BAC Information

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BAC

Clone NameB6Ng01-289M13
Chromosome13 (Build37)
Map Location 84,021,300 - 84,200,488
singlet/doubletdoublet
Overlap gene2810049E08Rik, LOC100043119, LOC667081
Upstream geneLOC667018, Mef2c, LOC100043111, LOC623241, LOC432789
Downstream geneLOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M13.bB6Ng01-289M13.g
ACCGA087087GA087088
length1,114697
definitionB6Ng01-289M13.b B6Ng01-289M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,021,300 - 84,022,402)(84,199,793 - 84,200,488)
sequence
gaattcaattgacaattagaatagaagagaactctagtgaattacttgat
caagatcattactagtactagaaaacattagctgtgtagcaaatagtgta
aaatattcttctgaaagttctattctgaaattttgctaaataattaagta
ttacattggtaaagcaaaataacactaataaaaagattcctcatacctca
ttgatctccatctacatacatggcttgacttttgcacaaaaatgaagttt
gctagctggaatgaataatttttcccataactctctctgaggacttaaat
gtgtcaataggcttgttcatattttcatggacatacaagcactgtttctt
caaactatactatttcagggcatcaaaatgaaccagtaagttatcatcat
tctttctgacaatgccaagggtctcttctctctgaaacctaaatttctaa
gcccctaagagacttttgtggaaattagtggcaaaatttgttactatctg
cttttctttcattatatttttaaaaatcacattaagaagtacttactgaa
cgtgtgtacacatgtgcgcatgcatgtgtgtgtctgtgcacaccgtggaa
tttggagaatgttctcaggagatgcctttctccttccactctgtgggtta
cagaaatcaaactcagattactgggctaggatagatcatgcctttaccca
ctgaatcagtttgttgttccccaaccattccttctgaataagattttaag
tcagaaaatttggcttattcattgagagatttttggttgaggattgcaaa
acatacaaaatactcaagagctaaagggaatcaccagtcacagtgtaact
tctacaggcaagaaatctgactgtacactctatctgtgttgttggtctct
gtaacaatcctgtgtatcaccacaaatgttgtttactttcatggatgagc
ttctaccaaccagaaaggggaagcttcaagcttaaggcaaggccatattt
tttcttgaatccgcataccatactggaaggttatatttcaggaaaaccaa
gcgaacaaaccaagccaaaccaaacaacctgtaaaatcctggatatgacc
ttggctgtggggtt
gaattcagagatgttatggaccttttagtgtttcaacaaaaagttgagga
ccgtgaagtcagaaatcctctccccaaatgttaagggccaggttgcctgc
tgctgtttctctgtgcagactcatggagacgggtgcctctcagcctttgc
tctgccctctcttctgtgatttctttattttttaaattggccctaccctt
ttctactagatcgcttgatttggccatacttcccttagtacattctcatt
gttgctctcagaacttatatgaggtttggactggtagtgtttttccttat
tttcaaagctttgagattcagatgtgaagagctaagacagttctctggac
atgctcacagattctacccaagaccttaagccatgcttttacacttatgg
gaaaaggaaaaaatatgcacaagcttctgatactaagggcacagcctgga
catacaccttgtcctcttcttcttggcctcatctgccctaaagaatgaat
atattcatccctaaggttgctgcttcaaagtgaccagtgagatgctaaca
ggtcagctggctgtcctgttggacagagggtccataaaatcagagaagac
ttggtatggttgaaagaagaaggtagtccagcctgaggggagccccctgt
aaatctctccaggagctttgttcctggtaggggtaggggtgggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84021300_84022402
seq2: B6Ng01-289M13.b_49_1162

seq1  GAATTCAATTGACAATTAGAATAGAAGAGAACTCTAGTGAATTACTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGACAATTAGAATAGAAGAGAACTCTAGTGAATTACTTGAT  50

seq1  CAAGATCATTACTAGTACTAGAAAACATTAGCTGTGTAGCAAATAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCATTACTAGTACTAGAAAACATTAGCTGTGTAGCAAATAGTGTA  100

seq1  AAATATTCTTCTGAAAGTTCTATTCTGAAATTTTGCTAAATAATTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTTCTGAAAGTTCTATTCTGAAATTTTGCTAAATAATTAAGTA  150

seq1  TTACATTGGTAAAGCAAAATAACACTAATAAAAAGATTCCTCATACCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGGTAAAGCAAAATAACACTAATAAAAAGATTCCTCATACCTCA  200

seq1  TTGATCTCCATCTACATACATGGCTTGACTTTTGCACAAAAATGAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCCATCTACATACATGGCTTGACTTTTGCACAAAAATGAAGTTT  250

seq1  GCTAGCTGGAATGAATAATTTTTCCCATAACTCTCTCTGAGGACTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTGGAATGAATAATTTTTCCCATAACTCTCTCTGAGGACTTAAAT  300

seq1  GTGTCAATAGGCTTGTTCATATTTTCATGGACATACAAGCACTGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATAGGCTTGTTCATATTTTCATGGACATACAAGCACTGTTTCTT  350

seq1  CAAACTATACTATTTCAGGGCATCAAAATGAACCAGTAAGTTATCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATACTATTTCAGGGCATCAAAATGAACCAGTAAGTTATCATCAT  400

seq1  TCTTTCTGACAATGCCAAGGGTCTCTTCTCTCTGAAACCTAAATTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGACAATGCCAAGGGTCTCTTCTCTCTGAAACCTAAATTTCTAA  450

seq1  GCCCCTAAGAGACTTTTGTGGAAATTAGTGGCAAAATTTGTTACTATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAAGAGACTTTTGTGGAAATTAGTGGCAAAATTTGTTACTATCTG  500

seq1  CTTTTCTTTCATTATATTTTTAAAAATCACATTAAGAAGTACTTACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCATTATATTTTTAAAAATCACATTAAGAAGTACTTACTGAA  550

seq1  CGTGTGTACACATGTGCGCATGCATGTGTGTGTCTGTGCACACCGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTACACATGTGCGCATGCATGTGTGTGTCTGTGCACACCGTGGAA  600

seq1  TTTGGAGAATGTTCTCAGGAGATGCCTTTCTCCTTCCACTCTGTGGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAATGTTCTCAGGAGATGCCTTTCTCCTTCCACTCTGTGGGTTA  650

seq1  CAGAAATCAAACTCAGATTACTGGGCTAGGATAGATCATGCCTTTACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCAAACTCAGATTACTGGGCTAGGATAGATCATGCCTTTACCCA  700

seq1  CTGAATCAGTTTGTTGTTCCCCAACCATTCCTTCTGAATAAGATTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAGTTTGTTGTTCCCCAACCATTCCTTCTGAATAAGATTTTAAG  750

seq1  TCAGAAAATTTGGCTTATTCATTGAGAGATTTTTGGTTGAGGATTGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATTTGGCTTATTCATTGAGAGATTTTTGGTTGAGGATTGCAAA  800

seq1  ACATACAAAATACTCAAGAGCTAAAGGGAATCAACAGTCACAGTGTAACT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACATACAAAATACTCAAGAGCTAAAGGGAATCACCAGTCACAGTGTAACT  850

seq1  TCTACAGGCAAGAAATCTGACTGTACACTCTATCTGTGTTGTTGGTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGCAAGAAATCTGACTGTACACTCTATCTGTGTTGTTGGTCTCT  900

seq1  GTAACAATCCTGTGTATCACCACAAATGTTGTTTACTTTCATGGATGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAATCCTGTGTATCACCACAAATGTTGTTTACTTTCATGGATGAGC  950

seq1  TTCTACCAACCAAGAAAGGGGAAGCTTC-AGCTTAAGGCAAGGCCA-ATA  998
      ||||||||||| |||||||||||||||| ||||||||||||||||| || 
seq2  TTCTACCAACC-AGAAAGGGGAAGCTTCAAGCTTAAGGCAAGGCCATATT  999

seq1  TTTTTCTGAAT-CGCATACCATACTGAAAG--TATATTCCA-GAAAAACA  1044
      ||||  ||||| |||||||||||||| |||  |||||| || ||||| ||
seq2  TTTTCTTGAATCCGCATACCATACTGGAAGGTTATATTTCAGGAAAACCA  1049

seq1  AGCGAACAAA-CAAG-CAAACAAACAAACGTGAAGAAT-CTGGATATGA-  1090
      |||||||||| |||| ||||| ||  ||| || | ||| |||||||||| 
seq2  AGCGAACAAACCAAGCCAAACCAAACAACCTGTAAAATCCTGGATATGAC  1099

seq1  CTTGG--TTGGGGTT  1103
      |||||   |||||||
seq2  CTTGGCTGTGGGGTT  1114

seq1: chr13_84199793_84200488
seq2: B6Ng01-289M13.g_70_766 (reverse)

seq1  AACCCCCACCCCTACCCCTACCAGGAACAAAGCTCCTGGAGAGATTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCACCCCTACCCCTACCAGGAACAAAGCTCCTGGAGAGATTTACA  50

seq1  GGGGGCTCCCCTCAGGCTGGACTACCTTCTTCTTTCAACCATACCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTCCCCTCAGGCTGGACTACCTTCTTCTTTCAACCATACCAAGTC  100

seq1  TTCTCTGA-TTTATGGACCCTCTGTCCAACAGGACAGCCAGCTGACCTGT  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATTTTATGGACCCTCTGTCCAACAGGACAGCCAGCTGACCTGT  150

seq1  TAGCATCTCACTGGTCACTTTGAAGCAGCAACCTTAGGGATGAATATATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTCACTGGTCACTTTGAAGCAGCAACCTTAGGGATGAATATATT  200

seq1  CATTCTTTAGGGCAGATGAGGCCAAGAAGAAGAGGACAAGGTGTATGTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAGGGCAGATGAGGCCAAGAAGAAGAGGACAAGGTGTATGTCC  250

seq1  AGGCTGTGCCCTTAGTATCAGAAGCTTGTGCATATTTTTTCCTTTTCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGCCCTTAGTATCAGAAGCTTGTGCATATTTTTTCCTTTTCCCA  300

seq1  TAAGTGTAAAAGCATGGCTTAAGGTCTTGGGTAGAATCTGTGAGCATGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAAAAGCATGGCTTAAGGTCTTGGGTAGAATCTGTGAGCATGTC  350

seq1  CAGAGAACTGTCTTAGCTCTTCACATCTGAATCTCAAAGCTTTGAAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTGTCTTAGCTCTTCACATCTGAATCTCAAAGCTTTGAAAATA  400

seq1  AGGAAAAACACTACCAGTCCAAACCTCATATAAGTTCTGAGAGCAACAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAACACTACCAGTCCAAACCTCATATAAGTTCTGAGAGCAACAAT  450

seq1  GAGAATGTACTAAGGGAAGTATGGCCAAATCAAGCGATCTAGTAGAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTACTAAGGGAAGTATGGCCAAATCAAGCGATCTAGTAGAAAAG  500

seq1  GGTAGGGCCAATTTAAAAAATAAAGAAATCACAGAAGAGAGGGCAGAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGCCAATTTAAAAAATAAAGAAATCACAGAAGAGAGGGCAGAGCA  550

seq1  AAGGCTGAGAGGCACCCGTCTCCATGAGTCTGCACAGAGAAACAGCAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGAGGCACCCGTCTCCATGAGTCTGCACAGAGAAACAGCAGCA  600

seq1  GGCAACCTGGCCCTTAACATTTGGGGAGAGGATTTCTGACTTCACGGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCTGGCCCTTAACATTTGGGGAGAGGATTTCTGACTTCACGGTCC  650

seq1  TCAACTTTTTGTTGAAACACTAAAAGGTCCATAACATCTCTGAATTC  696
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTTGTTGAAACACTAAAAGGTCCATAACATCTCTGAATTC  697