BAC Information

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BAC

Clone NameB6Ng01-292P14
Chromosome13 (Build37)
Map Location 96,185,383 - 96,186,597
singlet/doubletsinglet
Overlap genenone
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1
Downstream geneCrhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292P14.bB6Ng01-292P14.g
ACCGA089472GA089473
length1,1881,148
definitionB6Ng01-292P14.b B6Ng01-292P14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagccagggttgcatagtaagaccctgactcaaacagta
acaacaacaaaaccaaccaaccaaaaccagacaaacaaaaaaccccaaac
caccaccaccaaaaatccaacctactcaaaacctttctttaaactctcca
ctctgatatgaacacagggacctaagggtttagctagaacttgtctagcc
tgggtctgagtctcagcactgcttaacattttttagaaattagaaaagta
aaacaagggaagattttaattattatgggattcaatttcaacaaaacaga
cacacaatctttaaattcttcctctgattactgtcaaactaagatttctg
agatgaattccagggacaattaatgctctcaaatggcatattttgtcatc
tgggactcgggagagcaaaggaggaaggctaaggtcagccaggtagtggc
cagcctggcttctggctgtgggtgctcaggcagagagtcccctttctgaa
acctcaatgtctctgtcttcagaacagggacactgaaccacaagatgtct
gtgcttccgtctgtgccgttctgcccatccctctgaagtgtggagataaa
catccgactcatcggagattctggaaggttcttgaattgagcatgaagga
caaacatgccaatcaattatgtagtgacccagcaaaaattgactgagaaa
atttgaaggaaagactttcacaatacccaagtagatgaatagcacagcag
gtcatttgttggctctccctgggtgtaacaagtgaaataggtgttaagtg
gtttggctccgagggtggcaggttagagatggtaggattttgagaattgg
agcttatgaaaggtgccactgggatgctgtcttggaagaaattaatggag
ttcttggggaacctcagtggttcccacaagaagattttaatagcctaaaa
caaaaagcacggagcctgtccctccttagctctgtcttagggtttactgc
tgtgaacagacacatgacaagacaactctatagcacagtttattgggctg
attacagcctcagaggttcagtcattatcatcaggtgggagcatgccaca
ttcaaggccgacttgtataggagagctagagttctacatcttgttctgaa
gcatggaagactgcttcagcagtaggacaggctatgaa
gaattcaagaatctcacagcatgcacaacctgttcggctgagttcacaac
aacatcatacgaacaaggtccagctgtggatgaggccccttggatgtact
tcctcagtctaataaaactaaagacaagtcatgtgtctcctaactccatg
aaggaacaatttcagttaaacagatatagaaatgcccattttaaagagag
aatgaaaagagagttgctagccattgtggtgggacatgtctgtaatgctg
gcccacaggaagactgcaagttctagaccatcctgggttacactgtaaga
ccttgtctaacaatggaaatagatttttaaaaaattgccaatcttaaagc
ctgcaacataatggcttcttccagaattccatggtagattataaggatgt
aataatttcagagcataaacctccaggctaggttggttacaccctctgga
tcttccttttttataactttaaaaaaataattatttaatatatgagtatt
ctgtagctatcttcagacaacaccagaagaggtcaccagatcctattaca
gatggttgtgagtcgccatgtggttgctgggaattgaactcaggacctct
ggaagagtagtcagtgctcttaaccactgagccatttctccaggccatgg
attgtcctgttttaaggaatctgcttccactggtacatttttgagaacta
ccttatcgctttgtgcccattccatccatttcagtttgatgatgtttttg
cagaaatgattttctcaaatatgttgtgggtttcccacaaatttcctttc
acataaaagctgtgaccactgctcattttgagttgaacctttatctacct
agattcctgctgagaggttgaagccagctccattaagcttccaaatgaca
tcatcactggacaggatctgtgagctttatccctggtgtcttggggaggg
gctttgcatatgcctaaactccctgcagtattaacaaatttgtacatgtc
atgggtgttttttcccactctgggccagatcatatgcattaatgcttcaa
tgtattttttttaaagtttttctcttttatggttgattgaacatgatctt
ctcacatagacttgaccgttctgagtttacttaggtagaccgaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96185383_96186597
seq2: B6Ng01-292P14.b_49_1236 (reverse)

seq1  TTCATACCCTTGTCCTAACTGCCTGGAAGCCAGTCTTCTCCCATTTGCCT  50
      |||||| || |||||| |||||   |||| |||||||   ||||    ||
seq2  TTCATAGCC-TGTCCT-ACTGC--TGAAG-CAGTCTT---CCAT---GCT  39

seq1  TCAGAACAAGATGTAGAACTCTTAGCTCTTCCTATACCAGGTCTGCCTGG  100
      ||||||||||||||||||||| |||||| ||||||| || ||| |||| |
seq2  TCAGAACAAGATGTAGAACTC-TAGCTC-TCCTATA-CAAGTCGGCCTTG  86

seq1  ATGTTGCCATGCTCCCACCTTGATGATAATGGACTGACCCTCTGAAGCTG  150
      |   || |||||||||||| |||||||||| |||||| ||||||| ||||
seq2  AATGTGGCATGCTCCCACC-TGATGATAAT-GACTGAACCTCTGAGGCTG  134

seq1  TAAATCAGCCCCAATTAAACCTTGTGCTTATAAGAGTTGTCTTGGTCATG  200
      | |||||||||  | |||||  ||||| ||| ||||||||||| ||||| 
seq2  T-AATCAGCCC--AATAAAC--TGTGC-TAT-AGAGTTGTCTT-GTCAT-  175

seq1  GTGTCTGTTCACAGCAGTAAAACCCTAAGACAGAGGCTAAGGAGGGACAG  250
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  GTGTCTGTTCACAGCAGT-AAACCCTAAGACAGA-GCTAAGGAGGGACAG  223

seq1  GCTCCGTGCTTTTTGTTTTA-GCTATTAAAATCCTTCTTGTGGGAACCAC  299
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GCTCCGTGCTTTTTGTTTTAGGCTATTAAAAT-CTTCTTGTGGGAACCAC  272

seq1  TGAGGTTCCCCAAGAACTCCCTTAATTTCTTCCCAAGACAGCATCCCAGT  349
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TGAGGTTCCCCAAGAACTCCATTAATTTCTT-CCAAGACAGCATCCCAGT  321

seq1  GGCACC-TTCATAAGCTCCAATTCTCAAAATCCTACCATCTCTAACCTGC  398
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTTCATAAGCTCCAATTCTCAAAATCCTACCATCTCTAACCTGC  371

seq1  CACCCTCGGAGCCAAACCACTTAACACCTATTTCACTTGTTACACCCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCGGAGCCAAACCACTTAACACCTATTTCACTTGTTACACCCAGG  421

seq1  GAGAGCCAACAAATGACCTGCTGTGCTATTCATCTACTTGGGTATTGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCAACAAATGACCTGCTGTGCTATTCATCTACTTGGGTATTGTGA  471

seq1  AAGTCTTTCCTTCAAATTTTCTCAGTCAATTTTTGCTGGGTCACTACATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTCCTTCAAATTTTCTCAGTCAATTTTTGCTGGGTCACTACATA  521

seq1  ATTGATTGGCATGTTTGTCCTTCATGCTCAATTCAAGAACCTTCCAGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGGCATGTTTGTCCTTCATGCTCAATTCAAGAACCTTCCAGAAT  571

seq1  CTCCGATGAGTCGGATGTTTATCTCCACACTTCAGAGGGATGGGCAGAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATGAGTCGGATGTTTATCTCCACACTTCAGAGGGATGGGCAGAAC  621

seq1  GGCACAGACGGAAGCACAGACATCTTGTGGTTCAGTGTCCCTGTTCTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGACGGAAGCACAGACATCTTGTGGTTCAGTGTCCCTGTTCTGAA  671

seq1  GACAGAGACATTGAGGTTTCAGAAAGGGGACTCTCTGCCTGAGCACCCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACATTGAGGTTTCAGAAAGGGGACTCTCTGCCTGAGCACCCAC  721

seq1  AGCCAGAAGCCAGGCTGGCCACTACCTGGCTGACCTTAGCCTTCCTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGCCAGGCTGGCCACTACCTGGCTGACCTTAGCCTTCCTCCTT  771

seq1  TGCTCTCCCGAGTCCCAGATGACAAAATATGCCATTTGAGAGCATTAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCGAGTCCCAGATGACAAAATATGCCATTTGAGAGCATTAATT  821

seq1  GTCCCTGGAATTCATCTCAGAAATCTTAGTTTGACAGTAATCAGAGGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGAATTCATCTCAGAAATCTTAGTTTGACAGTAATCAGAGGAAG  871

seq1  AATTTAAAGATTGTGTGTCTGTTTTGTTGAAATTGAATCCCATAATAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGATTGTGTGTCTGTTTTGTTGAAATTGAATCCCATAATAATT  921

seq1  AAAATCTTCCCTTGTTTTACTTTTCTAATTTCTAAAAAATGTTAAGCAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTCCCTTGTTTTACTTTTCTAATTTCTAAAAAATGTTAAGCAGT  971

seq1  GCTGAGACTCAGACCCAGGCTAGACAAGTTCTAGCTAAACCCTTAGGTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTCAGACCCAGGCTAGACAAGTTCTAGCTAAACCCTTAGGTCC  1021

seq1  CTGTGTTCATATCAGAGTGGAGAGTTTAAAGAAAGGTTTTGAGTAGGTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCATATCAGAGTGGAGAGTTTAAAGAAAGGTTTTGAGTAGGTTG  1071

seq1  GATTTTTGGTGGTGGTGGTTTGGGGTTTTTTGTTTGTCTGGTTTTGGTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGGTGGTGGTGGTTTGGGGTTTTTTGTTTGTCTGGTTTTGGTTG  1121

seq1  GTTGGTTTTGTTGTTGTTACTGTTTGAGTCAGGGTCTTACTATGCAACCC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTGTTGTTGTTACTGTTTGAGTCAGGGTCTTACTATGCAACCC  1171

seq1  TGGCTGGCCTGGAATTC  1215
      |||||||||||||||||
seq2  TGGCTGGCCTGGAATTC  1188