BAC Information

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BAC

Clone NameB6Ng01-291P06
Chromosome13 (Build37)
Map Location 88,915,676 - 89,047,600
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291P06.bB6Ng01-291P06.g
ACCGA088712GA088713
length8771,097
definitionB6Ng01-291P06.b B6Ng01-291P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,915,676 - 88,916,481)(89,046,492 - 89,047,600)
sequence
gaattcacacagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttcccagctgaggagttctgaatccaggctggatccttc
tcagcagtctgttttacgggaacctttatgaccgtgacccgcagttctgg
ttccggaatgagggatcttccttgcgccggtgatggtaaccgtcccgggt
tttctcatcccaggatttctcgtctcgggtttcagcaccaactcttacac
gcgttcacgaccggccaggaagaacacagcaaaccagaatcttctgcggc
aaaactttattgcttacatcttcaggagcaagagtgcaagagagagaatg
gcgaaaccccgtcccttttaagaagaattattctccgcctaggacgtatt
actccttgattagctgcagcccatcggccgagttgtcgtcacggggaagg
cagagcacatggggtggaaaactacccttggcacatgcgcagattatttg
tttaccacttagaacacaggatgtcagcgccatcttgcaacggcgaatgt
gagggtggcttcctacaaatacctaataaaaaaagaaattaaaaaaagaa
tctccccaaaaaagaacccccccaaaaaaagatggagcacagggccccca
atggagaagctatagacagcacccatggggctgaaggggtctacaaccct
ataggtggaacaacaatatgaaataactggtacccccccccccagagctc
atatctctagctgcatatgtagcaatagttgccatagtcggccatcactg
ggaaagagagggccactcggtattgcaaacttttatatgccccaatacag
gggaatgccagggccctagaagtggga

gaattcagcaggcaaccacactctgaagcaagagtgtatttcacatacaa
agtgctttcttttctattcaatgctacactagagacctgccacactgtga
atttagtcggcttctttatttacagaaaccatgattgcactttttaccta
cttcacagcttactaggttggaaagggtaatagcacacatagactagagt
ttattcctttagagggattcagatgcaaaccttcctctgtgcatggttta
ttttttctcttgccctcatcaaatacggcaatacacttcaggttataatc
aattaaactgattctcagctgttcagcattctgggttccctatgtagcag
cctgtacatgcttgagctacactctagggtatttagacagagcttctggg
aactctgcccacccttcagccatgcagtgtcagccatgctggtacagaag
gttaatgaagtctagaaggacctactgcatggtttagagcattctactgg
tgtttgtctgaaaatgccccacactttagatgtctatgaccaaattgtaa
ttgcactgattcagaataagagtagaccattacagcaggcacagaacttt
cagtttggtgatagtatttgtcattattgagggattagtatctatgtaag
tttgataatggcagagttttattaaaggaagcccatgtttggtcatttac
tttatttatataaggcatatgtagtttcctaatttctaaagaaaatgttc
atttaatctttaataaaggacttacaacttaattttaaatattataaaat
ttttgaaactattttgatactttattaagcacattaagtgtcagtacttg
atttccaaagatcttgatcttatttatgatatatttctacagtctcatta
gaataattgtgaataaagagaaggctttcacagtttgcatctttgcaata
ccaaatgtgtatgtctaatcatatttttttcaaatggtcatgaatttatt
ttaagattcagctaatcctaaagttaacaatttatacgagctaaatgata
tctggattcaaataacaaaatatctatgtcgtggagtatatacgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88915676_88916481
seq2: B6Ng01-291P06.b_115_924

seq1  GCTGAGGAGTTCTGAATCCAGGCTGGATCCTTCTCAGCAGTCTGTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAGTTCTGAATCCAGGCTGGATCCTTCTCAGCAGTCTGTTTTAC  50

seq1  GGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC  100

seq1  TTCCTTGCGCCGGTGATGGTAACCGTCCCGGGTTTTCTCATCCCAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCGCCGGTGATGGTAACCGTCCCGGGTTTTCTCATCCCAGGATT  150

seq1  TCTCGTCTCGGGTTTCAGCACCAACTCTTACACGCGTTCACGACCGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTCTCGGGTTTCAGCACCAACTCTTACACGCGTTCACGACCGGCCA  200

seq1  GGAAGAACACAGCAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACACAGCAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTAC  250

seq1  ATCTTCAGGAGCAAGAGTGCAAGAGAGAGAATGGCGAAACCCCGTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGAGCAAGAGTGCAAGAGAGAGAATGGCGAAACCCCGTCCCTT  300

seq1  TTAAGAAGAATTATTCTCCGCCTAGGACGTATTACTCCTTGATTAGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAATTATTCTCCGCCTAGGACGTATTACTCCTTGATTAGCTGC  350

seq1  AGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGG  400

seq1  AAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450

seq1  AGGATGTCAGCGCCATCTTGCAACGGCGAATGTGAGGGTGGCTTCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCAGCGCCATCTTGCAACGGCGAATGTGAGGGTGGCTTCCTACA  500

seq1  AATACCTAATAAAAAAAGAAATTAAAAAAAGAATCTCCCCAAAAAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTAATAAAAAAAGAAATTAAAAAAAGAATCTCCCCAAAAAAGAAC  550

seq1  CCCCCCAAAAAAAGATGGAGCACAGGGCCCCCAATGGAGAAGCTATAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAAAAAAGATGGAGCACAGGGCCCCCAATGGAGAAGCTATAGAC  600

seq1  AGCACCCATGGGGCTGAAGGGGTCTACAACCCTATAGGTGGAACAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCATGGGGCTGAAGGGGTCTACAACCCTATAGGTGGAACAACAAT  650

seq1  ATGAAATAACTGGTACCCCCCCCCCCAGAGCTCATATCTCTAGCTGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAACTGGTACCCCCCCCCCCAGAGCTCATATCTCTAGCTGCATA  700

seq1  TGTAGCAATAGTTGCCATAGTCGGCCATCACTGGG-AAGAGA-GGCCACT  748
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  TGTAGCAATAGTTGCCATAGTCGGCCATCACTGGGAAAGAGAGGGCCACT  750

seq1  CGGTATTGCAAAC-TTTATATGCCCCAATACAGGGGAATGCCAGGG-CCA  796
      ||||||||||||| |||||||||||||||||||||||||||||||| || 
seq2  CGGTATTGCAAACTTTTATATGCCCCAATACAGGGGAATGCCAGGGCCCT  800

seq1  AGAAGTGGGA  806
      ||||||||||
seq2  AGAAGTGGGA  810


seq1: chr13_89046492_89047600
seq2: B6Ng01-291P06.g_69_1165 (reverse)

seq1  CCTCTGTATATACTCCAACGACATAGATATTTTTGTATTTGAATCCAGGA  50
      |||| ||||||||||| ||||||||||||||||  |||||||||||| ||
seq2  CCTC-GTATATACTCC-ACGACATAGATATTTTGTTATTTGAATCCA-GA  47

seq1  TATTCATTTAGCTCGTATAAATTTGTTAACTTTAGGATTTAGGCTGGATT  100
      || |||||||||||||||||| |||||||||||||||||   ||| || |
seq2  TA-TCATTTAGCTCGTATAAA-TTGTTAACTTTAGGATT--AGCT-GAAT  92

seq1  CTTAAAATAAATTTCATGACCATTTTGAAAAAAAATATTGATTAGACATA  150
      ||||||||||| |||||||||||||   ||||||||| ||||||||||||
seq2  CTTAAAATAAA-TTCATGACCATTT--GAAAAAAATA-TGATTAGACATA  138

seq1  CACATTTGGTATTGCAAAGATGCAAACTGTGAAAGCCTTCTCTTTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGGTATTGCAAAGATGCAAACTGTGAAAGCCTTCTCTTTATTCA  188

seq1  CAATTATTCTAATGAGACTGTAGAAATATATCATAAATAAGATCAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTCTAATGAGACTGTAGAAATATATCATAAATAAGATCAAGATC  238

seq1  TTTGGAAATCAAGTACTGACACTTAATGTGCTTAATAAAGTATCAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATCAAGTACTGACACTTAATGTGCTTAATAAAGTATCAAAATA  288

seq1  GTTTCAAAAATTTTATAATATTTAAAATTAAGTTGTAAGTCCTTTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAAATTTTATAATATTTAAAATTAAGTTGTAAGTCCTTTATTAA  338

seq1  AGATTAAATGAACATTTTCTTTAGAAATTAGGAAACTACATATGCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAATGAACATTTTCTTTAGAAATTAGGAAACTACATATGCCTTAT  388

seq1  ATAAATAAAGTAAATGACCAAACATGGGCTTCCTTTAATAAAACTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGTAAATGACCAAACATGGGCTTCCTTTAATAAAACTCTGCC  438

seq1  ATTATCAAACTTACATAGATACTAATCCCTCAATAATGACAAATACTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAACTTACATAGATACTAATCCCTCAATAATGACAAATACTATC  488

seq1  ACCAAACTGAAAGTTCTGTGCCTGCTGTAATGGTCTACTCTTATTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTGAAAGTTCTGTGCCTGCTGTAATGGTCTACTCTTATTCTGAA  538

seq1  TCAGTGCAATTACAATTTGGTCATAGACATCTAAAGTGTGGGGCATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAATTACAATTTGGTCATAGACATCTAAAGTGTGGGGCATTTTC  588

seq1  AGACAAACACCAGTAGAATGCTCTAAACCATGCAGTAGGTCCTTCTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACACCAGTAGAATGCTCTAAACCATGCAGTAGGTCCTTCTAGAC  638

seq1  TTCATTAACCTTCTGTACCAGCATGGCTGACACTGCATGGCTGAAGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAACCTTCTGTACCAGCATGGCTGACACTGCATGGCTGAAGGGTG  688

seq1  GGCAGAGTTCCCAGAAGCTCTGTCTAAATACCCTAGAGTGTAGCTCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTCCCAGAAGCTCTGTCTAAATACCCTAGAGTGTAGCTCAAGC  738

seq1  ATGTACAGGCTGCTACATAGGGAACCCAGAATGCTGAACAGCTGAGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGGCTGCTACATAGGGAACCCAGAATGCTGAACAGCTGAGAATC  788

seq1  AGTTTAATTGATTATAACCTGAAGTGTATTGCCGTATTTGATGAGGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATTGATTATAACCTGAAGTGTATTGCCGTATTTGATGAGGGCAA  838

seq1  GAGAAAAAATAAACCATGCACAGAGGAAGGTTTGCATCTGAATCCCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAATAAACCATGCACAGAGGAAGGTTTGCATCTGAATCCCTCTA  888

seq1  AAGGAATAAACTCTAGTCTATGTGTGCTATTACCCTTTCCAACCTAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAAACTCTAGTCTATGTGTGCTATTACCCTTTCCAACCTAGTAA  938

seq1  GCTGTGAAGTAGGTAAAAAGTGCAATCATGGTTTCTGTAAATAAAGAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAGTAGGTAAAAAGTGCAATCATGGTTTCTGTAAATAAAGAAGC  988

seq1  CGACTAAATTCACAGTGTGGCAGGTCTCTAGTGTAGCATTGAATAGAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAAATTCACAGTGTGGCAGGTCTCTAGTGTAGCATTGAATAGAAAA  1038

seq1  GAAAGCACTTTGTATGTGAAATACACTCTTGCTTCAGAGTGTGGTTGCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACTTTGTATGTGAAATACACTCTTGCTTCAGAGTGTGGTTGCCT  1088

seq1  GCTGAATTC  1109
      |||||||||
seq2  GCTGAATTC  1097


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