BAC Information

Click to search

BAC

Clone NameB6Ng01-288N18
Chromosome13 (Build37)
Map Location 102,987,321 - 102,988,510
singlet/doubletsinglet
Overlap genenone
Upstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
Downstream geneCd180, Mast4, EG621312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288N18.bB6Ng01-288N18.g
ACCGA086414GA086415
length1,2031,179
definitionB6Ng01-288N18.b B6Ng01-288N18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacatacatctaccaggtcagctcagtgatggagacactggta
tctgattcctgcagtcttccatgctggagcaagtcttggctcagaggcta
ccccctcatcaggaggagctgggactgtaacattccagcaaaagagaaca
acgttccatggcaggaaggtcttgctgagtccatccatgtttaatcattc
agaacagctattcatggatgactcttaaggcataaggcaaagctaaaaga
tttttttcactttgacactgaaacaaaaattgtgtttaaatctaatttta
acctcttgaattataatcagcttgtgtgagttatttcatattcaaggcct
acaggcttcaatttatttaggaaacagggtggcatttattgaacaaagac
cagatctttaaatagaattgtcccagaggatgtcaacaaaacaccaaaga
aattaattactgcataatgagaaccattattgaacacatctctgattcca
gatactattctaaatactttgtgtatgccatccaattcaatccaatagga
acatttgcaattgaggaaaattaagctcatctaaaggtaattatactagg
tttttgtcactgactgaaacctaacagaaacaaatttaaaggagaaaatg
ggttttcctcttatgcttgaaaagagatttcactcttccactgtgaagaa
atcatggcctcgggaacataggaaaaggctctctcacagggctgcaggca
ggatagagagagcacaggctggtaccttcaacaccccaccccatcccaac
ccaccacacacacacacacacacacacacacacacacacatatgcactta
ctatttcagccaaccccagcattctaaagaccccacaaccttcacaataa
ggtcaaagaagtctgtgtgggagttcaagattcaagccctactagtgatt
gatttgctccagggtcatgcatacaactgaaagtagcaagggccagaatc
tgaaacctaaaaataggattcctgagattatactgctaggtttttttaaa
aaaataaaagtgacaggttatagaaaaattagtttgggtattttcagatt
atcagctatttctatcaatacagatttcgacacgaatcttgtttttccta
agcaatacactgatcggtctcgaaatttaaagaacctgccgaaacacaat
ttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgcctgcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttatacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
aagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacatatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaa
aacagaaagtggatgctcacagtcagctaatggatgggatcatagggctc
ccaatggaggagctagagaaagtagccaagagctaaagggatctgcaacc
ctataggtggacacattatgactaaccagtaccccggagctctgactcct
agctgcatatatattccaaagatggccctagttcgcaatcaccttgaaga
agagccaattggtcttgcaacttaatggcccgagtacacgggtacgccag
gtccatataatgggaaagtgggcgtatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102987321_102988510
seq2: B6Ng01-288N18.b_49_1251

seq1  GAATTCATACATACATCTACCAGGTCAGCTCAGTGATGGAGACACTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACATACATCTACCAGGTCAGCTCAGTGATGGAGACACTGGTA  50

seq1  TCTGATTCCTGCAGTCTTCCATGCTGGAGCAAGTCTTGGCTCAGAGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCCTGCAGTCTTCCATGCTGGAGCAAGTCTTGGCTCAGAGGCTA  100

seq1  CCCCCTCATCAGGAGGAGCTGGGACTGTAACATTCCAGCAAAAGAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCATCAGGAGGAGCTGGGACTGTAACATTCCAGCAAAAGAGAACA  150

seq1  ACGTTCCATGGCAGGAAGGTCTTGCTGAGTCCATCCATGTTTAATCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCCATGGCAGGAAGGTCTTGCTGAGTCCATCCATGTTTAATCATTC  200

seq1  AGAACAGCTATTCATGGATGACTCTTAAGGCATAAGGCAAAGCTAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCTATTCATGGATGACTCTTAAGGCATAAGGCAAAGCTAAAAGA  250

seq1  TTTTTTTCACTTTGACACTGAAACAAAAATTGTGTTTAAATCTAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACTTTGACACTGAAACAAAAATTGTGTTTAAATCTAATTTTA  300

seq1  ACCTCTTGAATTATAATCAGCTTGTGTGAGTTATTTCATATTCAAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGAATTATAATCAGCTTGTGTGAGTTATTTCATATTCAAGGCCT  350

seq1  ACAGGCTTCAATTTATTTAGGAAACAGGGTGGCATTTATTGAACAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTCAATTTATTTAGGAAACAGGGTGGCATTTATTGAACAAAGAC  400

seq1  CAGATCTTTAAATAGAATTGTCCCAGAGGATGTCAACAAAACACCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTTAAATAGAATTGTCCCAGAGGATGTCAACAAAACACCAAAGA  450

seq1  AATTAATTACTGCATAATGAGAACCATTATTGAACACATCTCTGATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTACTGCATAATGAGAACCATTATTGAACACATCTCTGATTCCA  500

seq1  GATACTATTCTAAATACTTTGTGTATGCCATCCAATTCAATCCAATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATTCTAAATACTTTGTGTATGCCATCCAATTCAATCCAATAGGA  550

seq1  ACATTTGCAATTGAGGAAAATTAAGCTCATCTAAAGGTAATTATACTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCAATTGAGGAAAATTAAGCTCATCTAAAGGTAATTATACTAGG  600

seq1  TTTTTGTCACTGACTGAAACCTAACAGAAACAAATTTAAAGGAGAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCACTGACTGAAACCTAACAGAAACAAATTTAAAGGAGAAAATG  650

seq1  GGTTTTCCTCTTATGCTTGAAAAGAGATTTCACTCTTCCACTGTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCCTCTTATGCTTGAAAAGAGATTTCACTCTTCCACTGTGAAGAA  700

seq1  ATCATGGCCTCGGGAACATAGGAAAAGGCTCTCTCACAGGGCTGCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCCTCGGGAACATAGGAAAAGGCTCTCTCACAGGGCTGCAGGCA  750

seq1  GGATAGAGAGAGCACAGGCTGGTACCTTCAACACCCCACCCCATCCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGAGAGCACAGGCTGGTACCTTCAACACCCCACCCCATCCCAAC  800

seq1  CCACCACACACACACACACACACACACACACACACACACATATGCACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACACACACACACACACACACACACACACACACATATGCACTTA  850

seq1  CTATTTCAGCCAACCCCAGCATTCTAAAGACCCCACAACCTTCACAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGCCAACCCCAGCATTCTAAAGACCCCACAACCTTCACAATAA  900

seq1  GGTCAAAGAAGTCTGTGTGGGAGTTCAAGATTCAAGCCCTACTAGTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGAAGTCTGTGTGGGAGTTCAAGATTCAAGCCCTACTAGTGATT  950

seq1  GATTTGCT-CAAGGTCATGCATACAACTGAAAGTAGCAA-GGCCAGAATC  998
      |||||||| || ||||||||||||||||||||||||||| ||||||||||
seq2  GATTTGCTCCAGGGTCATGCATACAACTGAAAGTAGCAAGGGCCAGAATC  1000

seq1  TGAAACCTAAAAATAGGATTCCTGAGATTATAATGCTAGGTTTTTTT-AA  1047
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TGAAACCTAAAAATAGGATTCCTGAGATTATACTGCTAGGTTTTTTTAAA  1050

seq1  AAAATAAAAGTGACAGGTTATAGAAAAA-TAG-TTGGTTATTTTCAGATT  1095
      |||||||||||||||||||||||||||| ||| |||| ||||||||||||
seq2  AAAATAAAAGTGACAGGTTATAGAAAAATTAGTTTGGGTATTTTCAGATT  1100

seq1  ATCAGCTA-TTCTATCAATACAGATTTCGACACG-ATCTTGTTT---CTA  1140
      |||||||| ||||||||||||||||||||||||| |||||||||   |||
seq2  ATCAGCTATTTCTATCAATACAGATTTCGACACGAATCTTGTTTTTCCTA  1150

seq1  AGGCAATACACTGATC-GTCTCAGAATATAAAAGAACTG-CGAA--ACAA  1186
      | |||||||||||||| |||||  ||| ||||  | ||| ||||  ||||
seq2  A-GCAATACACTGATCGGTCTCGAAATTTAAAGAACCTGCCGAAACACAA  1199

seq1  TTTT  1190
      ||||
seq2  TTTT  1203