BAC Information

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BAC

Clone NameB6Ng01-290C08
Chromosome12 (Build37)13 (Build37)
Map Location 60,637,510 - 60,639,72636,684,902 - 36,685,656
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneLOC665644, EG622488, LOC665665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290C08.bB6Ng01-290C08.g
ACCGA087358GA087359
length8191,113
definitionB6Ng01-290C08.b B6Ng01-290C08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,637,510 - 60,639,726)(36,684,902 - 36,685,656)
sequence
gaattcaccggctttccttctgctcccctgtctttgttattttcattcta
tatttaaccggttcccctcctgacggccaattgtgtcttatgttggcctt
gctcgctctttttcttaaattaggctaggcaagatctagtcaatctggct
cagtgaaagaattctctgatgctctagtgctatggattgaatttagcatg
tttattataagcagcattcggctggctccccccctaatttttaatatatt
tagcaactcaaggaagttatcacaacaccgcttctcttgcttcacttttg
actttgatcgtcagaaaataaattactgcttatgaactcagactaataaa
ctataaattttggtattaaaagttcaaatgactaaaatacaggtgtgatc
cagtaatagaatatgttcatagcgtatgggctccatctccaccaccacta
gtaaaaggatttcttttactattatttaatcattatgtataaatgaatat
aattgcatttttgtattaagaaaaacttgtaaaaccttattgcaaaggat
acctcacactttagctatggcatatatagaaatatgggactgacctgtaa
cttctgccccactggctagattttagactctgctctgcaggttgctgaaa
gataaaacgctataatgaatattacaggggtaattgaccacttttaagtt
ggacttgaggctctgggagaaaacccatgcatattactgttaagacaggt
caaatgtccatcactggggatataactgacactagaggaaaccccatacc
cttgtttgctaactggaaa
gaattctcagtttactgtggcttcatgctcttggcctgttcaagctcatt
acagatggggcctcgatgctgagcaggacaaatgagtttaggcttcctcc
aaacaacaaactgtcccccactgctttctaatggataaggaaaaatcaga
tttttttccctccctaatggagtcttacctatccttacagggaggcaggg
taggtaggtaaggaggtaatttttttttcttcttttctcttaaccccttt
cccctctggtcgggatggctcctgaggtgaggctcccatggaaactacct
cattgcccttcttcttgtcctcagaaagggtggggcccctgaccagtttt
ctctggagtatacaccggacagaactgacttcactgtgtcaaagccgctg
tgctgtctccaacctcttttaaacactcttgacaacagctcctattcgga
agaaaccttgtatgattgggttaacaaaatgtgggatgcttttcacagat
agctcatttgtaaaatgattccatttcattcaacctttgaaaaggaggaa
accaggggctggaaagatgccccagtggttaagagcacctacttgctctt
gcagagaatctacatttggtacccagcatcaatattgggttggcgaggct
cacaaccacctgtaactccagttccagggggacttcacagaagtgaacat
tgggacgagcaggcacacatacatgcacataaataagtaatgattaaaat
gaataaaaaataaaaaaggaagaaatagcacattgagacaagatggatga
acccgagcagagtaggctgagtgagaaaagctggacaaagaagaacaagt
atggtgagcactgcaagatcccaggttcacggggttctgagaacagccac
agaagagacagtggaaatggatggtttctaggggctgggggaagggtagc
aggaagctgttgttgcagttaatgtgagctttgcagtaatgctgggaaga
ctggtaataaacatcttattcccacagcattgagctggaataagttcatg
cctgtaattattcacactttacattgcgttataaagatcgagttcacagt
aattgatctacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60637510_60639726
seq2: B6Ng01-290C08.b_69_823 (reverse)

seq1  GTGTCAGTTACATCCCCGGTGATGGACATTTGACCTGTCTTAATAGTACT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCATGGGTTTTTCTCCCAGAGCCTCAAGTCCAACTCAAAAGTGGTCGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTACCCCTGTAATATTTATTTTAGCGTTTTCTCTTTCAGCAACCTGCAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGAGTCTAAAATCATTAATAAAGCTGCATGTGAAATTAATACCCAAGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTGAAGGTAGCATTTAGTGTGGGAGGAAGAAGAAAGAATGGAATTGAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGCTTATGTAGAGAAATATTCAACACTTTCTTTTTTTTCTTTTTTTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACTAGATATTTTCTTTAATTACATTTCAAATGCTATCTCCAAATCCCCCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  ATACCTTCCCCTGACCCTGCTCCCCAACCTACCCACTCCCGCTTCCTGGC  400
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGGCATTCCCCTGTACTGGGGCATATGATCTTCGAAATACCAAGGGCC  450
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCCTCCCATTGATGGATGACTAGACCATCCTCTGCTACATATTCAACT  500
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGACACAGCTCTGGGGTGGGGAGTACTGGTTAGTTCATATTGTTCCTC  550
                                                        
seq2  --------------------------------------------------  0

seq1  CTATAGGGTTGCAGACCCCTTTAGCTCCTTGAGTACTTTCTCTAACTCCT  600
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTGGGGACCCTTATTCAACACTTTCTATAGCATTTTATTTTTTTTGA  650
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAAAAAAATGAGCTGGAGTAATTGTGAGTATGATTTCAGATGTTTATA  700
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAAACGATTTCAGGATTCCATAGTATAAATGATCTAAGAATTTCTTCA  750
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGCAGACATTTAAATTATAGCAGCTCTCTATAAAATGTACAGTCTTGG  800
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTGAGCTTGTTAGTACCTTTTGTAGCATATGGATCTACACTAGCTTC  850
                                                        
seq2  --------------------------------------------------  0

seq1  TGATGGCTGCTCTGATAAATTATCACAAAAGTGTCAATTTAAGATCACAG  900
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTTACTCTCTCCCAGTTCTGGATATGGGCACAATCAATTCAATTCAAT  950
                                                        
seq2  --------------------------------------------------  0

seq1  GGCACACCTTTGAAGAAAACTCCTTATCGCCCAGAAGCCATACATTTCCA  1000
                                                        
seq2  --------------------------------------------------  0

seq1  GTAGCTCCTCAGGTGAGTATGGGGCCACATGCTCCTCTCTCCTCCATGAT  1050
                                                        
seq2  --------------------------------------------------  0

seq1  GGATTGTTGACTGGCTTAACCTTTGCAGGTCTTGTGAGGGTAATCATAGC  1100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTGTGGGTTCACGGGTAAAACAGTGATGTCATGTCATAGTGATAGCAT  1150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCATAGAGTTAGTCTTTGTCTGCTGGCTTTCACAGTGTTCCTGTTCCCT  1200
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCGTGGTGTTCCATAAGCATTGAGGGGGTGTGGGAGTAGTTATACAC  1250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCCATTTAGGGTTGAGCACACAACACTCACTTATTCTCAACACTTTGA  1300
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGGTATCCAGAGTCTCTGAACTGCCTGAATCCCATTATAAGAAGAAGC  1350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTGACCAAGGTTTGGAGCACCACTAATTTATGTGTATAAACATAAA  1400
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTAGAAGACAATTTGACAGCATTTCCAGTTAGCAAACAAGGGTATGG  1450
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTCCTCTAGTGTCAGTTATATCCCCAGTGATGGACATTTGACCTGTC  1500
                 |||||||||||||||||||||||||||||||||||||||
seq2  -----------GTGTCAGTTATATCCCCAGTGATGGACATTTGACCTGTC  39

seq1  TTAACAGTAATATGCATGGGTTTTCTCCCAGAGCCTCAAGTCCAACTTAA  1550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTAATATGCATGGGTTTTCTCCCAGAGCCTCAAGTCCAACTTAA  89

seq1  AAGTGGTCAATTACCCCTGTAATATTCATTTTAGCGTTTTATCTTTCAGC  1600
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTGGTCAATTACCCCTGTAATATTCATTATAGCGTTTTATCTTTCAGC  139

seq1  AACCTGCAGAGCAGAGTCTAAAATCTAGCCAGTGGGGCAGAAGTTACAGG  1650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAGAGCAGAGTCTAAAATCTAGCCAGTGGGGCAGAAGTTACAGG  189

seq1  TCAGTCCCATATTTCTCTATATGCCATAGCTAAAGTGTGAGGTATCCTTT  1700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAGTCCCATATTTCTATATATGCCATAGCTAAAGTGTGAGGTATCCTTT  239

seq1  GCAATAAGGTTTTACAAGTTTTTCTTAATACAAAAATGCAATTATATTCA  1750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGGTTTTACAAGTTTTTCTTAATACAAAAATGCAATTATATTCA  289

seq1  TTTATACATAATGATTAAATAATAGTAAAAGAAATCCTTTTACTAGTGGT  1800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATAATGATTAAATAATAGTAAAAGAAATCCTTTTACTAGTGGT  339

seq1  GCTGGAGATTGAGCCCATATGCTATGAACATATTCTATTACTGGATCACA  1850
      | ||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  GGTGGAGATGGAGCCCATACGCTATGAACATATTCTATTACTGGATCACA  389

seq1  CCTGTATTTTAGTCATTTGAACTTTTAATACCAAAATTTATAGTTTATTA  1900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTTTAGTCATTTGAACTTTTAATACCAAAATTTATAGTTTATTA  439

seq1  GTCTGAGTTCATAAGCAGTAATTTATTTTCTGACGATCAAAGTCAAAAGT  1950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGTTCATAAGCAGTAATTTATTTTCTGACGATCAAAGTCAAAAGT  489

seq1  GAAGCAAGAGAAGCGGTGTTGTGATAACTTCCTTGAGTTGCTAAATCTAT  2000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAGCAAGAGAAGCGGTGTTGTGATAACTTCCTTGAGTTGCTAAATATAT  539

seq1  TAAAAATTATGGTGCTAGCCAGCCGAATGCTGCTTCTAATAAACATGCTA  2050
      ||||||||| || |  ||||||||||||||||||| ||||||||||||||
seq2  TAAAAATTAGGGGGGGAGCCAGCCGAATGCTGCTTATAATAAACATGCTA  589

seq1  AATTCAATCCATAGCACTAGAGCATCAGAGAATTCTTTCACTGAGCCATT  2100
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AATTCAATCCATAGCACTAGAGCATCAGAGAATTCTTTCACTGAGCCAGA  639

seq1  TTGACTTTGATCTTGCCTAGACTAATTTCTGAAATTGAGAGAGCAAGGAA  2150
      ||||| | |||||||||||| |||||||  ||||  ||| ||||||||  
seq2  TTGAC-TAGATCTTGCCTAGCCTAATTTAAGAAAAAGAGCGAGCAAGGCC  688

seq1  AACATAAGACACAATTGGCCGTTTTGAGGGGAACCCGTTAAATATAGAAT  2200
      ||||||||||||||||||||||   |||||||||| ||||||||||||||
seq2  AACATAAGACACAATTGGCCGTCAGGAGGGGAACCGGTTAAATATAGAAT  738

seq1  GATTTAACCAAAGACAG  2217
      ||    | |||||||||
seq2  GAAAATAACAAAGACAG  755

seq1: chr13_36684902_36685656
seq2: B6Ng01-290C08.g_415_1177

seq1  CTCTGGAGTATACACCCTAAGGAACTGACATCACTGTGTCGAAGCCTCTG  50
      ||||||||||||||||  |  |||||||| |||||||||| ||||| |||
seq2  CTCTGGAGTATACACCGGACAGAACTGACTTCACTGTGTCAAAGCCGCTG  50

seq1  TGCTGTCTCCAACCTCATAGTAACACTCTTGACAACAGCTCAGATTCAGA  100
      |||||||||||||||| |   ||||||||||||||||||||  |||| | 
seq2  TGCTGTCTCCAACCTCTTTTAAACACTCTTGACAACAGCTCCTATTC-GG  99

seq1  AAGAAACAGCAGAAGAATGGGTTAAGAAAATGTGTTATGCTTTTCACAGA  150
      |||||||     | || |||||||| ||||||||  ||||||||||||||
seq2  AAGAAACCTTGTATGATTGGGTTAACAAAATGTGGGATGCTTTTCACAGA  149

seq1  TAGCTCATTTGTAAAATGATTCCATTTCATTCAACCTTTGAAAAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATTTGTAAAATGATTCCATTTCATTCAACCTTTGAAAAGGAGGA  199

seq1  AACCAGGGGCTGGAAAGATGCCCCAGTGGTTAAGAGCACCTACTTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGGCTGGAAAGATGCCCCAGTGGTTAAGAGCACCTACTTGCTCT  249

seq1  TGCAGAGAATCTACATTTGGTACCCAGCATCAATATTGGGTTGGCGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAATCTACATTTGGTACCCAGCATCAATATTGGGTTGGCGAGGC  299

seq1  TCACAACCACCTGTAACTCCAGTTCCAGGGGGACTTCACAGAAGTGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCACCTGTAACTCCAGTTCCAGGGGGACTTCACAGAAGTGAACA  349

seq1  TTGGGACGAGCAGGCACACATACATGCACATAAATAAGTAATGATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACGAGCAGGCACACATACATGCACATAAATAAGTAATGATTAAAA  399

seq1  TGAATAAAAAATAAAAAAGGAAGAAATAGCACATTGAGACAAGATGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAAATAAAAAAGGAAGAAATAGCACATTGAGACAAGATGGATG  449

seq1  AACCCGAGCAGAGTAGGCTGAGTGAGAAAAGCTGGACAAAGAAGAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGAGCAGAGTAGGCTGAGTGAGAAAAGCTGGACAAAGAAGAACAAG  499

seq1  TATGGTGAGCACTGCAAGATCCCAGGTTCACGGGGTTCTGAGAACAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGAGCACTGCAAGATCCCAGGTTCACGGGGTTCTGAGAACAGCCA  549

seq1  CAGAAGAGACAGTGG-AATGG-TGGTTTCTAGGGGCTGGGGGAA-GGTAG  597
      ||||||||||||||| ||||| |||||||||||||||||||||| |||||
seq2  CAGAAGAGACAGTGGAAATGGATGGTTTCTAGGGGCTGGGGGAAGGGTAG  599

seq1  CAGGAAGCTGTTG-TGCAGTTAATGTGAGC-TTGCAGTTATGCTGGGAAG  645
      ||||||||||||| |||||||||||||||| ||||||| |||||||||||
seq2  CAGGAAGCTGTTGTTGCAGTTAATGTGAGCTTTGCAGTAATGCTGGGAAG  649

seq1  ACTGGTAATAAACATCT--ATCCCACAGCATTGAGCCTGGAATAAG-TCA  692
      |||||||||||||||||   ||||||||||||||| |||||||||| |||
seq2  ACTGGTAATAAACATCTTATTCCCACAGCATTGAG-CTGGAATAAGTTCA  698

seq1  TG-CTGTATATA-TCACACTTTACA-TGTGTAATAAAGATCAATTTCACA  739
      || |||||  || |||||||||||| || || ||||||||| | ||||||
seq2  TGCCTGTAATTATTCACACTTTACATTGCGTTATAAAGATCGAGTTCACA  748

seq1  GTAATTGATCTTACCA  755
      |||||||||| |||||
seq2  GTAATTGATC-TACCA  763