BAC Information

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BAC

Clone NameB6Ng01-289H04
Chromosome13 (Build37)
Map Location 117,979,667 - 118,158,672
singlet/doubletdoublet
Overlap geneEmb, EG623365
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
Downstream geneLOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289H04.bB6Ng01-289H04.g
ACCGA086844GA086845
length9871,199
definitionB6Ng01-289H04.b B6Ng01-289H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,158,041 - 118,158,672)(117,979,667 - 117,980,853)
sequence
gaattccaggaccaccagggttatacagagaaaccctgtctcaaacaaac
aagaagtgcccaaagtaaaacgaagagtcgtatagccattattgtatttt
aaaatggtataaaatgtttacattaagactatatcaaagtgtggagcaga
tactgaaggaaaacccatccagagactgccccatctgggaattcatccca
tatacagacaccaaatccagacactattgtggatgccaagatgtgtttgc
tgacaggagcctggtatagatcctgagaggctgacaaatacagctgcaga
ttatcacagccatccattggactgagtacagggaccccaatgaaggagat
agagaaaggactgaagaagctgaagcggtttacaacccataggaagaaca
acaatatcaaccaaccagaacccccagagttcctaggaaccaaaccacca
accagagtacacatgcagggactcatggctccagaaacatatgtagtaga
gaatggccttgactggcatcaatggaaggagaggcttgttgctgcagtgt
aggggaatgccaggccggtgatgcaggagtgggtgggtgggtaagtgagc
cccctcatagaagcaagagggagggaggacaggataggggggttctggag
ggaaaaccaggaaaggggataatatttgaaatgtaaataaagaaaatatc
caataaaataaaataaaagactatatcaagtgtcatgagtgtactgcaac
tggaatactcatctactgcaaagtggaatgcaagaaaggcaagcccttct
caaaaatagctcggtagcttcttggaaagtaaaatatatttaccatgtga
ttcaacagtttcagtctttgggtattcacatgtttacaaaaagcctttgt
ttctacaggtaaccctctgtaccagcatgatatctagagaaacagagcca
atagaattagcacatcttaatacaaaggcaatttttt
gaattccagaccagcctgggctacgccacaatagcttgtctcaaagcact
cgtgcacacacacacacacacacacacacacacacacacacacacagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagaaacatacgttaatttcagtacttctgtaagttaaattctctagtat
tagcactgcatactattttgagcaaaattctttccaatgacttttttttt
ttcatccttagaatagtagtagtgcactggctggttttgtgtgtcaactt
gacacagctggagttatcacagagaaaggagcttcagttggggaagtgct
ccataagatccagctgtggggcattttctcaattagtgatcaaggaggga
gggccccttgtgggtggcaccatctctgggctggtagtcttgggttctat
aagagagcaggctgagcaagccagggaagcaagccagtaaggaacatccc
tccacggcctctgcatcagctcctgcttcctgacctgcttgagttccagt
cctgacttcctttggtgatgaacagcaacacggaagtgtaagccaaataa
accctttcctccccaacttgtttcttggtgatgatgtttgtgcaggaata
gaaaccctaagacaagtagcaaataaaaaaggtactgtaaacccaatgaa
agactacaagttaatggtaaaaacttgaaactgagttatttcctgcggag
ttccctgtgatttctgaacaagggacctatgttatggtttggatcttaga
taaaatgggacatgtgctgctggattgctctctatcctatagccggcttt
gaaaggtggtaggccttagagctgggcgctcagtgaaaggaagctggctt
agcaaaggcttgcacaagagaaaggatactatgcccaacaactgcttcct
atctttttttctatttgcctcccaagccttctgtgaaatgaacagtcccc
ttttgccttgaaaccatctcatcagctctggttaaagtcttttcttaaaa
aacggtttaataattttactagttaaacagaagtatcatcaatctcacat
taatcctataacctggaattttatgagctgctccatccattcaatggagt
ttttaaaattttaacactgcagaggtgttctaatgagagaatatcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118158041_118158672
seq2: B6Ng01-289H04.b_45_676 (reverse)

seq1  CTGTCCTCCCTCCCTCTTGCTTCTATGAGGGGGCTCACTTACCCACCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCCCTCCCTCTTGCTTCTATGAGGGGGCTCACTTACCCACCCAC  50

seq1  CCACTCCTGCATCACCGGCCTGGCATTCCCCTACACTGCAGCAACAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTGCATCACCGGCCTGGCATTCCCCTACACTGCAGCAACAAGCC  100

seq1  TCTCCTTCCATTGATGCCAGTCAAGGCCATTCTCTACTACATATGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCATTGATGCCAGTCAAGGCCATTCTCTACTACATATGTTTCT  150

seq1  GGAGCCATGAGTCCCTGCATGTGTACTCTGGTTGGTGGTTTGGTTCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGAGTCCCTGCATGTGTACTCTGGTTGGTGGTTTGGTTCCTAG  200

seq1  GAACTCTGGGGGTTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGGGGTTCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGTTG  250

seq1  TAAACCGCTTCAGCTTCTTCAGTCCTTTCTCTATCTCCTTCATTGGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGCTTCAGCTTCTTCAGTCCTTTCTCTATCTCCTTCATTGGGGTC  300

seq1  CCTGTACTCAGTCCAATGGATGGCTGTGATAATCTGCAGCTGTATTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTCAGTCCAATGGATGGCTGTGATAATCTGCAGCTGTATTTGTC  350

seq1  AGCCTCTCAGGATCTATACCAGGCTCCTGTCAGCAAACACATCTTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCAGGATCTATACCAGGCTCCTGTCAGCAAACACATCTTGGCAT  400

seq1  CCACAATAGTGTCTGGATTTGGTGTCTGTATATGGGATGAATTCCCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATAGTGTCTGGATTTGGTGTCTGTATATGGGATGAATTCCCAGAT  450

seq1  GGGGCAGTCTCTGGATGGGTTTTCCTTCAGTATCTGCTCCACACTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGTCTCTGGATGGGTTTTCCTTCAGTATCTGCTCCACACTTTGAT  500

seq1  ATAGTCTTAATGTAAACATTTTATACCATTTTAAAATACAATAATGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTAATGTAAACATTTTATACCATTTTAAAATACAATAATGGCTA  550

seq1  TACGACTCTTCGTTTTACTTTGGGCACTTCTTGTTTGTTTGAGACAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACTCTTCGTTTTACTTTGGGCACTTCTTGTTTGTTTGAGACAGGGT  600

seq1  TTCTCTGTATAACCCTGGTGGTCCTGGAATTC  632
      ||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAACCCTGGTGGTCCTGGAATTC  632

seq1: chr13_117979667_117980853
seq2: B6Ng01-289H04.g_65_1263

seq1  GAATTCCAGACCAGCCTGGGCTACGCCACAATAGCTTGTCTCAAAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGCCTGGGCTACGCCACAATAGCTTGTCTCAAAGCACT  50

seq1  CGTGCACACACACACACACACACACACACACACACACACACACACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACACACACACACACACACACACACACACACACACACACACAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAGAAACATACGTTAATTTCAGTACTTCTGTAAGTTAAATTCTCTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACATACGTTAATTTCAGTACTTCTGTAAGTTAAATTCTCTAGTAT  200

seq1  TAGCACTGCATACTATTTTGAGCAAAATTCTTTCCAATGACTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGCATACTATTTTGAGCAAAATTCTTTCCAATGACTTTTTTTTT  250

seq1  TTCATCCTTAGAATAGTAGTAGTGCACTGGCTGGTTTTGTGTGTCAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTAGAATAGTAGTAGTGCACTGGCTGGTTTTGTGTGTCAACTT  300

seq1  GACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCT  350

seq1  CCATAAGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGAGGGA  400

seq1  GGGCCCCTTGTGGGTGGCACCATCTCTGGGCTGGTAGTCTTGGGTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCTTGTGGGTGGCACCATCTCTGGGCTGGTAGTCTTGGGTTCTAT  450

seq1  AAGAGAGCAGGCTGAGCAAGCCAGGGAAGCAAGCCAGTAAGGAACATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAGGCTGAGCAAGCCAGGGAAGCAAGCCAGTAAGGAACATCCC  500

seq1  TCCACGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGT  550

seq1  CCTGACTTCCTTTGGTGATGAACAGCAACACGGAAGTGTAAGCCAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTCCTTTGGTGATGAACAGCAACACGGAAGTGTAAGCCAAATAA  600

seq1  ACCCTTTCCTCCCCAACTTGTTTCTTGGTGATGATGTTTGTGCAGGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCTCCCCAACTTGTTTCTTGGTGATGATGTTTGTGCAGGAATA  650

seq1  GAAACCCTAAGACAAGTAGCAAATAAAAAAGGTACTGTAAACCCAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTAAGACAAGTAGCAAATAAAAAAGGTACTGTAAACCCAATGAA  700

seq1  AGACTACAAGTTAATGGTAAAAACTTGAAACTGAGTTATTTCCTGCGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAAGTTAATGGTAAAAACTTGAAACTGAGTTATTTCCTGCGGAG  750

seq1  TTCCCTGTGATTTCTGAACAAGGGACCTATGTTATGGTTTGGATCTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTGATTTCTGAACAAGGGACCTATGTTATGGTTTGGATCTTAGA  800

seq1  TAAAAT-GGACATGTGCTGCTGGATTGCTCTCTATCCTATAG-CGGCTTT  848
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAAATGGGACATGTGCTGCTGGATTGCTCTCTATCCTATAGCCGGCTTT  850

seq1  GAAAGGTGGTAGGCCTTAGGAGCTGGGCGC-CAGTGAAAGGAAGCTGGCT  897
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GAAAGGTGGTAGGCCTTA-GAGCTGGGCGCTCAGTGAAAGGAAGCTGGCT  899

seq1  TAGCAAAGGCTTGCAC-AGAG-AAGGATACTATGCCCAAC-ACTGCTTCC  944
      |||||||||||||||| |||| |||||||||||||||||| |||||||||
seq2  TAGCAAAGGCTTGCACAAGAGAAAGGATACTATGCCCAACAACTGCTTCC  949

seq1  TATCTTTTTTTCTATTTGCCTCCCAAGCC-TCTGTGAAATGAACAGTCCC  993
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATCTTTTTTTCTATTTGCCTCCCAAGCCTTCTGTGAAATGAACAGTCCC  999

seq1  CTTTGCCCTTGAAACCATCTCATCAGCTCT-GTTAAAGTCTTTTCTTTAA  1042
      ||||  |||||||||||||||||||||||| |||||||||||||| ||||
seq2  CTTTTGCCTTGAAACCATCTCATCAGCTCTGGTTAAAGTCTTTTC-TTAA  1048

seq1  AAAACGGGTTAATA--TTTACTAGTTTAAACAGAAGTATCAAC-ATCT-A  1088
      ||||||| ||||||  |||||||| |||||||||||||||| | |||| |
seq2  AAAACGGTTTAATAATTTTACTAG-TTAAACAGAAGTATCATCAATCTCA  1097

seq1  CATT-ATCTTATAA-CTGGATATTTAATTAAACTGCTCCATCCATTCTAA  1136
      |||| ||| ||||| |||||  ||||  | | ||||||||||||||| ||
seq2  CATTAATCCTATAACCTGGAATTTTA--TGAGCTGCTCCATCCATTC-AA  1144

seq1  TGGATGTTTTAAAAATTATA--ACTGCAG-GATGTTCTATAGAGAGA--A  1181
      |||| ||||| |||||| ||  ||||||| | |||||||  ||||||  |
seq2  TGGA-GTTTTTAAAATTTTAACACTGCAGAGGTGTTCTAATGAGAGAATA  1193

seq1  TCCTAT  1187
      ||||||
seq2  TCCTAT  1199