BAC Information

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BAC

Clone NameB6Ng01-286E19
Chromosome13 (Build37)
Map Location 29,869,390 - 29,870,498
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286E19.bB6Ng01-286E19.g
ACCGA084532GA084533
length1,2431,120
definitionB6Ng01-286E19.b B6Ng01-286E19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaatgaaacacatatcgagcttaaagctacatccatatataga
agaaagcatgtaatgtttgtctaagttgagataattgtttccatttccac
ctatttatcactgaatgtccttatttcataaattcattgtgcattctcca
gtgtaaatgggtaacattttcatcatccattcatctatggacgaataccc
aggctgcttccacttcctggtaactgtgaagagagcatcagtgaacacat
gcgcgtaagcatccgtacagagagacagaaaatcctctgggcagagctgg
attttgaggtagattgaccccagcttcttgaggaaccttcatactgactt
ccatagtagcttaccggtttgtactcctcctggaagtgaataagtatgca
agtgttcccctttccccaaagctccgctggcagataatgccatttggggc
tttgtttacttggggccttgttttgtttttagccttggccattctgactg
aaataagatgaaatatcaaagtactttcactttttctagtgtttcttagc
tatttgtgttttatcttttgagaactctagttccatataccattttttaa
aacatattgtttgtgtccttgatgcttaattttttttgagttatctatat
attctagatactaacatttgttaggattctctaacaagaccaaactgata
caatgaatatatgtttgtataaagtgacatagagaatgaatatacatagt
atttattagagtgtcttgtggattatgggccaactactctaacaatattg
tctcccaatgggaagtccaagaatctagtagttgttcagtctacaatgtt
gggtgtattagctggtattcagtacacactagaattcaaagaagtaggct
ctaataccagtaaagaaatgaaagtgccagggaaagtaaggcagcagaca
aaaattagagcttttctttccttttctcttctcttctttatcttcctccc
ctcctctccagatacggataaccagaataccagaaggtatgggcccagca
tttatgctggaccttaacacctttaatggatccatcatccaaataccttc
accggatacccagaaacttgatttaggtccattcccgatgtgaggtacaa
gtggaaagcaaatagccactcctcggagatccatggtagggttttgtcca
atacatatgcctctgccaagacacatgtgtgccatttcgccta
gaattcctatatgttatttttaaatgtgttccaagtgtcccagtgagcaa
ctgtttggttgctgctcctgctttgccacactgagagcttcctcagcgtg
gatggcagtgggggagcttgtgtccctgactgctttgcttatgtgaaata
gcatcacggttaagatggctttccaactggatagaaagatgcaagcactt
attttcactttacaagttcagtaacatccacgtgtaccagtgtaaatgcc
taacatcagaagtcagaatgcagaatcgtgtgcctattggtaggaacagc
gtggcttttttcagtcatggatgagggaagtgcgctcattgtgagtcata
gttctaaggccaaattgggggaaaagaaaaggagaaaaattcggccagta
tgatgcctcagaaatagaaaagtgtcatgaaaattgaccaccccccaaaa
aaaagtgaactgagaaaactattgtgatgcctgttctagatgtttcctta
gtgcacccatgaggattaggtagtccagtaggacaaacgaaaggcacaaa
aaatgagcagaactccaaaacagcacggaaagcttttcaagttatgataa
gagggctttattcggacttatcactgggaccctcttttccaccagattgt
caagagttcaaaggtgacatcccatccagtgggcaaggttaggacagcac
tcttggtcctcttcttgggtgtgtaatgatataccctgtctagggctttt
aacagtctgcaaggacatttcaagatttagtctttggtttaacagttcca
ctgtttatattgataccagaggaaacctgggaaaatgtcaaggttcacac
agagtcacctacagtgtcacatacacacacacgtacacacacacacacac
acacacacacacacacacacacacacgtacacacacacatacacacacac
acacgtacacacacacacacatacacacacacacacacacatcgcacaca
cacacacatacacacccagctcacaggagacaggacttgcgacacatgaa
gtttcattggaagtactgcctaaaatagtgaaccactttttaaatactgg
tgggtttaaaatgtagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29869390_29870498
seq2: B6Ng01-286E19.g_68_1187 (reverse)

seq1  ACTGCTACA-TTTAAACCCA-CAGTATTT-AAAAGT-GTTCACTATTTTA  46
      ||||||||| |||||||||| |||||||| |||||| |||||||||||||
seq2  ACTGCTACATTTTAAACCCACCAGTATTTAAAAAGTGGTTCACTATTTTA  50

seq1  -GCAGTACTT-CAATG-AACTTCATGTGTCTGCATGT-CTGTCT-CTGTG  91
       ||||||||| ||||| ||||||||||||| ||| || |||||| |||||
seq2  GGCAGTACTTCCAATGAAACTTCATGTGTC-GCAAGTCCTGTCTCCTGTG  99

seq1  TG-TGTGTGTGTGTGTGTGTGTGTGTGTG-TGTGTGTGTGTGTGTGTGTA  139
       | || |||||| |||||||||||||| | ||||||||||||||||||||
seq2  AGCTGGGTGTGTATGTGTGTGTGTGTGCGATGTGTGTGTGTGTGTGTGTA  149

seq1  TGTGTGTGTGTGTGTACGTGTGTGTGTGTGTATGTGTGTGTGTACGTGTG  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTACGTGTGTGTGTGTGTATGTGTGTGTGTACGTGTG  199

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGTGTGTA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGTGTGTA  249

seq1  TGTGACACTGTAGGTGACTCTGTGTG-ACCCTGACATTTTCCCAGGTTTC  288
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TGTGACACTGTAGGTGACTCTGTGTGAACCTTGACATTTTCCCAGGTTTC  299

seq1  CTCTGGTATCAATATAAACAGTGGAACTGTTAAACCAAAGACTAAATCTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTATCAATATAAACAGTGGAACTGTTAAACCAAAGACTAAATCTT  349

seq1  GAAATGTCCTTGCAGACTGTTAAAAGCCCTAGACAGGGTATATCATTACA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCCTTGCAGACTGTTAAAAGCCCTAGACAGGGTATATCATTACA  399

seq1  CACCCAAGAAGAGGACCAAGAGTGCTGTCCTAACCTTGCCCACTGGATGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGAAGAGGACCAAGAGTGCTGTCCTAACCTTGCCCACTGGATGG  449

seq1  GATGTCACCTTTGAACTCTTGACAATCTGGTGGAAAAGAGGGTCCCAGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCACCTTTGAACTCTTGACAATCTGGTGGAAAAGAGGGTCCCAGTG  499

seq1  ATAAGTCCGAATAAAGCCCTCTTATCATAACTTGAAAAGCTTTCCGTGCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCGAATAAAGCCCTCTTATCATAACTTGAAAAGCTTTCCGTGCT  549

seq1  GTTTTGGAGTTCTGCTCATTTTTTGTGCCTTTCGTTTGTCCTACTGGACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGAGTTCTGCTCATTTTTTGTGCCTTTCGTTTGTCCTACTGGACT  599

seq1  ACCTAATCCTCATGGGTGCACTAAGGAAACATCTAGAACAGGCATCACAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATCCTCATGGGTGCACTAAGGAAACATCTAGAACAGGCATCACAA  649

seq1  TAGTTTTCTCAGTTCACTTTTTTTTGGGGGGTGGTCAATTTTCATGACAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTCAGTTCACTTTTTTTTGGGGGGTGGTCAATTTTCATGACAC  699

seq1  TTTTCTATTTCTGAGGCATCACACTGGCCGAATTTTTCTCCTTTTCTTTT  738
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTCTATTTCTGAGGCATCATACTGGCCGAATTTTTCTCCTTTTCTTTT  749

seq1  CCCCCAATTTGGCCTTAGAACTATGACTCACAATGAGCGCACTTCCCTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATTTGGCCTTAGAACTATGACTCACAATGAGCGCACTTCCCTCA  799

seq1  TCCATGACTGAAAAAAGCCACGCTGTTCCTACCAATAGGCACACGATTCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACTGAAAAAAGCCACGCTGTTCCTACCAATAGGCACACGATTCT  849

seq1  GCATTCTGACTTCTGATGTTAGGCATTTACACTGGTACACGTGGATGTTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGACTTCTGATGTTAGGCATTTACACTGGTACACGTGGATGTTA  899

seq1  CTGAACTTGTAAAGTGAAAATAAGTGCTTGCATCTTTCTATCCAGTTGGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGTAAAGTGAAAATAAGTGCTTGCATCTTTCTATCCAGTTGGA  949

seq1  AAGCCATCTTAACCGTGATGCTATTTCACATAAGCAAAGCAGTCAGGGAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCTTAACCGTGATGCTATTTCACATAAGCAAAGCAGTCAGGGAC  999

seq1  ACAAGCTCCCCCACTGCCATCCACGCTGAGGAAGCTCTCAGTGTGGCAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCCCCCACTGCCATCCACGCTGAGGAAGCTCTCAGTGTGGCAAA  1049

seq1  GCAGGAGCAGCAACCAAACAGTTGCTCACTGGGACACTTGGAACACATTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCAGCAACCAAACAGTTGCTCACTGGGACACTTGGAACACATTT  1099

seq1  AAAAATAACATATAGGAATTC  1109
      |||||||||||||||||||||
seq2  AAAAATAACATATAGGAATTC  1120