BAC Information

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BAC

Clone NameB6Ng01-288G24
Chromosome13 (Build37)
Map Location 84,075,861 - 84,152,027
singlet/doubletdoublet
Overlap geneLOC100043119, LOC667081
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik
Downstream geneLOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G24.bB6Ng01-288G24.g
ACCGA086100GA086101
length1,131805
definitionB6Ng01-288G24.b B6Ng01-288G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,075,861 - 84,076,805)(84,151,233 - 84,152,027)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgccgctag
tattgtaagagagatagtgaaagaaatcaggcattactatctactacata
gagttagaaatctcagggcaagcttagcaacgtaagtttagaattcttat
tatagttatgtatggcagactacattacttagtagaaactccccccacac
tatcacttagaataaaagccgagccactcacatatacaggaatttacaat
ggtttaggaagtagattgggctgtggttttaaagtattgcaatattcatg
agatggttacctagaactgaactccctaattagaaccaggacttgggtgt
gaaagcctttgccctgggagtgtaaagacctcacacctggcttctaagac
tatagctgaccttagatagagctgactttgtctcagttgttttattgccc
agttcctgccagtctttgtgtttacattcctctgttttgtgtaagagtca
ttaagcatccggtaacatcatttgtaccttgacgatgtgtcacctaactt
ccctatcttcttctgtataaaaagtatgacacttgatttgacaaattaca
ttcaaattcaacagactctctcattttgcatctgtttttcacctactgtc
gcagaatccttcacccacatgcaaccagagacccaaaaacggggttagtc
tgcgacagatatgaaaactaaaaggaccattcacaagtggttgtataagt
aggtatactacagatatgcaagttcatattgcattccttaatcttagaac
aatttctggtttaacggtattccccaattatttttttatgctgtgataaa
aataccattataaaaggtaccataaggagaaagagttgactttcatatac
agttccagaagaaagtccatagtgatgggggtgacatggtagcaggtggc
caaaacagggagatgagacatcttatcacaaccactcaaatagagcagag
agcaattggaaagtagggtgaggtacaaatctcaacacctcatccgtagt
gatacatttcctcaggaggttccatgtcctaaaggtccataccttctcca
aacagtggcctacaaaccaggacagggtgtc

gaattcatctctcccagctatgaatcacattcttctctgtccagcgcagt
gttcatccctgaaaccaaacatacacaaacaacaacacagacttgaaggt
tatatttatatatttctggacacaaacaaacaaatatacaatagtaataa
aaagaaatgaggttattaacttaagagttagggaacaagagggaggctgt
aaggagggtacttggagagagcattgggaggagtaagagaggtcactgtt
tcagttaaaaacatattgtttttaaaaaagaaaatgctgtaaatgaattt
ctgttaacctgttaacctgaaaataaatattaccccaggccttggagaag
agataaatggtggtgggtaggatatggaaaatgtatggtacagcaacact
taaccatgtcagtaaggtcaagaaagtatgccatggaaaagatacaatcc
taggggatgaaataaggcaaggacatacaggcttgggcctgccttgtgtt
aggatcataggtgtggaaacagacacagaaggtccttatcttcatagagc
tgaaagcctagcaaaaggacatggactatatatataaaatacatattata
tattataatatgattataatacaatggtataaacatttatgatagaagag
tatcctatgacgaaattttctagaaaatacataaaaatggtactttgccc
cagttgaaagggttcaggaaaagtttctaggacctaaaattataagcttt
caggatcaatatctgttcacagagagggtaaatggttggaaggaggttgt
tgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84075861_84076805
seq2: B6Ng01-288G24.b_234_1178

seq1  AACTCCCCCCACACTATCACTTAGAATAAAAGCCGAGCCACTCACATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCCCACACTATCACTTAGAATAAAAGCCGAGCCACTCACATATA  50

seq1  CAGGAATTTACAATGGTTTAGGAAGTAGATTGGGCTGTGGTTTTAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTACAATGGTTTAGGAAGTAGATTGGGCTGTGGTTTTAAAGTA  100

seq1  TTGCAATATTCATGAGATGGTTACCTAGAACTGAACTCCCTAATTAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATATTCATGAGATGGTTACCTAGAACTGAACTCCCTAATTAGAAC  150

seq1  CAGGACTTGGGTGTGAAAGCCTTTGCCCTGGGAGTGTAAAGACCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTGGGTGTGAAAGCCTTTGCCCTGGGAGTGTAAAGACCTCACAC  200

seq1  CTGGCTTCTAAGACTATAGCTGACCTTAGATAGAGCTGACTTTGTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTAAGACTATAGCTGACCTTAGATAGAGCTGACTTTGTCTCAG  250

seq1  TTGTTTTATTGCCCAGTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTGCCCAGTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTT  300

seq1  TTGTGTAAGAGTCATTAAGCATCCGGTAACATCATTTGTACCTTGACGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAGAGTCATTAAGCATCCGGTAACATCATTTGTACCTTGACGAT  350

seq1  GTGTCACCTAACTTCCCTATCTTCTTCTGTATAAAAAGTATGACACTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACCTAACTTCCCTATCTTCTTCTGTATAAAAAGTATGACACTTGA  400

seq1  TTTGACAAATTACATTCAAATTCAACAGACTCTCTCATTTTGCATCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAATTACATTCAAATTCAACAGACTCTCTCATTTTGCATCTGTT  450

seq1  TTTCACCTACTGTCGCAGAATCCTTCACCCACATGCAACCAGAGACCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTACTGTCGCAGAATCCTTCACCCACATGCAACCAGAGACCCAA  500

seq1  AAACGGGGTTAGTCTGCGACAGATATGAAAACTAAAAGGACCATTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGGGTTAGTCTGCGACAGATATGAAAACTAAAAGGACCATTCACAA  550

seq1  GTGGTTGTATAAGTAGGTATACTACAGATATGCAAGTTCATATTGCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTATAAGTAGGTATACTACAGATATGCAAGTTCATATTGCATTC  600

seq1  CTTAATCTTAGAACAATTTCTGGTTTAACGGTATTCCCCAATTATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTTAGAACAATTTCTGGTTTAACGGTATTCCCCAATTATTTTTT  650

seq1  TATGCTGTGATAAAAATACCATTATAAAAGGTACCATAAGGAGAAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTGATAAAAATACCATTATAAAAGGTACCATAAGGAGAAAGAGT  700

seq1  TGACTTTCATATACAGTTCCAGAAGAAAGTCCATAGTGATGGGGGTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCATATACAGTTCCAGAAGAAAGTCCATAGTGATGGGGGTGACA  750

seq1  TGGTAGCAGGTGGCCAAAACAGGGAGATGAGACATCTTATCACAACCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCAGGTGGCCAAAACAGGGAGATGAGACATCTTATCACAACCACT  800

seq1  CAAATAGAGCAGAGAGCAAATTGAAAGTAGGGTGAGGTACAAAATCTCAA  850
      ||||||||||||||||||| | |||||||||||||||||| |||||||||
seq2  CAAATAGAGCAGAGAGCAATTGGAAAGTAGGGTGAGGTAC-AAATCTCAA  849

seq1  CA-CTCATCCGTAGTGATACATTTCCTCAAGAAGGTTCCATGTCCTAAAA  899
      || ||||||||||||||||||||||||| || |||||||||||||| |||
seq2  CACCTCATCCGTAGTGATACATTTCCTC-AGGAGGTTCCATGTCCT-AAA  897

seq1  GTTCCATAACCTCTCCAAACAGTG--CTACAACCAGGGACAGGGTGTC  945
      | |||||| | |||||||||||||  |||||| |  ||||||||||||
seq2  GGTCCATACCTTCTCCAAACAGTGGCCTACAAACCAGGACAGGGTGTC  945


seq1: chr13_84151233_84152027
seq2: B6Ng01-288G24.g_65_869 (reverse)

seq1  CCCCAAC-ACCTCC-TCCAA-CATTTACCCTCTCTGTGAACTGATATTGA  47
      ||||||| |||||| ||||| |||||||||||||||||||| ||||||||
seq2  CCCCAACAACCTCCTTCCAACCATTTACCCTCTCTGTGAACAGATATTGA  50

seq1  TCCTG-AAGCTTATAA-TTTAGGTCCTAGAAACTTTTCCTG-ACCCTTTC  94
      ||||| |||||||||| |||||||||||||||||||||||| ||||||||
seq2  TCCTGAAAGCTTATAATTTTAGGTCCTAGAAACTTTTCCTGAACCCTTTC  100

seq1  AACTGGGGCAAAGTACCA-TTTTATGTATTTTCTAGAAAA-TTCGTCATA  142
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  AACTGGGGCAAAGTACCATTTTTATGTATTTTCTAGAAAATTTCGTCATA  150

seq1  -GATACTCTTCTATCATAAATGTTTATACCATTGTATTATAATCATATTA  191
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTCTTCTATCATAAATGTTTATACCATTGTATTATAATCATATTA  200

seq1  TAATATATAATATGTATTTTATATATATAGTCCATGTCC-TTTGCTAGGC  240
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATATATAATATGTATTTTATATATATAGTCCATGTCCTTTTGCTAGGC  250

seq1  TTTCAGCTCTATGAAGATAAGGACCTTCTGTGTCTGTTTCCACACCTATG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCTATGAAGATAAGGACCTTCTGTGTCTGTTTCCACACCTATG  300

seq1  ATCCTAACACAAGGCAGGCCCAAGCCTGTATGTCCTTGCCTTATTTCATC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAACACAAGGCAGGCCCAAGCCTGTATGTCCTTGCCTTATTTCATC  350

seq1  CCCTAGGATTGTATCTTTTCCATGGCATACTTTCTTGACCTTACTGACAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGATTGTATCTTTTCCATGGCATACTTTCTTGACCTTACTGACAT  400

seq1  GGTTAAGTGTTGCTGTACCATACATTTTCCATATCCTACCCACCACCATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTGTTGCTGTACCATACATTTTCCATATCCTACCCACCACCATT  450

seq1  TATCTCTTCTCCAAGGCCTGGGGTAATATTTATTTTCAGGTTAACAGGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCTCCAAGGCCTGGGGTAATATTTATTTTCAGGTTAACAGGTT  500

seq1  AACAGAAATTCATTTACAGCATTTTCTTTTTTAAAAACAATATGTTTTTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATTCATTTACAGCATTTTCTTTTTTAAAAACAATATGTTTTTA  550

seq1  ACTGAAACAGTGACCTCTCTTACTCCTCCCAATGCTCTCTCCAAGTACCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACAGTGACCTCTCTTACTCCTCCCAATGCTCTCTCCAAGTACCC  600

seq1  TCCTTACAGCCTCCCTCTTGTTCCCTAACTCTTAAGTTAATAACCTCATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAGCCTCCCTCTTGTTCCCTAACTCTTAAGTTAATAACCTCATT  650

seq1  TCTTTTTATTACTATTGTATATTTGTTTGTTTGTGTCCAGAAATATATAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTACTATTGTATATTTGTTTGTTTGTGTCCAGAAATATATAA  700

seq1  ATATAACCTTCAAGTCTGTGTTGTTGTTTGTGTATGTTTGGTTTCAGGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACCTTCAAGTCTGTGTTGTTGTTTGTGTATGTTTGGTTTCAGGGA  750

seq1  TGAACACTGCGCTGGACAGAGAAGAATGTGATTCATAGCTGGGAGAGATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTGCGCTGGACAGAGAAGAATGTGATTCATAGCTGGGAGAGATG  800

seq1  AATTC  795
      |||||
seq2  AATTC  805


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