BAC Information

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BAC

Clone NameB6Ng01-289J07
Chromosome13 (Build37)
Map Location 81,540,294 - 81,697,988
singlet/doubletdoublet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289J07.bB6Ng01-289J07.g
ACCGA086938GA086939
length1,1021,114
definitionB6Ng01-289J07.b B6Ng01-289J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,540,294 - 81,541,401)(81,696,868 - 81,697,988)
sequence
gaattcttgccagtattaggtattgtcactgattttatgacagccattct
ggaagattcagataaaaatctctgtggcacactgaacatcttatacagat
atgtcctctagtgcaatgtcttcatgtaccactctggttttgcttactgt
attcttccttccatgatcataaacccattcttcttatcactgcatttgac
agacaggatattctgtcatggtgttctttcactgtgagcatattgatatg
aaagtattacttttctaatgccttaatttctttttcattgtggagggatg
ttttttctacaggtgaaataacatttctaccatttgaaatctacaattta
tagttgggctccaacacttcacttcagtattttcttctcatttttatagt
ttgattattatatactgttactgttaatatcatcagcctcacaggagcta
gagccactgaagagtcaggcctgagaagacctatacgggatcacttagat
tatgttagcagaggttaactcaccctgagtgtacacagtgacaatctagg
ctctgaaatctggattaaatgaaagtagaaagctgggtgtgcatctgact
catctctctctgcttcctgaccatggacacagtgtgagactgcctgtgtg
catctgactcatctctctctgcttcctgaccatggacacagtgtgagact
gcctgaacctcctttgcttcattgctgtgatggaccacacccttaaactg
ccagccaacacaaccctctccctcctgaagtagcctttgtctggtgttct
gtcacaacaagatgattacagcacctcaatgaaggattttctttttctta
tttattttgcctgtggattttttttttttagtttcttcaacatatattct
aataacctttatgaaattgaaaacatttccatctctattcttcaaatgtt
ttttttttcaatccctatctctttcttctttctttcaggactctagagtc
ataatgttaatttttgctgttgcagctttgtaggtccctaagcatgcttc
attaagttttctcaatctctctgctgcgtgttcaacagagacactgtcat
tc

gaattctatctggacggaaaggcaatgcccagaggcataaagagtctgaa
aggagaagctattactgatggtgagttgtctgcattgtgactagctcact
gaataggaaagagtctcaactctttaattaaaaagtttgaattttttgaa
agaaagagctagcaaatattttggaacttgactttatgttttctctagta
aatctgtgtgcctaccaagaccaaaacagtgttaagttgagtgtttcaga
tacactcaactggggaaatcagaaacaggctctaagttaaggctgtgcaa
gcaaatcactacagaactttgtgggaagaaaagaaacgagaggaatcttg
tttgtctctagttagtgatcaggaaggaactgtttttgcacaggaatgag
caaaggtctggaactgtgaaacagctcattatatctgggaaactctttct
ccttcagtgtgtctggaggtgaagggttatggaaaaaaagacagaagagc
cattgagagaaaatattaactaaaaataattacaggtactgtgtcatcag
caggtgaaccaatgagttccgtgccttgctttgaagggataatctttgtt
ggcttttagtcaaatcacacaccctctcttaggataactcactgtggact
gtgtatacttaggagtctgaagcaggagaatcatgagcaaagccaacctg
ggctctttagcaagttgttggccagaagcaataatgagatcctgtcataa
atcaccaaaaaccaaactaaaaaacaaagcaactgaactatatattgaca
aaatcctaaaaaggactatggaggtgtagtgatttatagctggactgtct
actgttactgtcttgaaagtgctgcatgcttgaatgtagtgtttctaaga
actactggtttctatgttcagttaggtttgtacaaaatgatatatttggc
cctgtagaaaccaccactccttagaatcaccactttagttaacttgagat
gatttttacacatagagctttcaggttctcttatagtattcagtagtttc
aaattggaacagaccaatccttgcatatgtagttcagtaggtagtataac
caggaaatatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81540294_81541401
seq2: B6Ng01-289J07.b_47_1148

seq1  GAATTCTTGCCAGTATTAGGTATTGTCACTGATTTTATGACAGCCATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCAGTATTAGGTATTGTCACTGATTTTATGACAGCCATTCT  50

seq1  GGAAGATTCAGATAAAAATCTCTGTGGCACACTGAACATCTTATACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTCAGATAAAAATCTCTGTGGCACACTGAACATCTTATACAGAT  100

seq1  ATGTCCTCTAGTGCAATGTCTTCATGTACCACTCTGGTTTTGCTTACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTAGTGCAATGTCTTCATGTACCACTCTGGTTTTGCTTACTGT  150

seq1  ATTCTTCCTTCCATGATCATAAACCCATTCTTCTTATCACTGCATTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTTCCATGATCATAAACCCATTCTTCTTATCACTGCATTTGAC  200

seq1  AGACAGGATATTCTGTCATGGTGTTCTTTCACTGTGAGCATATTGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATATTCTGTCATGGTGTTCTTTCACTGTGAGCATATTGATATG  250

seq1  AAAGTATTACTTTTCTAATGCCTTAATTTCTTTTTCATTGTGGAGGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTACTTTTCTAATGCCTTAATTTCTTTTTCATTGTGGAGGGATG  300

seq1  TTTTTTCTACAGGTGAAATAACATTTCTACCATTTGAAATCTACAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTACAGGTGAAATAACATTTCTACCATTTGAAATCTACAATTTA  350

seq1  TAGTTGGGCTCCAACACTTCACTTCAGTATTTTCTTCTCATTTTTATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGGCTCCAACACTTCACTTCAGTATTTTCTTCTCATTTTTATAGT  400

seq1  TTGATTATTATATACTGTTACTGTTAATATCATCAGCCTCACAGGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATTATATACTGTTACTGTTAATATCATCAGCCTCACAGGAGCTA  450

seq1  GAGCCACTGAAGAGTCAGGCCTGAGAAGACCTATACGGGATCACTTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTGAAGAGTCAGGCCTGAGAAGACCTATACGGGATCACTTAGAT  500

seq1  TATGTTAGCAGAGGTTAACTCACCCTGAGTGTACACAGTGACAATCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGCAGAGGTTAACTCACCCTGAGTGTACACAGTGACAATCTAGG  550

seq1  CTCTGAAATCTGGATTAAATGAAAGTAGAAAGCTGGGTGTGCATCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATCTGGATTAAATGAAAGTAGAAAGCTGGGTGTGCATCTGACT  600

seq1  CATCTCTCTCTGCTTCCTGACCATGGACACAGTGTGAGACTGCCTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTCTGCTTCCTGACCATGGACACAGTGTGAGACTGCCTGTGTG  650

seq1  CATCTGACTCATCTCTCTCTGCTTCCTGACCATGGACACAGTGTGAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACTCATCTCTCTCTGCTTCCTGACCATGGACACAGTGTGAGACT  700

seq1  GCCTGAACCTCCTTTGCTTCATTGCTGTGATGGACCACACCCTTAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAACCTCCTTTGCTTCATTGCTGTGATGGACCACACCCTTAAACTG  750

seq1  CCAGCCAACACAACCCTCTCCCTCCTGAAGTAGCCTTTGTCTGGTGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAACACAACCCTCTCCCTCCTGAAGTAGCCTTTGTCTGGTGTTCT  800

seq1  GTCACAACAAGATGATTACAGCACCTCAATGAAGGATTTTCTTTTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACAAGATGATTACAGCACCTCAATGAAGGATTTTCTTTTTCTTA  850

seq1  TTTATTTTGCCTGTGGA-TTTTTTTTTTTAGTTTCTTCAACATATATTCT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTATTTTGCCTGTGGATTTTTTTTTTTTAGTTTCTTCAACATATATTCT  900

seq1  AATAACCTTTATGAAATTGAAAACATTTCCATCTCTATTCTTTCAAATG-  948
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AATAACCTTTATGAAATTGAAAACATTTCCATCTCTATTC-TTCAAATGT  949

seq1  TTTTTTTTTCAATCCCTATCTCTTTCTTCTTTCTTTCAGGACTCTAGAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCAATCCCTATCTCTTTCTTCTTTCTTTCAGGACTCTAGAGT  999

seq1  CATAATGTTAATTTTTGCTGTTGCAGCTTTGTAGGTCCCTAAGCCATGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATAATGTTAATTTTTGCTGTTGCAGCTTTGTAGGTCCCTAAG-CATGCT  1048

seq1  TCATTAAGTTTTCTCAATCTCTCTGCTGCCGTTGTTCAAACAGAGGACCA  1098
      |||||||||||||||||||||||||||||   ||||| |||||| |||  
seq2  TCATTAAGTTTTCTCAATCTCTCTGCTGC--GTGTTC-AACAGA-GAC--  1092

seq1  ACTGTCATTC  1108
      ||||||||||
seq2  ACTGTCATTC  1102


seq1: chr13_81696868_81697988
seq2: B6Ng01-289J07.g_66_1179 (reverse)

seq1  ATGTATATTTCTGTGTTATAACTACTTACTGAACTAAATATGGAAAGGGT  50
      |||||||||||   ||||| ||||| |||||||||| |||| | |||| |
seq2  ATGTATATTTCCTGGTTAT-ACTACCTACTGAACTACATAT-GCAAGGAT  48

seq1  TGGTTCTGTTCCAATTTTAAAACTACTGAATACTAT-AGAGAACTTGAAA  99
      ||| |||||||||| ||| ||||||||||||||||| ||||||| |||||
seq2  TGG-TCTGTTCCAA-TTTGAAACTACTGAATACTATAAGAGAACCTGAAA  96

seq1  GCTCTATGTGTTAAAAATTCATCTCAAGTTAACTAAAGTGGTGATTCTAA  149
      |||||||||||  |||| ||||||||||||||||||||||||||||||||
seq2  GCTCTATGTGT--AAAAATCATCTCAAGTTAACTAAAGTGGTGATTCTAA  144

seq1  GGGAGTGGTGGTTTCTACA-GGCCAAATATATCATTTTGTACAAAACCTA  198
       |||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  -GGAGTGGTGGTTTCTACAGGGCCAAATATATCATTTTGTAC-AAACCTA  192

seq1  ACTGAACATAGAAACCAGTAGTTCTTAGAAACACTACATTCAAGCATGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACATAGAAACCAGTAGTTCTTAGAAACACTACATTCAAGCATGCA  242

seq1  GCACTTTTCAAGACAGTAACAGTAGACAGTCCAGCTATAAATCACTACAC  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAC-TTTCAAGACAGTAACAGTAGACAGTCCAGCTATAAATCACTACAC  291

seq1  CTCCATAGTCCTTTTTAGGATTTTGTCAATATATAGTTCAGTTGCTTTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTCCTTTTTAGGATTTTGTCAATATATAGTTCAGTTGCTTTGT  341

seq1  TTTTTAGTTTGGTTTTTGGTGATTTATGACAGGATCTCATTATTGCTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTTGGTTTTTGGTGATTTATGACAGGATCTCATTATTGCTTCT  391

seq1  GGCCAACAACTTGCTAAAGAGCCCAGGTTGGCTTTGCTCATGATTCTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACAACTTGCTAAAGAGCCCAGGTTGGCTTTGCTCATGATTCTCCT  441

seq1  GCTTCAGACTCCTAAGTATACACAGTCCACAGTGAGTTATCCTAAGAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGACTCCTAAGTATACACAGTCCACAGTGAGTTATCCTAAGAGAG  491

seq1  GGTGTGTGATTTGACTAAAAGCCAACAAAGATTATCCCTTCAAAGCAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGATTTGACTAAAAGCCAACAAAGATTATCCCTTCAAAGCAAGG  541

seq1  CACGGAACTCATTGGTTCACCTGCTGATGACACAGTACCTGTAATTATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAACTCATTGGTTCACCTGCTGATGACACAGTACCTGTAATTATTT  591

seq1  TTAGTTAATATTTTCTCTCAATGGCTCTTCTGTCTTTTTTTCCATAACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATATTTTCTCTCAATGGCTCTTCTGTCTTTTTTTCCATAACCC  641

seq1  TTCACCTCCAGACACACTGAAGGAGAAAGAGTTTCCCAGATATAATGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCCAGACACACTGAAGGAGAAAGAGTTTCCCAGATATAATGAGC  691

seq1  TGTTTCACAGTTCCAGACCTTTGCTCATTCCTGTGCAAAAACAGTTCCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACAGTTCCAGACCTTTGCTCATTCCTGTGCAAAAACAGTTCCTT  741

seq1  CCTGATCACTAACTAGAGACAAACAAGATTCCTCTCGTTTCTTTTCTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCACTAACTAGAGACAAACAAGATTCCTCTCGTTTCTTTTCTTCC  791

seq1  CACAAAGTTCTGTAGTGATTTGCTTGCACAGCCTTAACTTAGAGCCTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTCTGTAGTGATTTGCTTGCACAGCCTTAACTTAGAGCCTGTT  841

seq1  TCTGATTTCCCCAGTTGAGTGTATCTGAAACACTCAACTTAACACTGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCCCCAGTTGAGTGTATCTGAAACACTCAACTTAACACTGTTT  891

seq1  TGGTCTTGGTAGGCACACAGATTTACTAGAGAAAACATAAAGTCAAGTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGTAGGCACACAGATTTACTAGAGAAAACATAAAGTCAAGTTC  941

seq1  CAAAATATTTGCTAGCTCTTTCTTTCAAAAAATTCAAACTTTTTAATTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTGCTAGCTCTTTCTTTCAAAAAATTCAAACTTTTTAATTAA  991

seq1  AGAGTTGAGACTCTTTCCTATTCAGTGAGCTAGTCACAATGCAGACAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGACTCTTTCCTATTCAGTGAGCTAGTCACAATGCAGACAACT  1041

seq1  CACCATCAGTAATAGCTTCTCCTTTCAGACTCTTTATGCCTCTGGGCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAGTAATAGCTTCTCCTTTCAGACTCTTTATGCCTCTGGGCATT  1091

seq1  GCCTTTCCGTCCAGATAGAATTC  1121
      |||||||||||||||||||||||
seq2  GCCTTTCCGTCCAGATAGAATTC  1114


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