BAC Information

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BAC

Clone NameB6Ng01-292P13
Chromosome13 (Build37)
Map Location 6,169,867 - 6,300,301
singlet/doubletdoublet
Overlap geneLOC100039388
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292P13.bB6Ng01-292P13.g
ACCGA089470GA089471
length1,1161,150
definitionB6Ng01-292P13.b B6Ng01-292P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,169,867 - 6,170,979)(6,299,179 - 6,300,301)
sequence
ggaattctcaggctctgtgcataacattttgcagtcttttctcataaagc
acaaatttgatggtatagttattaagaatttccaggtgggaaaagcaaag
cattacattcaatgggggctttctttgtgatggaattctcttgcttgtgc
ctgcatactgtgtagccaaacccacttcaggcctctatcagtattcacgt
aaccatttgttctggcttccttcataagggagcctgcgatacagagaaag
tatgccttctacaaactggttaaatcacacagcactgcagcccagccttg
cactgttggattggggacgctattgatttccagcatagtagacattcaca
tacagttcagtttttcagttttctacattctagtatcagaggcatcagga
gcattcttacaagacctgtcggatgcttgctgacagtgcaacccaagctg
gcccaggactcagtctcctcacctattttgaattccaatgtaatgccttc
atgctgaatgactctatcctccttgctggagggagatgtttttgtgttgt
ttttcttgataaaatgaggaccaaaatagtagatgacaacaccacgccct
gcagtctgccagccacctataaaagccatatgttcattaagttaataaat
ttgacctaaatctgtttccatacctgtgtgataaaatttcgtctacagct
gcctctgtgtacagggaacatcaacctaacctagcctataagtaaactga
aacctgatttaacagtatgttcttgtagttgtcgggtttctccagagaag
cagaattagtggaataaatgtacaccatgttaggggtatgctaccctggc
tcatgcagtagaggttggatagtttagcaagtagccctgagcttacctga
gagcttaaaggaactgcttcccctctcacgaagctaagcgtctcaaggag
tccagtgtgatgctgaagtcctagcatcttcctagagcacttctgcttct
tcagtccatggaaagctgaagaaactagtgttgatatcaaggtaaatacg
gcagcagcagcagaactgatgccacacagcagccagaagcaaacacagct
tttgtcatggacccga

gaattcacaggtattctcttgcctttgcctccctgctgctgggattaaaa
gtgtgcacaaccatccctctttaaaacctattctttttaaaattagattt
attcattttatttttgattgttttgcctatatgtatgcatatgcactaca
tgattgtctggtgctctcaaaggtcagatgtaggcaatggatcccctgga
actgaagttacagacagctgtgagctgccaaatgggagctgagaatggaa
cctgggtcctctgcagaagcaagtagtgcctcataattcattcttaagta
aaaatatgattgataaatactttctaagatctgtataaatacagtttttg
caggatcaaacacaaaatttgggagaaactgggtgaaaaattcccaaata
gttaccatcctaccaaaccagtcaaatgatttgcttaaattgtggtagag
ctactaatttggaacatctactaatttaatagaatgtgggtgttaaaagc
tacttgttaattcaggaataactggaatattgttcacagctaagaagaaa
aataagttataaagtacaattttgttgttaagaatactgatgggggatgg
agagatggtccagtggttaagagcactggttgcttttccagaggactcag
gttcaatttccagcatccatgtggtagcgttacaaccttctataaaatcc
agtttcaggaagaccaatatcctcatttggcctccaagggcactgtacac
atttggtacataatacatgcaggtaaaacacataaaataaatataagtat
tttaaaataataaaaaaaagagaagttctctttgtaaatttgatttcttc
ttagaaacccaagaagaagacgctgttgttgtttttgttgctgttgtttt
gggttttgcataaatatgtcaatgttccccaacttattaaaaggcagagc
taaaagaggagaatcttttttctattcttacacagccctgggttcatcat
gtgccccagccatcagttgaaccagaaacacaagacatgttccaaatctt
gggtccacttaacgaatcaacaattccgagattccaagccttattatctc
agaatgcaatctgcctcattgctctcgtcagagaaattgagaagttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6169867_6170979
seq2: B6Ng01-292P13.b_52_1166

seq1  GAATTCTCAGGCTCTGTGCATAACATTTTGCAGTCTTTTCTCATAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGCTCTGTGCATAACATTTTGCAGTCTTTTCTCATAAAGCA  50

seq1  CAAATTTGATGGTATAGTTATTAAGAATTTCCAGGTGGGAAAAGCAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGATGGTATAGTTATTAAGAATTTCCAGGTGGGAAAAGCAAAGC  100

seq1  ATTACATTCAATGGGGGCTTTCTTTGTGATGGAATTCTCTTGCTTGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTCAATGGGGGCTTTCTTTGTGATGGAATTCTCTTGCTTGTGCC  150

seq1  TGCATACTGTGTAGCCAAACCCACTTCAGGCCTCTATCAGTATTCACGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTGTGTAGCCAAACCCACTTCAGGCCTCTATCAGTATTCACGTA  200

seq1  ACCATTTGTTCTGGCTTCCTTCATAAGGGAGCCTGCGATACAGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTTCTGGCTTCCTTCATAAGGGAGCCTGCGATACAGAGAAAGT  250

seq1  ATGCCTTCTACAAACTGGTTAAATCACACAGCACTGCAGCCCAGCCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTACAAACTGGTTAAATCACACAGCACTGCAGCCCAGCCTTGC  300

seq1  ACTGTTGGATTGGGGACGCTATTGATTTCCAGCATAGTAGACATTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGATTGGGGACGCTATTGATTTCCAGCATAGTAGACATTCACAT  350

seq1  ACAGTTCAGTTTTTCAGTTTTCTACATTCTAGTATCAGAGGCATCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAGTTTTTCAGTTTTCTACATTCTAGTATCAGAGGCATCAGGAG  400

seq1  CATTCTTACAAGACCTGTCGGATGCTTGCTGACAGTGCAACCCAAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACAAGACCTGTCGGATGCTTGCTGACAGTGCAACCCAAGCTGG  450

seq1  CCCAGGACTCAGTCTCCTCACCTATTTTGAATTCCAATGTAATGCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACTCAGTCTCCTCACCTATTTTGAATTCCAATGTAATGCCTTCA  500

seq1  TGCTGAATGACTCTATCCTCCTTGCTGGAGGGAGATGTTTTTGTGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGACTCTATCCTCCTTGCTGGAGGGAGATGTTTTTGTGTTGTT  550

seq1  TTTCTTGATAAAATGAGGACCAAAATAGTAGATGACAACACCACGCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATAAAATGAGGACCAAAATAGTAGATGACAACACCACGCCCTG  600

seq1  CAGTCTGCCAGCCACCTATAAAAGCCATATGTTCATTAAGTTAATAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCCAGCCACCTATAAAAGCCATATGTTCATTAAGTTAATAAATT  650

seq1  TGACCTAAATCTGTTTCCATACCTGTGTGATAAAATTTCGTCTACAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAATCTGTTTCCATACCTGTGTGATAAAATTTCGTCTACAGCTG  700

seq1  CCTCTGTGTACAGGGAACATCAACCTAACCTAGCCTATAAGTAAACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTACAGGGAACATCAACCTAACCTAGCCTATAAGTAAACTGAA  750

seq1  ACCTGATTTAACAGTATGTTCTTGTAGTTGTCGGGTTTCTCCAGAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTTAACAGTATGTTCTTGTAGTTGTCGGGTTTCTCCAGAGAAGC  800

seq1  AGAATTAGTGGAATAAATGTACACCATGTTAGGGGTATGCTACCCTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGTGGAATAAATGTACACCATGTTAGGGGTATGCTACCCTGGCT  850

seq1  CATGCAGTAGAGGTTGGATAGTTTAGCAAGTAGCCCTGAGCTTACCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTAGAGGTTGGATAGTTTAGCAAGTAGCCCTGAGCTTACCTGAG  900

seq1  AGCTT-AAGGAACTGCTTCCCCTCTCACGAAGCTAAGCGTCTC-AGGAGT  948
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCTTAAAGGAACTGCTTCCCCTCTCACGAAGCTAAGCGTCTCAAGGAGT  950

seq1  CCCAGTGTGATGCTGAAGTCCTAGCATCTTCCTAGAGCACTTCTGC-TCT  997
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -CCAGTGTGATGCTGAAGTCCTAGCATCTTCCTAGAGCACTTCTGCTTCT  999

seq1  TCAGTCCATGGAAAGCTGAAGAAACTAGGTGTTGATATC-AGGGAAATAC  1046
      ||||||||||||||||||||||||||| ||||||||||| ||| ||||||
seq2  TCAGTCCATGGAAAGCTGAAGAAACTA-GTGTTGATATCAAGGTAAATAC  1048

seq1  GGCAGCAGCAGCAGAACTGATG-CACACAGCAGCCAGAAGCAAACACAGC  1095
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCAGCAGCAGCAGAACTGATGCCACACAGCAGCCAGAAGCAAACACAGC  1098

seq1  TTTTGTCAATGGACCCGA  1113
      ||||||| ||||||||||
seq2  TTTTGTC-ATGGACCCGA  1115


seq1: chr13_6299179_6300301
seq2: B6Ng01-292P13.g_66_1215 (reverse)

seq1  CTCCAAC-TCTCA--TTCTCTGGAACGAGAGCAATGA-GCAGA-TGCATC  45
      ||||||| |||||  |||||||  ||||||||||||| ||||| ||||| 
seq2  CTCCAACTTCTCAATTTCTCTG--ACGAGAGCAATGAGGCAGATTGCATT  48

seq1  CTGAGATTATA--GCTGGGATTCTCGGGA-TGGTGA-TCGTT-AGT-GAC  89
      ||||||| |||  ||| ||| |||||| | || ||| ||||| ||| |||
seq2  CTGAGATAATAAGGCTTGGAATCTCGGAATTGTTGATTCGTTAAGTGGAC  98

seq1  C--AGATTTGG-ACATGTCTTTGTG-TTCTGGT--CACTGAT-GCTGGGC  132
      |  |||||||| ||||||| ||||| |||||||   |||||| |||||| 
seq2  CCAAGATTTGGAACATGTC-TTGTGTTTCTGGTTCAACTGATGGCTGGGG  147

seq1  AACATGATGA--CCA-GGCTGTGT-AGAATAG-AAAAAGATTCTCCTCTT  177
       |||||||||  ||| |||||||| ||||||| |||||||||||||||||
seq2  CACATGATGAACCCAGGGCTGTGTAAGAATAGAAAAAAGATTCTCCTCTT  197

seq1  TTAGCTCTG-CTTTTAATAAGTT-GGGAACATTGACATATTTATGCAAAA  225
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TTAGCTCTGCCTTTTAATAAGTTGGGGAACATTGACATATTTATGCAAAA  247

seq1  -CCAAAACAACAGCAAC-AAAACAACAACAGCGTCTTCTTCTTGGGTTTC  273
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCAAAACAACAGCAACAAAAACAACAACAGCGTCTTCTTCTTGGGTTTC  297

seq1  TAAGAAG-AATC-AATTTACAAAGAGAACTTCTC-TTTTTTTATTATTTT  320
      ||||||| |||| ||||||||||||||||||||| |||||||||||||||
seq2  TAAGAAGAAATCAAATTTACAAAGAGAACTTCTCTTTTTTTTATTATTTT  347

seq1  AAAATACTTATATTTATTTTATGTGTTTTACCTGCATGTATTATGTACCA  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTATATTTATTTTATGTGTTTTACCTGCATGTATTATGTACCA  397

seq1  AATGTGTACAGTGCCCTTGGAGGCCAAATGAGGATATTGGTCTTCCTGAA  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTACAGTGCCCTTGGAGGCCAAATGAGGATATTGGTCTTCCTGAA  447

seq1  ACTGGATTTTATAGAAGGTTGTAACGCTACCACATGGATGCTGGAAATTG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTTTATAGAAGGTTGTAACGCTACCACATGGATGCTGGAAATTG  497

seq1  AACCTGAGTCCTCTGGAAAAGCAACCAGTGCTCTTAACCACTGGACCATC  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGTCCTCTGGAAAAGCAACCAGTGCTCTTAACCACTGGACCATC  547

seq1  TCTCCATCCCCCATCAGTATTCTTAACAACAAAATTGTACTTTATAACTT  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCCCCCATCAGTATTCTTAACAACAAAATTGTACTTTATAACTT  597

seq1  ATTTTTCTTCTTAGCTGTGAACAATATTCCAGTTATTCCTGAATTAACAA  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCTTAGCTGTGAACAATATTCCAGTTATTCCTGAATTAACAA  647

seq1  GTAGCTTTTAACACCCACATTCTATTAAATTAGTAGATGTTCCAAATTAG  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTAACACCCACATTCTATTAAATTAGTAGATGTTCCAAATTAG  697

seq1  TAGCTCTACCACAATTTAAGCAAATCATTTGACTGGTTTGGTAGGATGGT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTACCACAATTTAAGCAAATCATTTGACTGGTTTGGTAGGATGGT  747

seq1  AACTATTTGGGAATTTTTCACCCAGTTTCTCCCAAATTTTGTGTTTGATC  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTGGGAATTTTTCACCCAGTTTCTCCCAAATTTTGTGTTTGATC  797

seq1  CTGCAAAAACTGTATTTATACAGATCTTAGAAAGTATTTATCAATCATAT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAACTGTATTTATACAGATCTTAGAAAGTATTTATCAATCATAT  847

seq1  TTTTACTTAAGAATGAATTATGAGGCACTACTTGCTTCTGCAGAGGACCC  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTAAGAATGAATTATGAGGCACTACTTGCTTCTGCAGAGGACCC  897

seq1  AGGTTCCATTCTCAGCTCCCATTTGGCAGCTCACAGCTGTCTGTAACTTC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCATTCTCAGCTCCCATTTGGCAGCTCACAGCTGTCTGTAACTTC  947

seq1  AGTTCCAGGGGATCCATTGCCTACATCTGACCTTTGAGAGCACCAGACAA  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGGGATCCATTGCCTACATCTGACCTTTGAGAGCACCAGACAA  997

seq1  TCATGTAGTGCATATGCATACATATAGGCAAAACAATCAAAAATAAAATG  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGTGCATATGCATACATATAGGCAAAACAATCAAAAATAAAATG  1047

seq1  AATAAATCTAATTTTAAAAAGAATAGGTTTTAAAGAGGGATGGTTGTGCA  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTAATTTTAAAAAGAATAGGTTTTAAAGAGGGATGGTTGTGCA  1097

seq1  CACTTTTAATCCCAGCAGCAGGGAGGCAAAGGCAAGAGAATACCTGTGAA  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAATCCCAGCAGCAGGGAGGCAAAGGCAAGAGAATACCTGTGAA  1147

seq1  TTC  1123
      |||
seq2  TTC  1150


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