BAC Information

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BAC

Clone NameB6Ng01-290O05
Chromosome13 (Build37)
Map Location 89,937,523 - 90,042,975
singlet/doubletdoublet
Overlap geneXrcc4
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
Downstream geneTmem167, LOC100043170, LOC624190, EG435376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290O05.bB6Ng01-290O05.g
ACCGA087917GA087918
length1,0061,143
definitionB6Ng01-290O05.b B6Ng01-290O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,041,966 - 90,042,975)(89,937,523 - 89,938,662)
sequence
gaattctgtacgtgttatctaagcaacagagccttgctatcagtttgtgg
atagcaaccaacaatcttggcaaaagtgtgagttgattgggatttcccct
ggaacccctttggctaacttgtcagttttatgtaatccatttttagaagt
ataggtttgattggtgactagagatgtctaggtggggcactgtctccggg
ttgctgatgccatttagatgaccttcatatatgtatgtatacattatagg
aattttctactacattcccttcgtatggcccttagttcagttctccttcc
ctatactccctatatgctccccactttaatcctacattttagccaccacc
atccatccataactgtctattctatttccctttcctggacagacagaatc
ctcccatctattcccttattcgatatctattacataagaatatctaagaa
aagggttacacttcataagtagagaagcatttgtggtgttaagtgaagaa
gacttagaattgtctttatcttagttacttttctattactgtgaacagat
gccatgacctacttaacttctaaagtctttttactggcttgcttaccgtt
tcagaaagtcttcggctggctagaacaatggtgtgaacttacagcttaca
tcctattctacaagtgaaggcaaagagaaggaggaagggaaggagggagg
aaggaaggctgggcctgacagcatgtggaggtagacaggcaagcagacaa
acaaaaacaaaaacaaaaagaaacaaaaaaaagaaactgggcctactgtt
ggtctttggaaaactcacagcctacccccagtggcatatctccaccaacg
aggtcagacctcctaatctttacctaaactgtccaaaaacaagagtctag
gcattcaactatgagcctctgtcggccattgtctttaaaccactgtagtt
ctttaaattatactacaaaactaccatatatagatactttaagtttcttt
tttata
gaattcattagtgcccagtgtggcagctctgctcagtgcccttaatttga
agaaagagacaggaggccggtgtgcccatgcaactccaaaggcggatgat
ctggagttgaaggcttttagagcaaaggactctcctgagaagatggcaat
tattcatggttttttttttttttttcaagccagtggtgacagctctcttt
cctttagtctgtatcagtacattaaaaaaaaaaaattgctacaggcaact
ggatttcatgttaccttggaagaaagagagctaatgcagagtatttcaaa
ggtattatctgtatggctgagcttaagtataaacaatttgactttacaga
aggatgaaggcaaacagaaatagcatggaaaagtgtaatttatcagtaac
tctagcatttaatttttatgtaataggtttgccccccatcgccaaagctt
tgtattgattgattttaaaatcttttatatggtatttctaccacaggtag
gaaaaccatttctctgaagacgctttataacaaacaacaatattctaatc
gttgggacaggaaacagaatcctcaaaacattgctcacattctattaaaa
agaaactttccaactttgactctagctcttagaaataaattcatattaca
agcaacaatacccatgtaggattttatatctgaaccaaatgttgccattc
ctatgatataatatttctttttttgttctattctaatctcttaattcata
gcactgtatagtatcatatttctttttaaacttatattgttcaaactgtt
gaatctattttaaaattagtttcaatttttatttttaccattatcaataa
tacaggatatgtacattgaaaaactacagaataaccatctcagggaaatt
ttttttcatgttaagtttgtaagaaaaattactgtgtacttacacagcat
cagcatattattgggtccttcacaaaaacacttctgacacactcatcaat
ccagtgatgggaagtaacattattaactatttcatttactaataataaaa
acattcagctcagagagtaagaaagttggcttcagataccagaaggtatg
tgaacagagatcgtatcagcggaagtagccatgcataaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90041966_90042975
seq2: B6Ng01-290O05.b_46_1051 (reverse)

seq1  TATAAAAAAGAAACTTTAAAGTATCTATATATTGGTTAGTTTTGTAGTAT  50
      |||||||||||||| |||||||||||||||||  | ||||||||||||| 
seq2  TATAAAAAAGAAAC-TTAAAGTATCTATATAT--GGTAGTTTTGTAGTA-  46

seq1  TAATTTAAAGAACTACAGTGGTTTAAAAGACAATGGCCGACAGAGGCTCA  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAATTTAAAGAACTACAGTGGTTT-AAAGACAATGGCCGACAGAGGCTCA  95

seq1  TAGTTGAATGCCTAGACTCTTGTTTTTGGACAGTTTAGGTAAAGATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAATGCCTAGACTCTTGTTTTTGGACAGTTTAGGTAAAGATTAGG  145

seq1  AGGTCTGACCTCGTTGGTGGAGATATGCCACTGGGGGTAGGCTGTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGACCTCGTTGGTGGAGATATGCCACTGGGGGTAGGCTGTGAGTT  195

seq1  TTCCAAAGACCAACAGTAGGCCCAGTTTC-TTTTTTTGTTTCTTTTTGTT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCAAAGACCAACAGTAGGCCCAGTTTCTTTTTTTTGTTTCTTTTTGTT  245

seq1  TTTGTTTTTGTTTGTCTGCTTGCCTGTCTACCTCCACATGCTGTCAGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTGTCTGCTTGCCTGTCTACCTCCACATGCTGTCAGGCC  295

seq1  CAGCCTTCCTTCCTCCCTCCTTCCCTTCCTCCTTCTCTTTGCCTTCACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCCTTCCTCCCTCCTTCCCTTCCTCCTTCTCTTTGCCTTCACTT  345

seq1  GTAGAATAGGATGTAAGCTGTAAGTTCACACCATTGTTCTAGCCAGCCGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAGGATGTAAGCTGTAAGTTCACACCATTGTTCTAGCCAGCCGA  395

seq1  AGACTTTCTGAAACGGTAAGCAAGCCAGTAAAAAGACTTTAGAAGTTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTGAAACGGTAAGCAAGCCAGTAAAAAGACTTTAGAAGTTAAG  445

seq1  TAGGTCATGGCATCTGTTCACAGTAATAGAAAAGTAACTAAGATAAAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATGGCATCTGTTCACAGTAATAGAAAAGTAACTAAGATAAAGAC  495

seq1  AATTCTAAGTCTTCTTCACTTAACACCACAAATGCTTCTCTACTTATGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAGTCTTCTTCACTTAACACCACAAATGCTTCTCTACTTATGAA  545

seq1  GTGTAACCCTTTTCTTAGATATTCTTATGTAATAGATATCGAATAAGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCCTTTTCTTAGATATTCTTATGTAATAGATATCGAATAAGGGA  595

seq1  ATAGATGGGAGGATTCTGTCTGTCCAGGAAAGGGAAATAGAATAGACAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGGAGGATTCTGTCTGTCCAGGAAAGGGAAATAGAATAGACAGT  645

seq1  TATGGATGGATGGTGGTGGCTAAAATGTAGGATTAAAGTGGGGAGCATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGGATGGTGGTGGCTAAAATGTAGGATTAAAGTGGGGAGCATAT  695

seq1  AGGGAGTATAGGGAAGGAGAACTGAACTAAGGGCCATACGAAGGGAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTATAGGGAAGGAGAACTGAACTAAGGGCCATACGAAGGGAATGT  745

seq1  AGTAGAAAATTCCTATAATGTATACATACATATATGAAGGTCATCTAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAATTCCTATAATGTATACATACATATATGAAGGTCATCTAAAT  795

seq1  GGCATCAGCAACCCGGAGACAGTGCCCCACCTAGACATCTCTAGTCACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGCAACCCGGAGACAGTGCCCCACCTAGACATCTCTAGTCACCA  845

seq1  ATCAAACCTATACTTCTAAAAATGGATTACATAAAACTGACAAGTTAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACCTATACTTCTAAAAATGGATTACATAAAACTGACAAGTTAGCC  895

seq1  AAAGGGGTTCCAGGGGAAATCCCAATCAACTCACACTTTTGCCAAGATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTTCCAGGGGAAATCCCAATCAACTCACACTTTTGCCAAGATTG  945

seq1  TTGGTTGCTATCCACAAACTGATAGCAAGGCTCTGTTGCTTAGATAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGCTATCCACAAACTGATAGCAAGGCTCTGTTGCTTAGATAACAC  995

seq1  GTACAGAATTC  1010
      |||||||||||
seq2  GTACAGAATTC  1006

seq1: chr13_89937523_89938662
seq2: B6Ng01-290O05.g_69_1211

seq1  GAATTCATTAGTGCCCAGTGTGGCAGCTCTGCTCAGTGCCCTTAATTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTGCCCAGTGTGGCAGCTCTGCTCAGTGCCCTTAATTTGA  50

seq1  AGAAAGAGACAGGAGGCCGGTGTGCCCATGCAACTCCAAAGGCGGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGACAGGAGGCCGGTGTGCCCATGCAACTCCAAAGGCGGATGAT  100

seq1  CTGGAGTTGAAGGCTTTTAGAGCAAAGGACTCTCCTGAGAAGATGGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTGAAGGCTTTTAGAGCAAAGGACTCTCCTGAGAAGATGGCAAT  150

seq1  TATTCATGGTTTTTTTTTTTTTTTTCAAGCCAGTGGTGACAGCTCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGGTTTTTTTTTTTTTTTTCAAGCCAGTGGTGACAGCTCTCTTT  200

seq1  CCTTTAGTCTGTATCAGTACATTAAAAAAAAAAAATTGCTACAGGCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTCTGTATCAGTACATTAAAAAAAAAAAATTGCTACAGGCAACT  250

seq1  GGATTTCATGTTACCTTGGAAGAAAGAGAGCTAATGCAGAGTATTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATGTTACCTTGGAAGAAAGAGAGCTAATGCAGAGTATTTCAAA  300

seq1  GGTATTATCTGTATGGCTGAGCTTAAGTATAAACAATTTGACTTTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATCTGTATGGCTGAGCTTAAGTATAAACAATTTGACTTTACAGA  350

seq1  AGGATGAAGGCAAACAGAAATAGCATGGAAAAGTGTAATTTATCAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGGCAAACAGAAATAGCATGGAAAAGTGTAATTTATCAGTAAC  400

seq1  TCTAGCATTTAATTTTTATGTAATAGGTTTGCCCCCCATCGCCAAAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTTAATTTTTATGTAATAGGTTTGCCCCCCATCGCCAAAGCTT  450

seq1  TGTATTGATTGATTTTAAAATCTTTTATATGGTATTTCTACCACAGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGATTGATTTTAAAATCTTTTATATGGTATTTCTACCACAGGTAG  500

seq1  GAAAACCATTTCTCTGAAGACGCTTTATAACAAACAACAATATTCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCATTTCTCTGAAGACGCTTTATAACAAACAACAATATTCTAATC  550

seq1  GTTGGGACAGGAAACAGAATCCTCAAAACATTGCTCACATTCTATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGACAGGAAACAGAATCCTCAAAACATTGCTCACATTCTATTAAAA  600

seq1  AGAAACTTTCCAACTTTGACTCTAGCTCTTAGAAATAAATTCATATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTTCCAACTTTGACTCTAGCTCTTAGAAATAAATTCATATTACA  650

seq1  AGCAACAATACCCATGTAGGATTTTATATCTGAAACCAAATGTTGCCATT  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCAACAATACCCATGTAGGATTTTATATCTG-AACCAAATGTTGCCATT  699

seq1  CCTATGATATAATATTTCTTTTTTTGTTCTATTCTAATCTCTTAATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATATAATATTTCTTTTTTTGTTCTATTCTAATCTCTTAATTCAT  749

seq1  AGCACTGTATAGTATCATATTTCTTTTTAAACTTATATTGTTCAAACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTATAGTATCATATTTCTTTTTAAACTTATATTGTTCAAACTGT  799

seq1  TGAATCTATTTTAAAATTAGTTTCAATTTT--ATTTTACCATTATCAATA  848
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  TGAATCTATTTTAAAATTAGTTTCAATTTTTATTTTTACCATTATCAATA  849

seq1  ATACAGGATATGTACATTGAAAAACTACAGAATAACCATCTCAGGGGAAA  898
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  ATACAGGATATGTACATTGAAAAACTACAGAATAACCATCTCAGGGAAAT  899

seq1  TTTTTTTCATGTTAAGTTTTGTAAGAAAAATTACTGTGTACTTACACAGC  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATGTTAAG-TTTGTAAGAAAAATTACTGTGTACTTACACAGC  948

seq1  ATCAGGCATAATATT-GGTCCTTCACAAAAACAC-TCTGACACACTCATC  996
      |||| ||||| |||| |||||||||||||||||| |||||||||||||||
seq2  ATCA-GCATATTATTGGGTCCTTCACAAAAACACTTCTGACACACTCATC  997

seq1  AATCCAGTGAT-GGAAGT-ACA-TATT-ACTATTTCCATTACTAAT-ATA  1041
      ||||||||||| |||||| ||| |||| ||||||||  |||||||| |||
seq2  AATCCAGTGATGGGAAGTAACATTATTAACTATTTCATTTACTAATAATA  1047

seq1  AAAACATCAAGCTCAGAGAGGTAAAGAAAGTT-GCTTCAGATA-CAGAAA  1089
      |||||||  |||||||||||   ||||||||| |||||||||| ||||| 
seq2  AAAACATTCAGCTCAGAGAG--TAAGAAAGTTGGCTTCAGATACCAGAAG  1095

seq1  GTATGTG-ACAGAGATACAGTATCAGCAGAAAGTAGCCATGCAATAAATA  1138
      ||||||| ||||||||   |||||||| | |||||||||||| |||||||
seq2  GTATGTGAACAGAGAT--CGTATCAGC-GGAAGTAGCCATGC-ATAAATA  1141

seq1  TT  1140
      ||
seq2  TT  1143