BAC Information

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BAC

Clone NameB6Ng01-287P18
Chromosome13 (Build37)
Map Location 68,286,159 - 68,287,300
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222
Downstream geneAA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287P18.bB6Ng01-287P18.g
ACCGA085765GA085766
length1,1331,173
definitionB6Ng01-287P18.b B6Ng01-287P18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaactgtaattccaagaatgatgtcccaccctcctgacattgcg
tgacttctgggattgaactctggtcctcctgttttagccactgtgctatt
tccccagccctccccctgctttcacaggactctcattccttccataattt
gtagcccctatatccagaaccttttatgttctacttctcaaaagattgaa
ttctgatcttctgctgtttggagcctctgagaccgtcttggtgacatggg
atgaggggtgtgatgaggatagacttgcttcctgtacagacattcaacta
accccttccctgaagccccactcttccttcctgggcattattgtgaccct
gtggccacttgctgctttgtcttccactgagtgaattgaatgtaagcagt
tacaggcctctaagctgattatcacctgctccctgtttgttccttcactt
ccaacatatgtgggtgccccctagtcagatcctctcttacttttttaaaa
taaaaaaatttatgatgtcattatattacttctcctctttcatttccttc
ctgcaatccaccccatgttttttctggccagtcatttccctcttccccca
atttctctctacatggtttccccattttttgacaattacacacacacaca
cacacacacacacacacacacacacacacacacacacacatatatatata
tatatatactcattaacatattagtacaacccaatgagactatttagtgt
tgattgtatgtgtatgatttcagggctgcccacatgacattagataacaa
ttaggatggtcatctctggagagactaattctttctttctctgacttaag
aaggaatcagatttgtaagaactgaagcccagtgccaaataacagaaatc
tgacccaagacaacagcctggaaggcccatcactgagacatcaacaccgt
gacttctgacaggaacacacacaaaagtgaaagaactggggttaagttgc
ctttcaaaggaagagaggtgcagtgtcaactgagtcaagggttcttgagt
tagataaaggttaattttacatcatcattcatggtgttaaacaccttatt
ggagtctggatatgttcacatgagatatttagg
gaattcttagataccgctggcttctacagactctagatacctgggttggc
gaccttagctgccccgttgtaccccctaaccaaggaagggggagtgtttt
tgtggaccccaaatcaccagaaagcctttaaagaaattaaaaaaaaaccc
tactgatggccagcctttgtctgacctaactaagccgtttactctttatg
tggaagagagatcaggggctgccagaggagtccttactcagactttggga
ctttaaaaaggccagtggcttacctatccaagaagttacaccttgttgcc
aacgggtggttttcttgcctgaaagctattgctgccctaactctgcttgt
taaggatgctgataagctcactctggaacagcaaatggctgtagtggcat
cccacacttttgaaagcagtacccaaaagccctctgactgatagatgatg
accaacgctccagggacacattaccagagcttttttgttgactaaatgag
tgaccgagtgaccttcgctcccctgctgtcctcaagcgaccctactgctc
gagacttcacctacttatcactgtgctgacattctggcagaagaaactgg
tactcgaaatgatctgaaggataagatcagccttggcctgagagttcaag
ctggtacacagatggcagtaacctcgaggttgaaggtaagcagaaggcag
gaaaagcagtacagtagtggacagaaagcaagtgatccaggccaccaccc
tccctgaagggacgtcggcccagaaagatgaacttgtgactttggtccaa
gctctataaatggcaaaagggaagtctacactgacagcaggtatgctttt
gccacctacagagcaatatacaaacaaagagggctgttgacatctgcaga
gaaagatctaagatgctttagttaaaggaaatcagatggcagaactaacc
gccaaacaggtggcccgaagatcatgatcctgcagtcaagagcctaaaga
tgctatatgtcagagagacagctttacagactttgacttgcagaagaatg
gtcaaagctgccaggctgtgctacggactaatatggaaacctttggtata
ctcttggaaagaagctcagacactgttgagcctactgggaagtaacttac
cagaatatagggccgcactaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68286159_68287300
seq2: B6Ng01-287P18.b_47_1179

seq1  GAATTCCAACTGTAATTTCAAGAATAATGTCCCACCCTCCTGACCTTTCG  50
      ||||||||||||||||| ||||||| |||||||||||||||||| || ||
seq2  GAATTCCAACTGTAATTCCAAGAATGATGTCCCACCCTCCTGACATTGCG  50

seq1  TGACTTCTGGGATTGAACTCTGGTCCTCCTGTTTTAGCCACTGTGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGGGATTGAACTCTGGTCCTCCTGTTTTAGCCACTGTGCTATT  100

seq1  TCCTCAGCCTTTCCCCTGCTTTCACAGGACTCTCATTCCTTCCATAATTT  150
      ||| ||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCCTCCCCCTGCTTTCACAGGACTCTCATTCCTTCCATAATTT  150

seq1  ATAGCCCCTATATCCAGAACCTTTTATGTTCTACTTCTCAAAGGATTGAA  200
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGCCCCTATATCCAGAACCTTTTATGTTCTACTTCTCAAAAGATTGAA  200

seq1  TTCTGATCTTCTACTGTTTGGAGCCTCTGAGACTGTCTTGGTGACATGGG  250
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TTCTGATCTTCTGCTGTTTGGAGCCTCTGAGACCGTCTTGGTGACATGGG  250

seq1  ATGAGGGGTGTGATGAGGACAGACTTGCTTCCTGTACAGACATTCAACTA  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAGGGGTGTGATGAGGATAGACTTGCTTCCTGTACAGACATTCAACTA  300

seq1  ACCCCTTCACTGAAGCCCCACTCTTCCTTCCTGGGCATTTCTGTGACCCT  350
      |||||||| ||||||||||||||||||||||||||||||  |||||||||
seq2  ACCCCTTCCCTGAAGCCCCACTCTTCCTTCCTGGGCATTATTGTGACCCT  350

seq1  GTGGCCACTTGCTGCTTTGTCTTCCACTGAGTGAATTGAATGTATGCAGT  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGGCCACTTGCTGCTTTGTCTTCCACTGAGTGAATTGAATGTAAGCAGT  400

seq1  TACAGGCCTCTAAGCTGATTATCACCTGCTCCCTGTTTGTTCTTTCACTT  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACAGGCCTCTAAGCTGATTATCACCTGCTCCCTGTTTGTTCCTTCACTT  450

seq1  CCAACATATGTGGGTGCCCCCTAGTCAGATACTCTCTTAATTTTTTAAAA  500
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  CCAACATATGTGGGTGCCCCCTAGTCAGATCCTCTCTTACTTTTTTAAAA  500

seq1  TAAAAAAATTTATGATGCCATTATCTTACTTCTCCTCTTTCATTTCCTTC  550
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TAAAAAAATTTATGATGTCATTATATTACTTCTCCTCTTTCATTTCCTTC  550

seq1  CTGCAATCCACCCCATGTCCTTTTAGGCCAGTCATTTCCCTCTTCCCCCA  600
      ||||||||||||||||||  |||  |||||||||||||||||||||||||
seq2  CTGCAATCCACCCCATGTTTTTTCTGGCCAGTCATTTCCCTCTTCCCCCA  600

seq1  CTTTCTCTCTACTTGGTTTCCCTATTTTTTGACAATTACACACACACACA  650
       ||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  ATTTCTCTCTACATGGTTTCCCCATTTTTTGACAATTACACACACACACA  650

seq1  CACACACACAAATATATATATATATATATATACATATATATATATGTATA  700
      |||||||||| | | | | | | | | | | ||                 
seq2  CACACACACACACACACACACACACACACACAC-----------------  683

seq1  TATATACATATATATATACATATATATACTCATTAACATATTAGTACAAC  750
         | ||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ---ACACACATATATATATATATATATACTCATTAACATATTAGTACAAC  730

seq1  CCAATGAGACTATTTAGTGTTGCTTTTATGTGTATGATTTCAGGGCTGCC  800
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  CCAATGAGACTATTTAGTGTTGATTGTATGTGTATGATTTCAGGGCTGCC  780

seq1  CACATGACATTAGATAACAATTAGGAAGGTCATCTCTGGAGAGACTAATT  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACATGACATTAGATAACAATTAGGATGGTCATCTCTGGAGAGACTAATT  830

seq1  CTCTCTTTCTCTGACTCAAGAAGGAATCAGATTTGTAAGAACTGAAG-CC  899
      || ||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  CTTTCTTTCTCTGACTTAAGAAGGAATCAGATTTGTAAGAACTGAAGCCC  880

seq1  AGTGCCAAATAACAGAAATCTGACCCAAGACAACAAGCCTGGA--GGCCA  947
      |||||||||||||||||||||||||||||||||| ||||||||  | |||
seq2  AGTGCCAAATAACAGAAATCTGACCCAAGACAAC-AGCCTGGAAGGCCCA  929

seq1  TCACTGAGACATCAACACCATGAC-TCTGACAGGGACACACACAAAAGTG  996
      ||||||||||||||||||| |||| ||||||||| |||||||||||||||
seq2  TCACTGAGACATCAACACCGTGACTTCTGACAGGAACACACACAAAAGTG  979

seq1  -AAGAACT-GGGTTAAGGTTGCTTTCACAGGAAGA---GTGCAGTGTCAA  1041
       ||||||| |||||||| |  |||||| |||||||   ||||||||||||
seq2  AAAGAACTGGGGTTAAGTTGCCTTTCAAAGGAAGAGAGGTGCAGTGTCAA  1029

seq1  CTGAGTTCAAGGG-TCTCGAG-TAGATAAGGGTAATTTTTACAATCATCA  1089
      ||||| ||||||| ||| ||| ||||||| ||| | |||||| |||||||
seq2  CTGAG-TCAAGGGTTCTTGAGTTAGATAAAGGTTAATTTTAC-ATCATCA  1077

seq1  TTCTATG--GTAAAACA-CTTAT--GAGTCTTAGTATGTTAAACGTGAGA  1134
      ||| |||  || ||||| |||||  ||||||   ||||||  || |||||
seq2  TTC-ATGGTGTTAAACACCTTATTGGAGTCTGGATATGTT-CACATGAGA  1125

seq1  TATTTAGG  1142
      ||||||||
seq2  TATTTAGG  1133