BAC Information

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BAC

Clone NameB6Ng01-288D10
Chromosome13 (Build37)
Map Location 62,299,149 - 62,299,878
singlet/doubletsinglet
Overlap genenone
Upstream geneCts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594
Downstream geneLOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288D10.bB6Ng01-288D10.g
ACCGA085937GA085938
length1,1961,158
definitionB6Ng01-288D10.b B6Ng01-288D10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgctggcgagatactatctcaggacaagtggcgctgaaaaccc
gggaaaataccattgccaggcactgaaaggagaccctccgtttcacgggg
tgggtttagaactacgggacactacagctctgcaaggtatgtttggtctt
gaactttctccagcgttagaagcctttctgtttcttttcacgggggtcgt
tctttttcttttgattgcgtactgtttccaccggtggaactgctgactgg
tgctcagtcgcagtcaggcacggttagaaaaaggcaagaagacagtatgg
gggcttcccactctgtggtgaccaccttacggtcggtcctgaggcagtgt
ggcctgaaaatcgccaccaagacactagaaggctttgtaaaagaggtaga
tcgcatagcaccgtggtatgcgtgctcagggtccttaactatcccctctt
gggagaaattcaagggagatttagttagggaacaggagaacggcaaactt
aaagcagggaccatgccgttgtggaagctgataagatcgtgtttaaagga
tgaggaatgccaacaaatggctaaggtggggcagaggatcctggatgaaa
ttcaagacagtctatcagaggcagagcggggagagagattaggagttaaa
aggaaacatggtgcaccaattaagaaaacaggcctttccacggaccttga
gcccgaggaaaagagaattatgggaaagcatgcccagggtgagtttggaa
ggaaggatgggaaagaagagaggaagaaagatcgagctggggaggcccct
aggagagggagcctatacctgctgttagatgagttcaaggaactagctct
tagtagctcagaatcagatgagggacttagcccctctgaggaaacagact
tggaggaggaagcggctcgctatgagggagaaaggtaccagccagatgaa
aggagagctaatcagtcacaaaataagccaaaagcggctagcgaaagtca
gcttgctgctcagtctccgggccgtcggcctcagggtcttagttgccacc
tctgcctatgcggagagcccgccctgcacagagagcactacctcagactt
gtttattcccaaaagagaacgagaggaaatgccaccaagcgttcgtctga
aggcccgaggcggaaccgtttaaccctctccggggtgggaggtatt
gaattctttcaaaagcagatatctaaagaacatttcacattaagacaaaa
gaatatgcctgcttctaagcacctcacagaaaattctccaaaattaacct
tataattggagacaaaattctcaacagaataatctagaatgtctgagaaa
cacttaaagaaatgttgaaactccttacttattaggaaaatgcaaatcaa
aacaaccctgagatttctcctaaacaatcaaagtggctaatgtaaaaaac
tcaggtaagagcacctgctcccaagggtgtggagaaagggacccctccac
tcctggtgggattgtaaaactgaataaccactctgaaagtcaatctagcc
atcctcagaaaattggaagtagttgtacacacaaggtactcttgtccctt
gattgaataagaaaatgtgctctgggagactgaaagaatgtcttttcttt
tctttttttcttttttttttttaagatttatttattttatatatgtgagt
acactgtcttcagacacaccagaagagtgcatcagatcccattacaaatg
gctgtgagccaccatgtggttgctgggaattgaactcaggacctctggaa
gagcagttagtgctcttaactgatgagccatctctccagccccaagaatt
tctctctcttttttttttaaagatttatttattattatatgtaagtacac
tgtagctggttttaggcacaccggaggagggcatcagatctcattgtgag
tggttgtgagccatcatgtggtttatgggatttgaactcaggaccttcag
aagagcagtcagtgctcttaccctgtgagccatctctccagcccccaaga
atttcttgataactacaatttccggaactaaggccttgtgtggacctatt
atgggaagcggagagctgggcaggcctgtgctgtctgagtcatttgatct
cttctggtccagtaggagtgctgccacagtttttgaggcccagcagaatg
acactagattgggatgacttcttgggtagacgtagtcactagaagcacag
ttaaggaagtaccttggtgtcttccttctggatcaacctcttgattgtaa
gcacctatgaagctgttgaaggttgaacatagctgatgtccagctctctg
tccaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62299149_62299878
seq2: B6Ng01-288D10.g_68_1225

seq1  GAATTTTTTCAAAAACAGATATCTAAAGAACATTTCACATTCAGACAAAA  50
      ||||| |||||||| |||||||||||||||||||||||||| ||||||||
seq2  GAATTCTTTCAAAAGCAGATATCTAAAGAACATTTCACATTAAGACAAAA  50

seq1  GAATATGCCTGCTTCTCAGCACCTCACAGAAAATTCTCCAAAAT------  94
      |||||||||||||||| |||||||||||||||||||||||||||      
seq2  GAATATGCCTGCTTCTAAGCACCTCACAGAAAATTCTCCAAAATTAACCT  100

seq1  --TACTTGGAGTCAAAATTCTCAACAGAAGAATCTGGAATGTCTGAGAAA  142
        || |||||| ||||||||||||||||| ||||| ||||||||||||||
seq2  TATAATTGGAGACAAAATTCTCAACAGAATAATCTAGAATGTCTGAGAAA  150

seq1  CACTTAAAGAAATGTTGAAACTCCTTACTCATCAGGAAAATGGAAATCAA  192
      ||||||||||||||||||||||||||||| || ||||||||| |||||||
seq2  CACTTAAAGAAATGTTGAAACTCCTTACTTATTAGGAAAATGCAAATCAA  200

seq1  AACAACCCTGAGATTTTTTCCTAAACAATCAAAGTGGCTGAAGTCAAAAA  242
      ||||||||||||| ||| ||||||||||||||||||||| | || |||||
seq2  AACAACCCTGAGA-TTTCTCCTAAACAATCAAAGTGGCTAATGTAAAAAA  249

seq1  CTCAAGTAAGAGCACATGCTCCCAAGGGTGTGGAGAAAGGGACCCCTCCA  292
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCAGGTAAGAGCACCTGCTCCCAAGGGTGTGGAGAAAGGGACCCCTCCA  299

seq1  CTCCTGGTGGGATTGTAAAACTGAATAACCACTCTGAAAGTCAATCTAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTGGGATTGTAAAACTGAATAACCACTCTGAAAGTCAATCTAGC  349

seq1  CATCCTCAGAAAATTGGAAGTAGTTGTACACACAAGGTACTC-TGTCCCT  391
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCCTCAGAAAATTGGAAGTAGTTGTACACACAAGGTACTCTTGTCCCT  399

seq1  TGATTGAATAAGAAAATGTGCTCTGGGAGACTG-----------------  424
      |||||||||||||||||||||||||||||||||                 
seq2  TGATTGAATAAGAAAATGTGCTCTGGGAGACTGAAAGAATGTCTTTTCTT  449

seq1  --------------------------------------------------  424
                                                        
seq2  TTCTTTTTTTCTTTTTTTTTTTTAAGATTTATTTATTTTATATATGTGAG  499

seq1  --------------------------------------------------  424
                                                        
seq2  TACACTGTCTTCAGACACACCAGAAGAGTGCATCAGATCCCATTACAAAT  549

seq1  --------------------------------------------------  424
                                                        
seq2  GGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGA  599

seq1  --------------------------------------------------  424
                                                        
seq2  AGAGCAGTTAGTGCTCTTAACTGATGAGCCATCTCTCCAGCCCCAAGAAT  649

seq1  --------------------------------------------------  424
                                                        
seq2  TTCTCTCTCTTTTTTTTTTAAAGATTTATTTATTATTATATGTAAGTACA  699

seq1  --------------------------------------------------  424
                                                        
seq2  CTGTAGCTGGTTTTAGGCACACCGGAGGAGGGCATCAGATCTCATTGTGA  749

seq1  --------------------------------------------------  424
                                                        
seq2  GTGGTTGTGAGCCATCATGTGGTTTATGGGATTTGAACTCAGGACCTTCA  799

seq1  ----------------------------------------------CAAG  428
                                                    ||||
seq2  GAAGAGCAGTCAGTGCTCTTACCCTGTGAGCCATCTCTCCAGCCCCCAAG  849

seq1  AATTTCTTGATAACTACAAATTTCCCACACTCAGGCCCTGTGTGCCCCTG  478
      ||||||||||||||||| |||||||   ||| ||||| ||||||  ||| 
seq2  AATTTCTTGATAACTAC-AATTTCCGGAACTAAGGCCTTGTGTGGACCTA  898

seq1  TTGT-GGAAGCAGAGAGCTGGGCAGGCCTGTGCTGTCTGAGTCATTTGAT  527
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAAGCGGAGAGCTGGGCAGGCCTGTGCTGTCTGAGTCATTTGAT  948

seq1  CTCTTCTGGTCCAGTAGGAGTGCGGCCACAG-TTTTGAGGCCCAGCAGGA  576
      ||||||||||||||||||||||| ||||||| |||||||||||||||| |
seq2  CTCTTCTGGTCCAGTAGGAGTGCTGCCACAGTTTTTGAGGCCCAGCAGAA  998

seq1  TGACAGTAGATTGTGATGAACTC-TGGGTAGACGTAGTCATTAGGAGCAA  625
      ||||| ||||||| |||||  || |||||||||||||||| ||| ||| |
seq2  TGACACTAGATTGGGATGACTTCTTGGGTAGACGTAGTCACTAGAAGC-A  1047

seq1  CAGT--AGGAAGTACCTT-GTGTCTTCCTTCTGGGATTCAACTC-TGA-T  670
      ||||  |||||||||||| ||||||||||||| ||||  | ||| ||| |
seq2  CAGTTAAGGAAGTACCTTGGTGTCTTCCTTCT-GGATCAACCTCTTGATT  1096

seq1  GT-AGCA-CTAGGGAGCTGT--GAGGTAGACCGTAAGCTGAGTGTCACAG  716
      || |||| ||| | ||||||   |||| || | | |||||| |||| |||
seq2  GTAAGCACCTATGAAGCTGTTGAAGGTTGAACAT-AGCTGA-TGTC-CAG  1143

seq1  CTC-CTGTCCAGGAA  730
      ||| |||||||||||
seq2  CTCTCTGTCCAGGAA  1158