BAC Information

Click to search

BAC

Clone NameB6Ng01-288O05
Chromosome13 (Build37)
Map Location 111,903,458 - 111,904,508
singlet/doubletsinglet
Overlap genenone
Upstream geneRab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288O05.bB6Ng01-288O05.g
ACCGA086436GA086437
length1,0331,057
definitionB6Ng01-288O05.b B6Ng01-288O05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttcgtatccagctgcattgctgaaagtatttatcagttataa
gagtttctcagtgaaaattttagagtcacttataaataccatcatactgt
ctgcaaacaatgatgctttgactttttcctttccagtttgtagccccttg
atttcctttgcatgtcttactgctctagctaagacttccagtaatgtatt
gaataggtatggagaaagtagacaaccttgtcttgttcctgattttagtg
agattgctttgtgtttctcttcatttaagttgatgttggctatagtttta
aaatgcagggtgttatttctattttactgtgctcattggaacttccttta
tattcaagtatgtgctcagttttgtagaatttctctgaaatgttgagaag
aaggtatgttcttttgtgtttgaatgaattgttctgtacctgtttggtcc
atttggtttataacatctgatagctccagctgtttctcagtttagttgtt
gtctggaagacctacctagtgatgagagtgaagtattgaaacctcccact
atcagtgtgtgagatgcaataagtaattcaagctgttttgatatttcttt
tatgaacttgggttcccttgtatttggtgaataaatggtaagaattacaa
tgtcctcctggtggacattgttaggtatgtggtgtccttccctatagctt
ataattagttttggtttgaagtctattttatcagatactaaactggttac
actagattgcttcttaggttcatctgtttgaaacatcttttaccattctt
ttattctaaagtgatgtctatctttgatgttaaagtgtgttttgggatgc
agcagaaggatgaattctgtttttgtttccgtctcttagtttgtattttt
tttttttattgaggaattgaaaaccattgatgctgagatatatccaatga
atagttccttggttggtcctgttattttttttgttccttgttgtccttgc
gttgttgttgtgggggggggggggagggagttt
gaattccctgtgaagatccagtattgatggtgtagcagaagccagaggct
tcaaaccagaccattgacttgttgcaatgaacatttgcaaataaaggtgt
gtggatggagggtatacacgaagcttccatgatgagatggtttctatgtt
ttgttgcagtttatttttgtttgtttttcattttccttgggggattccta
gggcagaaggcagatatgaagggacagagagattagtgggactgggtttt
atgatataaaactcacaaagaatcaataaaaagttgaaaataccctggtg
gcatttagatttcagcattccaacaagtcaatcaaaaataactttctagt
gtcatttaagtgattggctatctccaaacagaagacttcttttcccctgg
ctgttatgtgatacgttggaatggaacctcatacctggacataccacacc
aggctaaagcagttccacatggcagaggtttattggagacaaagagggga
aagagagaaaacaaagggaaaggggtgtgaaagtggggaagggtctgtct
tttatttaggctgtgacataacctgtttgcagctaagtgtgggaagtgga
ctctagaaagatatgtggttgtcatggcaacaggtgtcatctgtgtgtga
cattcctgagttttggagcccatctgccaaactggttcttgataccaaca
ttatgtaccttgagtcagttattatagctttctgaatgtgaaaattagaa
ctggagatcgccaaattgctttgttgttataatttgataaatcgagccaa
ctacatgatcattgaaaggcaggacattaaagattatttttgttaagtgg
cctatcaatcaaatctaaagataatatgaacttagtttcaatcttcaggc
cacctataatgagagacgaagccagagatgtacaatagatgtttgccagt
catcacccttcccaaggcatattagtctaatgattttgtaattaaaaaat
tctgtaaccacactatttgactaaataattggcgttttttgtatccaatg
gcagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111903458_111904508
seq2: B6Ng01-288O05.g_69_1125 (reverse)

seq1  GTTCTGCCATTGTATACAAAAA---CACAATAATTAGTCAAATAGTGTGT  47
      |||||||||||| |||||||||   |  | || |||||||||||||||| 
seq2  GTTCTGCCATTGGATACAAAAAACGCCAATTATTTAGTCAAATAGTGTGG  50

seq1  TCCAAGAAATTTTTAAATACAAAATCA-TAGACTAATATGCCTAGGG-AG  95
      |   |||| ||||||| |||||||||| ||||||||||||||| ||| ||
seq2  TTACAGAATTTTTTAATTACAAAATCATTAGACTAATATGCCTTGGGAAG  100

seq1  GGTGATGACTGGCAAACATCTATTGTACATCTCTGGCTTCGTCTCTCCTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTGATGACTGGCAAACATCTATTGTACATCTCTGGCTTCGTCTCTCATT  150

seq1  ATAGGTGGCCTGAAGATTGAAACTAAGTTCATATTATCTTTAGATTTGAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGGCCTGAAGATTGAAACTAAGTTCATATTATCTTTAGATTTGAT  200

seq1  TGATAGGCCACTTAAC-AAAATAATCTTTAATGTCCTGCCTTTCAATGAT  244
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATAGGCCACTTAACAAAAATAATCTTTAATGTCCTGCCTTTCAATGAT  250

seq1  CATGTAGTTGGCTCGATTTATCAAATTATAACAACAAAGCAATTTGGCGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTTGGCTCGATTTATCAAATTATAACAACAAAGCAATTTGGCGA  300

seq1  TTCTCCAGTTCTAATTTTCACATTCAGAAAGCTATAATAACTGACTCAAG  344
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTCCAGTTCTAATTTTCACATTCAGAAAGCTATAATAACTGACTCAAG  349

seq1  GTACATAATGTTGGTATCAAGAACCAGTTTGGCAGATGGGCTCC-AAACT  393
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTACATAATGTTGGTATCAAGAACCAGTTTGGCAGATGGGCTCCAAAACT  399

seq1  CAGGAATGTCACACACAGATGACACCTGTTGCCATGACAACCACATATCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGTCACACACAGATGACACCTGTTGCCATGACAACCACATATCT  449

seq1  TTCTAGAGTCCACTTCCCACACTTAGCTGCAAACAGGTTATGTCACAGCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTCCACTTCCCACACTTAGCTGCAAACAGGTTATGTCACAGCC  499

seq1  TAAATAAAAGACAGACCCTTCCCCACTTTCACACCCCTTTCCCTTTGTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGACAGACCCTTCCCCACTTTCACACCCCTTTCCCTTTGTTT  549

seq1  TCTCTCTTTCCCCTCTTTGTCTCCAATAAACCTCTGCCATGTGGAACTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCCCCTCTTTGTCTCCAATAAACCTCTGCCATGTGGAACTGC  599

seq1  TTTAGCCTGGTGTGGTATGTCCAGGTATGAGGTTCCATTCCAACGTATCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTGGTGTGGTATGTCCAGGTATGAGGTTCCATTCCAACGTATCA  649

seq1  CATAACAGCCAGGGGAAAAGAAGTCTTCTGTTTGGAGATAGCCAATCACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGCCAGGGGAAAAGAAGTCTTCTGTTTGGAGATAGCCAATCACT  699

seq1  TAAATGACACTAGAAAGTTATTTTTGATTGACTTGTTGGAATGCTGAAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACACTAGAAAGTTATTTTTGATTGACTTGTTGGAATGCTGAAAT  749

seq1  CTAAATGCCACCAGGGTATTTTCAACTTTTTATTGATTCTTTGTGAGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCCACCAGGGTATTTTCAACTTTTTATTGATTCTTTGTGAGTTT  799

seq1  TATATCATAAAACCCAGTCCCACTAATCTCTCTGTCCCTTCATATCTGCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATAAAACCCAGTCCCACTAATCTCTCTGTCCCTTCATATCTGCC  849

seq1  TTCTGCCCTAGGAATCCCCCAAGGAAAATGAAAAACAAACAAAAATAAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCTAGGAATCCCCCAAGGAAAATGAAAAACAAACAAAAATAAAC  899

seq1  TGCAACAAAACATAGAAACCATCTCATCATGGAAGCTTCGTGTATACCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAAACATAGAAACCATCTCATCATGGAAGCTTCGTGTATACCCT  949

seq1  CCATCCACACACCTTTATTTGCAAATGTTCATTGCAACAAGTCAATGGTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACACACCTTTATTTGCAAATGTTCATTGCAACAAGTCAATGGTC  999

seq1  TGGTTTGAAGCCTCTGGCTTCTGCTACACCATCAATACTGGATCTTCACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAAGCCTCTGGCTTCTGCTACACCATCAATACTGGATCTTCACA  1049

seq1  GGGAATTC  1051
      ||||||||
seq2  GGGAATTC  1057