BAC Information

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BAC

Clone NameB6Ng01-288M18
Chromosome10 (Build37)13 (Build37)
Map Location 9,201,438 - 9,201,60666,137,351 - 66,138,390
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUst, Sash1, LOC100039173, EG666625, LOC666636
Downstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110, 9130014G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288M18.bB6Ng01-288M18.g
ACCGA086368GA086369
length1,0051,162
definitionB6Ng01-288M18.b B6Ng01-288M18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,201,438 - 9,201,606)(66,137,351 - 66,138,390)
sequence
gaattctcagctccttctttagcatcatggctgccttcatgctgccatgc
ttcctgctataatggtaataaattaaatatttgaaactgtaagccaggcc
caattaaatatttacctttaaacatttccttggtcacaatttgtcttctg
agcattggaaattctttctaagactgaagttagtaccccagaattaagta
ttactatgataggcctggccatgtttttgtttggagcaatgtggaatttt
agactttggatttgtacatgtattaagttgaatttaattggacatgcaag
gagaaatgtggaacacataggtactggagagtgatttgaactctgtatat
gtttttataatgttttgcttaagaatgtttttgctttttgaccttgtctt
aagagtgatgcattgacaaagaagtaaaaggaaagccagcatagcctttg
tcctgtgtttactctcatgatgactgttttgatcaagcataatcttagaa
tggaaaaatgtagaatataaggttcaataagaaaaggctcgctgggtgtg
gtggtgcacacctttactcccagcactcgggaggcacaggcaagcagatt
tcttagttcaaggccagcctggtctacaaagtgagttcccggacagccag
ggctatacagataaaccctgtctcaaaaaaaaaagaaagaaagaaagaaa
gaaagaagaaagaaagaagaaagaagaagaaagaagaaagaaagaaagaa
agaagaaggaaagaagaagaaggaaggaaggaaggaaggagtagaaggag
aagaagaggaagaaggaagagaagaagaagactccacagatgttgatgac
ctaatctgtgatcaagatattacatggcattaaggaaagtgatgttatgc
aagatcatccagctaacctaatgattgcagttttgtaaggagactgtatc
aataggatgatgtactgttatctttcatgtgactacgaatataatatttt
caata

gaattccattcattttcctgactctctgaccatctcttgtctctcacaac
acctgttcctggccactcgcccttccccttacttatccactctcccatcc
agttctctctctttcttccatctgcctcctctgactgttttattcccctt
ttgaatgagattcaacaatgcttattagggcttttcttcttgtttagctt
ctttggttctatggaatatactgtggatatcctgtactttatggttaatg
ttcacttgtaagtgagtacatatattcatgtcattttgtttctgggttac
ctcactcaggatgatagtttctacctgtatccattggcctggaaaattca
tgatgtccttgcttttaatagcttattagtattccattttgtaaataaac
cacattttctgtatatgtatttcgggtgagggacatctggattgtttgca
gtttctagttgttacaaataaaataggatatgtctctatttgggcaagtt
ttcattggccattccctcagtctctgatccagctttgcctctgcatttct
ctttgacaggacaaatatgttctttgtgtctacagcgttgtggtttaaac
tgattcataattttcataattcaaaaatttagcaaaattttattaatgtt
acagtttaaactggtgtacctcatgtttctgcaattgaatacagaactgc
agttaatgtataattctttgtaggaacttcagtgcagaactatgggttct
ttcaatcatttttgtttccttgggtgacatttgcaggggagtgagggtct
ttcttctcatgcaacccatactttcaccatttgtttctctgtccctaaag
cacataagatacagtagacacatttgctattcaatgctaaactattttgc
aatcctggtggttttatatttttaaatttattattttggattttatttgt
ttgaagtaaatttctctgtgaaaacccttttttgtccctgttagtaggta
atagacaccacatccagacaccttatcaatgtttttttgtaccaattaag
catatgctttctgtgccatttcctttattcaccatctatcgatttttgaa
aattggaaccaaaatatattagcatatattcctggtttcccaggatgaca
tatagcctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9201438_9201606
seq2: B6Ng01-288M18.b_754_1051

seq1  GAAAGAAAAGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGAAG-  49
      ||||| |||||||||||| ||| ||| ||| ||| ||| |||||| ||| 
seq2  GAAAG-AAAGAAGAAAGA-AGA-AGAAAGA-AGAAAGAAAGAAAGAAAGA  46

seq1  -GAAGGAAAGAAG--GAAGGAAGGAAGGAAGGAAGG-GAGGAAGGAAGGA  95
       ||||||||||||  ||||||||||||||||||||| |  ||||||  ||
seq2  AGAAGGAAAGAAGAAGAAGGAAGGAAGGAAGGAAGGAGTAGAAGGA--GA  94

seq1  AGGA-AGGAAGGAAGAAAGA-AAGAAGTATA-TGAGAAGAGATAGATGAT  142
      || | ||||| |||| |||| |||||| | | |    |||  | ||||| 
seq2  AGAAGAGGAA-GAAGGAAGAGAAGAAGAAGACTCCACAGATGTTGATGAC  143

seq1  GTA------GATATAGATATAATATTTTCAATA-----------------  169
       ||      |||  |||||| | | |  || ||                 
seq2  CTAATCTGTGATCAAGATATTACA-TGGCATTAAGGAAAGTGATGTTATG  192

seq1  --------------------------------------------------  169
                                                        
seq2  CAAGATCATCCAGCTAACCTAATGATTGCAGTTTTGTAAGGAGACTGTAT  242

seq1  --------------------------------------------------  169
                                                        
seq2  CAATAGGATGATGTACTGTTATCTTTCATGTGACTACGAATATAATATTT  292

seq1  ------  169
            
seq2  TCAATA  298


seq1: chr13_66137351_66138390
seq2: B6Ng01-288M18.g_165_1232

seq1  CCATCCAGTTCTCTCTCTTTCTTCCATCTGCCTCCTCTGACTGTTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTTCTCTCTCTTTCTTCCATCTGCCTCCTCTGACTGTTTTATT  50

seq1  CCCCTTTTGAATGAGATTCAACAATGCTCATTAGGGCTTTTCTTCTTGTT  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTTTTGAATGAGATTCAACAATGCTTATTAGGGCTTTTCTTCTTGTT  100

seq1  TAGCTTCTTTGGTTCTATGGAATATAGTGTGGATATCCTGTACTTTATGG  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCTTCTTTGGTTCTATGGAATATACTGTGGATATCCTGTACTTTATGG  150

seq1  TTAATGTTCACTTGTAAGTGAGTACATATATTCATGTCATTTTGTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTCACTTGTAAGTGAGTACATATATTCATGTCATTTTGTTTCTG  200

seq1  GGTTACCTCATTCAGGATGATAGTTTCTACCTGTATCCATTGGCCTGGAA  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTCACTCAGGATGATAGTTTCTACCTGTATCCATTGGCCTGGAA  250

seq1  AATTCATGATGTCCTTGTTTTTAATAGCTTATTAGTATTCCATTTTGTAA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATTCATGATGTCCTTGCTTTTAATAGCTTATTAGTATTCCATTTTGTAA  300

seq1  ATAAACCACATTTTCTGTATACGTATTTCGGGTGAGGGACATCTGGATTG  350
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAAACCACATTTTCTGTATATGTATTTCGGGTGAGGGACATCTGGATTG  350

seq1  TTTGCAGTTTCTAGTTGTTACAAATAAAATAGGATATGTCTCTATTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTTCTAGTTGTTACAAATAAAATAGGATATGTCTCTATTTGGG  400

seq1  CAAGTTTTCATTGGCCATTCCCTCAGTCTCTGATCCAGCTTTGCCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTCATTGGCCATTCCCTCAGTCTCTGATCCAGCTTTGCCTCTGC  450

seq1  ATTTCTCTTTGACAGGACAAATATGTTCTTTGTGTCTACAGCGTTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTGACAGGACAAATATGTTCTTTGTGTCTACAGCGTTGTGGT  500

seq1  TTAAACTGATTCATAATTTTCATAATTCAAAAATTTAGCAAAATTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGATTCATAATTTTCATAATTCAAAAATTTAGCAAAATTTTATT  550

seq1  AATGTTACAGTTTAAACTGGTGTACCTCATGTTTCTGCAATTGAATACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACAGTTTAAACTGGTGTACCTCATGTTTCTGCAATTGAATACAG  600

seq1  AACTGCAGTTAATGTATAATTCTTTGTAGGAACTTCAGTGCAGAACTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGTTAATGTATAATTCTTTGTAGGAACTTCAGTGCAGAACTATG  650

seq1  GGTTCTTTCTATCATTTTTGTTTCCTTGGGTGACATTTGCAGGGGAGTGA  700
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCAATCATTTTTGTTTCCTTGGGTGACATTTGCAGGGGAGTGA  700

seq1  GGGTCTTTCTTCTCATGC-ACCCATACATTCACCATTTG-TTCTCTGTCC  748
      |||||||||||||||||| |||||||| ||||||||||| ||||||||||
seq2  GGGTCTTTCTTCTCATGCAACCCATACTTTCACCATTTGTTTCTCTGTCC  750

seq1  CTAAAGCACATAAGATACAGTAGACACATTTGCTATTCAATGCTAAACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCACATAAGATACAGTAGACACATTTGCTATTCAATGCTAAACTA  800

seq1  TTTTGCAAGCCTGGTGGTTTTATATTTTTAAATTTATTATTTTGGATTTT  848
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAATCCTGGTGGTTTTATATTTTTAAATTTATTATTTTGGATTTT  850

seq1  -GTTGTTTGAGGTAAAATTTCTCTGTGAAA--CCCTTTTTGT-CCTGTTA  894
        |||||||| || ||||||||||||||||  || ||||||| |||||||
seq2  ATTTGTTTGAAGT-AAATTTCTCTGTGAAAACCCTTTTTTGTCCCTGTTA  899

seq1  GTAGGT-ATAGACACCACAT-CAGACACC-TATCA---TGTTTTTGTAC-  937
      |||||| ||||||||||||| |||||||| |||||   | ||||||||| 
seq2  GTAGGTAATAGACACCACATCCAGACACCTTATCAATGTTTTTTTGTACC  949

seq1  -AATAAGCATATGC-TTCTGTGCAATT--CTTTATTCA-CATCT-TC-AA  980
       | ||||||||||| |||||||| |||  ||||||||| ||||| || | 
seq2  AATTAAGCATATGCTTTCTGTGCCATTTCCTTTATTCACCATCTATCGAT  999

seq1  TTTTGAAATTTG---ACAAAATATATAGG--TATATTC--TGTTTTCCAG  1023
      |||||||| |||    ||||||||||  |  |||||||   |||| ||||
seq2  TTTTGAAAATTGGAACCAAAATATATTAGCATATATTCCTGGTTTCCCAG  1049

seq1  GATGACATAT--GCTCATG  1040
      ||||||||||   ||||||
seq2  GATGACATATAGCCTCATG  1068


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