BAC Information

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BAC

Clone NameB6Ng01-289M19
Chromosome13 (Build37)
Map Location 55,014,299 - 55,147,959
singlet/doubletdoublet
Overlap geneUnc5a, Hk3, Uimc1
Upstream geneDrd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Downstream geneLOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M19.bB6Ng01-289M19.g
ACCGA087099GA087100
length1,015398
definitionB6Ng01-289M19.b B6Ng01-289M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,147,086 - 55,147,959)(55,014,299 - 55,014,702)
sequence
gaattcagtagtcattcagtccacaaggctggatgtcccagctggtcttc
agtatatgttagaataaggctctaatgccattgaagtaatagatgtgcta
gcaagacgagggcaaacaagcaaagatcatacacttccttctatgccctt
aaatagagttgcaggagagggtatggcccagatgtatctttctgccttaa
gatctggatcaaagtcgtatgtcttcctacctcaaagatccttactagaa
gtggattcatccacttcaaactgagttaaaaatcaggtgtgctctccatt
tctggattgtagtccattccagatgttgttaacttgacagctaatagagc
catcacaagaagagaatatgttaccatgctagctggttttatgttagctt
gacaaaagctagaataatttgggaagagggaaccttagttgagaaaatgt
ccctaccagattggccctcgagcaagttgctgatacattttcttgattga
tgattgatgtagagggaccagcttactgtgggcagtaccacttctcagct
ggtgatgctataagaaagcaggctgagcaagccataaacagtaatccagt
aagctgcactcttccatagcctctgcaccagctcctgcctccaggttcct
gccctgacttccttcggtgatatggaactgtaagctgaagtcaacccttt
cctccccaagttgctttaggtcttactacagcaacagaagccccaactaa
gtcagtcagagatagaaaggggaaaaagtagcttcaaacttctcacacgt
gaacagggttaagtatagctggagtcgagcaaatgaaagagataaacaag
agactagagaaaaattgggaaggcacaggtagatcacagagttctagact
ctaaaaaggactttgacttttcctcttgagagtaatcactggaaagactt
gagcaaagagtgtatttttaagcagagaatggtaattttaagaaaaagtg
tcgctcagttgctgc
agacaattgctaatgtccaggaagccgccctccgccggccctcaccaaca
ctgttttgatgtgctaacaactcttaatgaatatcctaatgagtcactaa
aaatggcatcattagtttgagaacagaacagtctgcagacacgagtgtcc
aaaacaaccaggcgcttagccaggaaccagccactgccccctcctagccc
ttctgggcaggcctgccctcccccgcgcgagcaaggggcgggctgggtgg
gggtttagcctctgcctcctcaggttctgggttgcctttttagttgcttc
ctttctactgttagtacaccaggaggctggagctcaagaagggagaaaga
tgacaaacggattgggaaggtaggggaggggctgggacgggagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55147086_55147959
seq2: B6Ng01-289M19.b_51_924 (reverse)

seq1  GCCTTCCCAATTTTTCTCTAGTCTCTTGTTTATCTCTTTCATTTGCTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAATTTTTCTCTAGTCTCTTGTTTATCTCTTTCATTTGCTCGA  50

seq1  CTCCAGCTATACTTAACCCTGTTCACGTGTGAGAAGTTTGAAGCTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTATACTTAACCCTGTTCACGTGTGAGAAGTTTGAAGCTACTTT  100

seq1  TTCCCCTTTCTATCTCTGACTGACTTAGTTGGGGCTTCTGTTGCTGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTCTATCTCTGACTGACTTAGTTGGGGCTTCTGTTGCTGTAGT  150

seq1  AAGACCTAAAGCAACTTGGGGAGGAAAGGGTTGACTTCAGCTTACAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTAAAGCAACTTGGGGAGGAAAGGGTTGACTTCAGCTTACAGTTC  200

seq1  CATATCACCGAAGGAAGTCAGGGCAGGAACCTGGAGGCAGGAGCTGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACCGAAGGAAGTCAGGGCAGGAACCTGGAGGCAGGAGCTGGTGC  250

seq1  AGAGGCTATGGAAGAGTGCAGCTTACTGGATTACTGTTTATGGCTTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTATGGAAGAGTGCAGCTTACTGGATTACTGTTTATGGCTTGCTC  300

seq1  AGCCTGCTTTCTTATAGCATCACCAGCTGAGAAGTGGTACTGCCCACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTTTCTTATAGCATCACCAGCTGAGAAGTGGTACTGCCCACAGT  350

seq1  AAGCTGGTCCCTCTACATCAATCATCAATCAAGAAAATGTATCAGCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTCCCTCTACATCAATCATCAATCAAGAAAATGTATCAGCAACT  400

seq1  TGCTCGAGGGCCAATCTGGTAGGGACATTTTCTCAACTAAGGTTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGAGGGCCAATCTGGTAGGGACATTTTCTCAACTAAGGTTCCCTCT  450

seq1  TCCCAAATTATTCTAGCTTTTGTCAAGCTAACATAAAACCAGCTAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATTATTCTAGCTTTTGTCAAGCTAACATAAAACCAGCTAGCATG  500

seq1  GTAACATATTCTCTTCTTGTGATGGCTCTATTAGCTGTCAAGTTAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATATTCTCTTCTTGTGATGGCTCTATTAGCTGTCAAGTTAACAAC  550

seq1  ATCTGGAATGGACTACAATCCAGAAATGGAGAGCACACCTGATTTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAATGGACTACAATCCAGAAATGGAGAGCACACCTGATTTTTAAC  600

seq1  TCAGTTTGAAGTGGATGAATCCACTTCTAGTAAGGATCTTTGAGGTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGAAGTGGATGAATCCACTTCTAGTAAGGATCTTTGAGGTAGGA  650

seq1  AGACATACGACTTTGATCCAGATCTTAAGGCAGAAAGATACATCTGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACGACTTTGATCCAGATCTTAAGGCAGAAAGATACATCTGGGCC  700

seq1  ATACCCTCTCCTGCAACTCTATTTAAGGGCATAGAAGGAAGTGTATGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCTCCTGCAACTCTATTTAAGGGCATAGAAGGAAGTGTATGATC  750

seq1  TTTGCTTGTTTGCCCTCGTCTTGCTAGCACATCTATTACTTCAATGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGTTTGCCCTCGTCTTGCTAGCACATCTATTACTTCAATGGCAT  800

seq1  TAGAGCCTTATTCTAACATATACTGAAGACCAGCTGGGACATCCAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTATTCTAACATATACTGAAGACCAGCTGGGACATCCAGCCTT  850

seq1  GTGGACTGAATGACTACTGAATTC  874
      ||||||||||||||||||||||||
seq2  GTGGACTGAATGACTACTGAATTC  874

seq1: chr13_55014299_55014702
seq2: B6Ng01-289M19.g_67_470

seq1  GAATTCAGACAATTGCTAATGTCCAGGAAGCCGCCCTCCGCCGGCCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACAATTGCTAATGTCCAGGAAGCCGCCCTCCGCCGGCCCTCA  50

seq1  CCAACACTGTTTTGATGTGCTAACAACTCTTAATGAATATCCTAATGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGTTTTGATGTGCTAACAACTCTTAATGAATATCCTAATGAGT  100

seq1  CACTAAAAATGGCATCATTAGTTTGAGAACAGAACAGTCTGCAGACACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAATGGCATCATTAGTTTGAGAACAGAACAGTCTGCAGACACGA  150

seq1  GTGTCCAAAACAACCAGGCGCTTAGCCAGGAACCAGCCACTGCCCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAAACAACCAGGCGCTTAGCCAGGAACCAGCCACTGCCCCCTCC  200

seq1  TAGCCCTTCTGGGCAGGCCTGCCCTCCCCCGCGCGAGCAAGGGGCGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTCTGGGCAGGCCTGCCCTCCCCCGCGCGAGCAAGGGGCGGGCT  250

seq1  GGGTGGGGGTTTAGCCTCTGCCTCCTCAGGTTCTGGGTTGCCTTTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTTTAGCCTCTGCCTCCTCAGGTTCTGGGTTGCCTTTTTAGT  300

seq1  TGCTTCCTTTCTACTGTTAGTACACCAGGAGGCTGGAGCTCAAGAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTTCTACTGTTAGTACACCAGGAGGCTGGAGCTCAAGAAGGGA  350

seq1  GAAAGATGACAAACGGATTGGGAAGGTAGGGGAGGGGCTGGGACGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGACAAACGGATTGGGAAGGTAGGGGAGGGGCTGGGACGGGAGA  400

seq1  GAGG  404
      ||||
seq2  GAGG  404