAGA  95
      | |||| |||||||||||  |||||   |||| |||||| ||||||||||
seq2  AATTAG-TTTTATTCATATCCATAA--CTAAC-TTGCAATTCCAGCTAGA  93

seq1  CTTGAAGGGGAATGAGGAAAATATGGAACCCAAAGAACTTCAGTGAGAGC  145
      |||||   || |||||||||   || ||||| ||||   |||||||||||
seq2  CTTGA---GGGATGAGGAAATATTGAAACCCCAAGA--CTCAGTGAGAGC  138

seq1  AGAG-ATTACAGGACATTGCGAGCAGATGGGGT-GGGGTGCTCTCCTGAG  193
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGAATTACAGGACATTGCGAGCAGATGGGGTGGGGGTGCTCTCCTGAG  188

seq1  CTACAGAAGGAATGGTTTGATGGGTAAAACGTCCGCAAGTCAAAAGAAAT  243
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CTACAGAAGGAATGG-TTGAT-GGTAAAACGTCCGCAAGTCAAAAGAAAT  236

seq1  TAGAGTTGTCCACAGTTGGAAATAGTGGTCTTCTTGCTGGTCTTGCCATT  293
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAGTTGTCCACAGTTGGGAATAGTGGTCTTCTTGCTGGTCTTGCCATT  286

seq1  CCTGGACCCAAAACGCT-CCATGGC-TTCCAC-AATGTTCATGCCTTCTT  340
      ||||||||||||||||| ||||||| |||||| |||||||||||||||||
seq2  CCTGGACCCAAAACGCTCCCATGGCTTTCCACAAATGTTCATGCCTTCTT  336

seq1  TCTCCTTCCCAAAGA-CCACATGCTTGCCATCCAGCCATTCAGTCTTGGC  389
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCCAAAGACCCACATGCTTGCCATCCAGCCATTCAGTCTTGGC  386

seq1  AGTGCAGATAAAAAACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGATAAAAAACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCA  436

seq1  TGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATTCTCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATTCTCA  486

seq1  AATTTTTCTCCATAGATGGACCTGCCGCCAGTGCCATTATGGCATGTAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTCCATAGATGGACCTGCCGCCAGTGCCATTATGGCATGTAAA  536

seq1  GTCACCACCCTGACACATGAATCCTGGAATAATTCTGTGAAAGGAGGAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACCCTGACACATGAATCCTGGAATAATTCTGTGAAAGGAGGAAG  586

seq1  CCTTATAGCCAAATCCTTTCTCTCCAGTGCTCAGGGCTTGAAAGTTTTTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAGCCAAATCCTTTCTCTCCAGTGCTCAGGGCTTGAAAGTTTTTC  636

seq1  TGCTGTCTTTGGAACTTTGTCTGCAAACAGCTCGAAGGAGACGCGGCCCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTTGGAACTTTGTCTGCAAACAGCTCGAAGGAGACGCGGCCCA  686

seq1  AGAGCTTGTCATCAGCCGTGATGTCAAAGAACACGGTGGGGTTGACCATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGTCATCAGCCGTGATGTCAAAGAACACGGTGGGGTTGACCATG  736

seq1  GCTGCAGCAAGCGACGAAAAGCAACAGTGGTGTCTGCAAAGCCATGGTTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCAAGCGACGAAAAGCAACAGTGGTGTCTGCAAAGCCATGGTTG  786

seq1  GCAGTTCTAAGGCTGCCATGTGCTTGGTCTGTGATGTACTTGAAATATCG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTAAGGCTGCCATGTGCTTGGTCTGTGATGTACTTGAAATATCG  836

seq1  TGTGTTCCCTTCGTGCAGCATTGCTTGACTAGCTTCATGCTGATTGTGCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCCTTCGTGCAGCATTGCTTGACTAGCTTCATGCTGATTGTGCC  886

seq1  CCATTGATAACTTCTTCTCACTCTGTCCTATTTCCCCTTGCAAACAGTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATAACTTCTTCTCACTCTGTCCTATTTCCCCTTGCAAACAGTAT  936

seq1  ACAGGATGTTGTACTTTTAATAAACCTGTTTGGCACAAAACATCTTGACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTTGTACTTTTAATAAACCTGTTTGGCACAAAACATCTTGACT  986

seq1  CCTCTCTCTCTCTGTCTCTCTCTCTGTCTCTGTCTGTCTCTGTCTCTGTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCTGTCTCTCTCTCTGTCTCTGTCTGTCTCTGTCTCTGTC  1036

seq1  TCTGTCTCTCTCTCTCTCTCACACACACACACACACACACAAATGATGTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCTCTCTCACACACACACACACACACACAAATGATGTT  1086

seq1  TTAAAAATACCGTAAAGTTTCGGAATCATATCTAAATTAGGAGGCTCCTT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACCGTAAAGTTTCGGAATCATATCTAAATTAGGAGGCTCCTT  1136

seq1  ATCATGTTATGTATGTATTGAATTCCATTCCTCCTTCAAAGATACAGAAT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTATGTATGTATTGAATTCCATTCCTCCTTCAAAGATACAGAAT  1186

seq1  TC  1191
      ||
seq2  TC  1188

seq1: chr13_64578714_64579857
seq2: B6Ng01-286D22.g_70_1215

seq1  GAATTCCACTTGAACCAAGAGTTCAGGACTAGGCTGGACTTGGAAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGAACCAAGAGTTCAGGACTAGGCTGGACTTGGAAGGGAA  50

seq1  AGAAAAGGGAGAGAAAAGCCAAAAGACAAGAAACAGTAGAGAAGAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGAGAGAAAAGCCAAAAGACAAGAAACAGTAGAGAAGAGAGCC  100

seq1  AGTTGTAGTTGCTGATAATCCTAGCACCGGGGGCCTGAGTCAGGAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGTTGCTGATAATCCTAGCACCGGGGGCCTGAGTCAGGAGGATC  150

seq1  AAGAGTTCTGAGTCATATACAGAGACATTCTCAAAATTAAATAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCTGAGTCATATACAGAGACATTCTCAAAATTAAATAAATAAAA  200

seq1  ATAAAAGGAAAAGCAATCAATTAACCCACATCTATATGCAATTTACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAAAAGCAATCAATTAACCCACATCTATATGCAATTTACTCAA  250

seq1  CCTTAACAAAAAGCAGATCTGACTCCTTCTATTCTAATAGGCCTACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACAAAAAGCAGATCTGACTCCTTCTATTCTAATAGGCCTACAACA  300

seq1  AATTAAGACAGAATAGGCTACAAGAATGAAAATAATCTCAGATTTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGACAGAATAGGCTACAAGAATGAAAATAATCTCAGATTTTGAAA  350

seq1  AATTACTTGCCTATCTTTTTGAGTATTCATGATGAATGCTTTATAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTGCCTATCTTTTTGAGTATTCATGATGAATGCTTTATAATGTC  400

seq1  AGCCACAGGCAGCCTGTAGGACATTCATATACTTTTCCCTTTCCTGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGCAGCCTGTAGGACATTCATATACTTTTCCCTTTCCTGATTT  450

seq1  TTAATTTTTTTGCCACAATCATGCAAGTAATTTATTATTTTGGAAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTGCCACAATCATGCAAGTAATTTATTATTTTGGAAGAAAG  500

seq1  CTCATTATAGCCAAAGCTGTTGCAAGAGTCTCATGTTAATGATACAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATAGCCAAAGCTGTTGCAAGAGTCTCATGTTAATGATACAATCC  550

seq1  CATTTCTTTTTCTTTCTTCACAGTCTACATATTCAAAGAGAGTATTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTTCTTTCTTCACAGTCTACATATTCAAAGAGAGTATTGTGT  600

seq1  GAGTCAGAGCTAATGGAATCGACTCGGGCTCCTTCCTAAAGTACCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGCTAATGGAATCGACTCGGGCTCCTTCCTAAAGTACCCCCCC  650

seq1  GCCTGTCCTTGTCAAGGTCTTGTTTGGAGGCCTGGCCCTGTGCCTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTTGTCAAGGTCTTGTTTGGAGGCCTGGCCCTGTGCCTGGTCT  700

seq1  TCACTTTATCATGGTTTTTAGGGTGGGGATGGGGTTGCCCAGTGCTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATCATGGTTTTTAGGGTGGGGATGGGGTTGCCCAGTGCTGTAT  750

seq1  TATAAATGATCCTCTGTTTACCCAGCTGACTGGGTATCACCCATCTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGATCCTCTGTTTACCCAGCTGACTGGGTATCACCCATCTCCTC  800

seq1  TGTCAGCTCAGGACAGTAAATC-TTTCCTAACCAGTGTCTCCCGTCTGTC  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCAGCTCAGGACAGTAAATCTTTTCCTAACCAGTGTCTCCCGTCTGTC  850

seq1  TCCCACAGACAGTGATGCCTCCAGCAATGGAGTTGCCTGGGAGTACTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGACAGTGATGCCTCCAGCAATGGAGTTGCCTGGGAGTACTATT  900

seq1  GTACCTCCTTGCCT-GGGTGCCCCAAGATATCCCTGGGGGCTCTGAAATC  948
      |||||||||||||| ||||||||||  |||||||||||||||||||||||
seq2  GTACCTCCTTGCCTGGGGTGCCCCAGAATATCCCTGGGGGCTCTGAAATC  950

seq1  TTGCACCTAAATTAC-TTTGTGGAGAGGG-ACACTCCCTGCTTTCAG-TT  995
      ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
seq2  TTGCACCTAAATTACTTTTGTGGAGAGGGAACACTCCCTGCTTTCAGTTT  1000

seq1  TTCCTGTGGAGTGATGTT-TTTCAGCAGTCCCAAATGAAAAA--GCATCT  1042
      |||||||||||||||||| || ||||||| ||||||||||||   |||||
seq2  TTCCTGTGGAGTGATGTTCTTCCAGCAGT-CCAAATGAAAAAAGCCATCT  1049

seq1  TTCTCAGTATACTTTCAACAATGCT-AGGTGTAAAAATAACTTAGGTTTT  1091
      |||||||||    |||||||||||| ||||||||||| |||||| |||||
seq2  TTCTCAGTA---CTTCAACAATGCTAAGGTGTAAAAAAAACTTA-GTTTT  1095

seq1  TGTGTGTATGTGTTTTTTTTTTTTGTTTTTTTTGAGGGGTGGCATCTG-A  1140
       ||||||||| |||||| |||||||  ||||| |||||| |  ||||| |
seq2  GGTGTGTATG-GTTTTTATTTTTTG--TTTTTGGAGGGGGGCAATCTGAA  1142

seq1  TCTC  1144
      ||||
seq2  TCTC  1146