BAC Information

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BAC

Clone NameB6Ng01-286O18
Chromosome13 (Build37)
Map Location 110,497,482 - 110,498,524
singlet/doubletsinglet
Overlap genePde4d
Upstream geneLOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286O18.bB6Ng01-286O18.g
ACCGA084987GA084988
length1,1741,064
definitionB6Ng01-286O18.b B6Ng01-286O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacatctccccc
tatccttttaataagagcaaataggccacccatattaatgagagtggaga
tagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggattag
ctcttaggctcacaggcttttacccagagcaaccctgacctgctcccgtg
tcgttttgcctgggggaagggaactaggacactgaaccttcatgaaagat
gacatgtctccctagaataggctcatatatgccgcagagcctttccattg
cagtgcttagccgtgcaactctctcgggctgctgaagcacactcactcta
tcccgtgcaatgagtctagcctcatgggatataagagctgagtggccagc
gacctattgcctaagcatagatatatcatatatcagggggagctccatgt
tctagtcctgcaagcgcctgggcaataaccaccttgtctctcctagtttg
ggccttaagcttacagaccaatcaaagaagcaacactaatccacagcaaa
gtgtatctccaaataatattaattccacccaattttttaaagaaaggaaa
atgctgaggagatccaattgggtaatcctttggtcagcgacaggtccaag
cgcgtggagttgacctgaagtctcaattcccgaaggatctgttcaattca
gccatccaattctgtaacatatactgaaaaagactttttgacaatttagc
tgccctagtaaatttaacatactgaatggaaaataacacacaatcccgga
aactttgtcacatccctgctgagttatttgtcattatacatctagtgtat
ctggacagatctatgagtgataccagcatgagacctcctgtatctgacat
agctgagctgtcatctatgacctgtagtcactgagcctgacaaagtgtat
gcgttcaggtcaatctgactgtccgacgagtccagctgtctggattagca
accagttctaggttagtggtgata
gaattccactccgtccctcctcacacacacacaaaaggaggagtctgaag
atggctgcatgctttcccttttgtgcttggcggttggctgataggtgggg
aaggcccttgggtggtgtattggttttggttttttagaacagccttttgg
ggatctgagtcacagagtagccacccatacacactgcagagtccattgtt
tgtagcgcatccacaattatgcaactacaatcaatttgagacctaattac
tccttgaagaagctcctaactctagctaacaagccccagctccctgtgcc
tctccattctgtggctcagagcagccgtttcctttgtgcatttgcctgac
cagtgtatttgatatgatatgtagtctcctgtgacttgattctttcactt
ggtacattaccaaggtacatacatcctgcagtgttgtcaggtctctttct
ttctaagagtcttcttagccttttgtttgttttcattgagactgaaaatt
tgtgattttcccaacttactgcttctggagatctcaggattataggattt
tatcaatagcacaacttcattcttttttatgatcaaataagttttaatca
ttcattcattcattcattcattcattcattggttaacatccaagctgtct
tactgatggctatttattttcactgcataaaatatttatgtaaagatttt
atatgtgcataaaatttcattcctatagatgtctaatgaattactaggat
tgctgggccatataatgatttatggttttttgtttgtttgtttgttttgt
tttctgtttttcaaatctatttgtagtcccatcctttttgactagagaat
ttctagactagagttattctattgagtggcttggagtgttgctcagttag
ttccttgggcatatttttcctgtagatcattttttggcatggcatttccc
tccggatggtgaaagtgtgctcctttaatagttgcttctctcttcctaaa
gcactcattcttacattccctcagaatgaaagttgaaaagtttacaggcc
taagaaagggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110497482_110498524
seq2: B6Ng01-286O18.g_70_1133

seq1  GAATTCCACTCCGTCCCTCCTCACACACACACAAAAGGAGGAGTCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCGTCCCTCCTCACACACACACAAAAGGAGGAGTCTGAAG  50

seq1  ATGGCTGCATGCTTTCCCTTTTGTGCTTGGCGGTTGGCTGATAGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCATGCTTTCCCTTTTGTGCTTGGCGGTTGGCTGATAGGTGGGG  100

seq1  AAGGCCCTTGGGTGGTGTATTGGTTTTGGTTTTTTAGAACAGCCTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTTGGGTGGTGTATTGGTTTTGGTTTTTTAGAACAGCCTTTTGG  150

seq1  GGATCTGAGTCACAGAGTAGCCACCCATACACACTGCAGAGTCCATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAGTCACAGAGTAGCCACCCATACACACTGCAGAGTCCATTGTT  200

seq1  TGTAGCGCATCCACAATTATGCAACTACAATCAATTTGAGACCTAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCGCATCCACAATTATGCAACTACAATCAATTTGAGACCTAATTAC  250

seq1  TCCTTGAAGAAGCTCCTAACTCTAGCTAACAAGCCCCAGCTCCCTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGAAGCTCCTAACTCTAGCTAACAAGCCCCAGCTCCCTGTGCC  300

seq1  TCTCCATTCTGTGGCTCAGAGCAGCCGTTTCCTTTGTGCATTTGCCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTCTGTGGCTCAGAGCAGCCGTTTCCTTTGTGCATTTGCCTGAC  350

seq1  CAGTGTATTTGATATGATATGTAGTCTCCTGTGACTTGATTCTTTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATTTGATATGATATGTAGTCTCCTGTGACTTGATTCTTTCACTT  400

seq1  GGTACATTACCAAGGTACATACATCCTGCAGTGTTGTCAGGTCTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATTACCAAGGTACATACATCCTGCAGTGTTGTCAGGTCTCTTTCT  450

seq1  TTCTAAGAGTCTTCTTAGCCTTTTGTTTGTTTTCATTGAGACTGAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAGTCTTCTTAGCCTTTTGTTTGTTTTCATTGAGACTGAAAATT  500

seq1  TGTGATTTTCCCAACTTACTGCTTCTGGAGATCTCAGGATTATAGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTCCCAACTTACTGCTTCTGGAGATCTCAGGATTATAGGATTT  550

seq1  TATCAATAGCACAACTTCATTCTTTTTTATGATCAAATAAGTTTTAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATAGCACAACTTCATTCTTTTTTATGATCAAATAAGTTTTAATCA  600

seq1  TTCATTCATTCATTCATTCATTCATTCATTGGTTAACATCCAAGCTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTCATTCATTCATTCATTCATTGGTTAACATCCAAGCTGTCT  650

seq1  TACTGATGGCTATTTATTTTCACTGCATAAAATATTTATGTAAAGATTTT  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACTGATGGCTATTTATTTTCACTGCATAAAATATTTATGTAAAGA-TTT  699

seq1  TATATGTGCATAAAATTTCATTCCTATAGATGTCTAATGAATTACTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGCATAAAATTTCATTCCTATAGATGTCTAATGAATTACTAGGA  749

seq1  TTGCTGGGCCATATAATGATTTATGGTTTTTTGTTTGTTTGTTTG-TTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGCTGGGCCATATAATGATTTATGGTTTTTTGTTTGTTTGTTTGTTTTG  799

seq1  TTTTCTGTTTTTCAAATCTATTTGTAGTCCCATCCTTTTTGACTAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTTTTCAAATCTATTTGTAGTCCCATCCTTTTTGACTAGAGAA  849

seq1  -TTCTAGACTAGAGTTATTCTATTGAGTGGC-TGGAGTGTTGCTCAGTTA  897
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCTAGACTAGAGTTATTCTATTGAGTGGCTTGGAGTGTTGCTCAGTTA  899

seq1  G-TCCTT-GGCATA-TTTTCCTGTAGATCA-TTTTTGGCATGGCA-TTCC  942
      | ||||| |||||| ||||||||||||||| |||||||||||||| ||||
seq2  GTTCCTTGGGCATATTTTTCCTGTAGATCATTTTTTGGCATGGCATTTCC  949

seq1  CT-CGGAT-GTGGAAGTGTGCTC--TGTATAAGTGCT--TCTCTTCCT-A  985
      || ||||| ||| ||||||||||  |  |||  ||||  ||||||||| |
seq2  CTCCGGATGGTGAAAGTGTGCTCCTTTAATAGTTGCTTCTCTCTTCCTAA  999

seq1  AGCAC-CAT--CTACAATTCCTCAGAATG-AAGGTGAAA--GTTACAGGC  1029
      ||||| |||   |||| | |||||||||| ||| |||||   ||||||||
seq2  AGCACTCATTCTTACATTCCCTCAGAATGAAAGTTGAAAAGTTTACAGGC  1049

seq1  AT-AGGAAGGGTGGT  1043
       | || |||||||||
seq2  CTAAGAAAGGGTGGT  1064