BAC Information

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BAC

Clone NameB6Ng01-294E19
Chromosome1 (Build37)13 (Build37)
Map Location 118,311,459 - 118,311,83367,592,589 - 67,593,770
singlet/doubletsingletsinglet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E19.bB6Ng01-294E19.g
ACCGA090463GA090464
length1,0111,162
definitionB6Ng01-294E19.b B6Ng01-294E19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,311,459 - 118,311,833)(67,592,589 - 67,593,770)
sequence
gaattcaatcttaaaaggcacttataataaagagagcacatggatccatc
cactagactaaggcgggaatggaaaatttagagagcacgccaaactccag
gagcgagtttccatgaaactcttttgcctcgagagtagctttcaagcctc
tcggcttatcaagctgactcgaccagagcgcgtggcaaaagggtccctgc
ctagtcctgtttcctaccccttcttatcctgtttttgttcttaacctttg
gcccatgtatccttaattgtagagtagaagttaatatacttagacaacaa
tatcagtaactgtaacaaaagtgagatatcatttcaggattgaaatgtac
ctgggaaaaggggggtgggaatgtaatatccaaaatgaattcaagaccac
ccaataccttcccccttcgaaaagaactttccaaactgtactagcaggca
aagtgcagatccaaataaggaagctgagtaaacaaatgtaaaaacatagt
tttagcggtcaaaattattaagcctgcagctaccaaaataatattagctg
ttctcaaagaaatagccataacaagattagcaattctactgtctcctccc
ttctgacatgggttaaatgttatccatatgctctgctgacacagataagc
acctgcgcccttcagaattgctgttaccttgatctgcacgtacaatttgc
tgatgtttatactgtccaattgtgtgtaactgcaccaatttcccctatcc
cccgacttttttcctatataaacacctaacttttgagcctcagggtcgac
tcctctgtttcctgctagagatatatgtcagctgaagctctgtcattaaa
ctgccttgtgtgtttgcatcaggatggtctctcgtgattccttgggtgca
cacgaaatcttgggacttgagtgggggtctcctcactgggatctttcaag
aaaatgccttacacctggatctcatggaggcatttcctctactgaagctc
tttctctgtga

gaattctttgatgtaccttaagcaatgaagggtaggaaaattctttggcg
cattcttcacacttgtatggttttttcccagtatggtttttctggtgtct
ataatatgttgagcgagtactgaaggccttgccacattcttcacatttgt
acggtttttctccagtatggattctcttgtgttcagaaaggtttgaatga
ctattaaaagccttaccacattcttcacatttgtagggtttttctcccgt
atgaactctctggtgtgtagaaagttttgagcgaatacgaaaggccttac
cacattcttcacatttgtagggtttttctccagtatgtattctcttgtgt
tcagaaaggtttgaacgattattaaaggccttaccacattcttcacactt
gaaggctttctcccctgtacgaattctctggtgctgagtaagcagtgact
tgcaaaaaaaggccttgctgaaatctttacatttgttgacggtttttcct
gttgaccaaaagttgatttatgaacaaaagcttagcacattctttatatt
tttaatgtttccctttaaatggagacatatactcctacttacattcttat
tgataaatcagaaagaacacaacattcctacccctgtattcatttagcat
gattcagaaaatatagtaggaggaaacaatctaagcttctactgaaataa
aagcttggtcaaattgattatagaaataagcccaccaggtagtagtggtg
catgcctttaatcctggcactctggaggcagagagaagtgggtatctgtg
agttccaggccagcctggtgtacagattgagttccaagacagtcaaggta
caaagagaaacctatctcaaacaaacaaataaacaacaaaagaaaggcac
actattccaagttaagtagccaaataagtagtcattatctatgacaaaag
aattatcctaagggtatatgtatcttagtacacatagatatatacatgga
cacactggcattatcacttgaaaacagaagatcagtgtgactgaatgaga
ctgagcaataagaaaacacattttatcttacgtattgaaattagatctaa
gatgaatgaaaaatgtgcatcataagatttctaacctatttaattataca
tcccattggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118311459_118311833
seq2: B6Ng01-294E19.b_262_630

seq1  CCCCTTCTTATCTTGTTTTTGTTTTTAACCTTTGGCCCGTGTATCCTCAA  50
      |||||||||||| |||||||||| |||||||||||||| |||||||| ||
seq2  CCCCTTCTTATCCTGTTTTTGTTCTTAACCTTTGGCCCATGTATCCTTAA  50

seq1  CTGTTAAAGTATAGTACAAGTTTTGATGCTCAGACAACAATATCAGTAGC  100
       |      ||| |||| |||||   || || ||||||||||||||||| |
seq2  TT------GTAGAGTAGAAGTTAATATACTTAGACAACAATATCAGTAAC  94

seq1  TGTAAC-AAAGTGAGACATCATTTCAGGATTGAAATGTACCAGGGAAAA-  148
      |||||| ||||||||| |||||||||||||||||||||||| ||||||| 
seq2  TGTAACAAAAGTGAGATATCATTTCAGGATTGAAATGTACCTGGGAAAAG  144

seq1  AAAGGAGGGAATGTAATATCCAAAATGAATTCAAGACCACCCAGTACCTC  198
         || ||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GGGGGTGGGAATGTAATATCCAAAATGAATTCAAGACCACCCAATACCTT  194

seq1  CCCCCTTCGAAAAGGACATTCCTAACTGTACTAGCTGGCCAAGTGCAGAG  248
      |||||||||||||| || |||| |||||||||||| ||| ||||||||| 
seq2  CCCCCTTCGAAAAGAACTTTCCAAACTGTACTAGCAGGCAAAGTGCAGAT  244

seq1  CCAGATAAGGAAGCTGGCTGACTAAACAAATGTAGAAAC--TGTTTTAGC  296
      ||| ||||||||    ||||| |||||||||||| ||||   ||||||||
seq2  CCAAATAAGGAA----GCTGAGTAAACAAATGTAAAAACATAGTTTTAGC  290

seq1  GGTCAAAATGACTAAGCCTGCAGCTACCAAAACAATATTAGCTGTCCTCA  346
      ||||||||| | |||||||||||||||||||| |||||||||||| ||||
seq2  GGTCAAAATTATTAAGCCTGCAGCTACCAAAATAATATTAGCTGTTCTCA  340

seq1  GAGAAATAATCATAACAAGATTAGCAATT  375
       |||||||  |||||||||||||||||||
seq2  AAGAAATAGCCATAACAAGATTAGCAATT  369


seq1: chr13_67592589_67593770
seq2: B6Ng01-294E19.g_64_1225

seq1  GAATTCTTTGATGTACCTTAAGCAATGAAGGGTAGGAAAATTCTTTGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATGTACCTTAAGCAATGAAGGGTAGGAAAATTCTTTGGCG  50

seq1  CATTCTTCACACTTGTATGGTTTTTTCCCAGTATGGTTTTTCTGGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCACACTTGTATGGTTTTTTCCCAGTATGGTTTTTCTGGTGTCT  100

seq1  ATAATATGTTGAGCGAGTACTGAAGGCCTTGCCACATTCTTCACATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGTTGAGCGAGTACTGAAGGCCTTGCCACATTCTTCACATTTGT  150

seq1  ACGGTTTTTCTCCAGTATGGATTCTCTTGTGTTCAGAAAGGTTTGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTTTCTCCAGTATGGATTCTCTTGTGTTCAGAAAGGTTTGAATGA  200

seq1  CTATTAAAAGCCTTACCACATTCTTCACATTTGTAGGGTTTTTCTCCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAGCCTTACCACATTCTTCACATTTGTAGGGTTTTTCTCCCGT  250

seq1  ATGAACTCTCTGGTGTGTAGAAAGTTTTGAGCGAATACGAAAGGCCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTCTGGTGTGTAGAAAGTTTTGAGCGAATACGAAAGGCCTTAC  300

seq1  CACATTCTTCACATTTGTAGGGTTTTTCTCCAGTATGTATTCTCTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTCACATTTGTAGGGTTTTTCTCCAGTATGTATTCTCTTGTGT  350

seq1  TCAGAAAGGTTTGAACGATTATTAAAGGCCTTACCACATTCTTCACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGTTTGAACGATTATTAAAGGCCTTACCACATTCTTCACACTT  400

seq1  GAAGGCTTTCTCCCCTGTACGAATTCTCTGGTGCTGAGTAAGCAGTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTTCTCCCCTGTACGAATTCTCTGGTGCTGAGTAAGCAGTGACT  450

seq1  TGCAAAAAAAGGCCTTGCTGAAATCTTTACATTTGTTGACGGTTTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAAAGGCCTTGCTGAAATCTTTACATTTGTTGACGGTTTTTCCT  500

seq1  GTTGACCAAAAGTTGATTTATGAACAAAAGCTTAGCACATTCTTTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAAAAGTTGATTTATGAACAAAAGCTTAGCACATTCTTTATATT  550

seq1  TTTAATGTTTCCCTTTAAATGGAGACATATACTCCTACTTACATTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTTCCCTTTAAATGGAGACATATACTCCTACTTACATTCTTAT  600

seq1  TGATAAATCAGAAAGAACACAACATTCCTACCCCTGTATTCATTTAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATCAGAAAGAACACAACATTCCTACCCCTGTATTCATTTAGCAT  650

seq1  GATTCAGAAAATATAGTAGGAGGAAACAATCTAAGCTTCTACTGAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAAATATAGTAGGAGGAAACAATCTAAGCTTCTACTGAAATAA  700

seq1  AAGCTTGGTCAAATTGATTATAGAAATAAGGCCCACCAGGTAGTAGTGGT  750
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGCTTGGTCAAATTGATTATAGAAATAA-GCCCACCAGGTAGTAGTGGT  749

seq1  GCATGCCTTTAATCCTGGCACTCTGGAGGCAGAGAGAAGTGGGTATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTTAATCCTGGCACTCTGGAGGCAGAGAGAAGTGGGTATCTGT  799

seq1  GAGTTCCAGGCCAGCCTGGTGTACAGATTGAGTTCCAAGACAGTCAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGTTCCAGGCCAGCCTGGTGTACAGATTGAGTTCCAAGACAGTCAAGG-  848

seq1  TACAAAGAGAAACCCTATCTCAAACAAACAAATAAACAAACAAAAAGAAA  900
      |||||||||||| ||||||||||||||||||||||||||   ||||||||
seq2  TACAAAGAGAAA-CCTATCTCAAACAAACAAATAAACAA--CAAAAGAAA  895

seq1  GGCACACTATTCCAAGTTAAGTAGCCAAATAAGTAGTCATTATCTATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTATTCCAAGTTAAGTAGCCAAATAAGTAGTCATTATCTATGAC  945

seq1  AAAAGAA-TATCCTAAGGGTATTATGTATCCTTAGTACACATAGATATTA  999
      ||||||| ||||||||||||| ||||||| ||||||||||||||||| ||
seq2  AAAAGAATTATCCTAAGGGTA-TATGTAT-CTTAGTACACATAGATA-TA  992

seq1  TACATGGACACACCTGGCATTATCAACTTGGAAAACAGAAGATCAGTGGT  1049
      |||||||||||| ||||||||||| |||| ||||||||||||||||| ||
seq2  TACATGGACACA-CTGGCATTATC-ACTT-GAAAACAGAAGATCAGT-GT  1038

seq1  GACTGAGTGAGACTGAAGCAATACAGAAACACCATTTTTATCCTACGTAT  1099
      |||||| |||||||| |||||||   ||||||   ||||||| |||||||
seq2  GACTGAATGAGACTG-AGCAATAAGAAAACAC--ATTTTATCTTACGTAT  1085

seq1  GAATTTTAGAATTATAGGTATGAATG-AAAATGTGCATCATAAATATTTC  1148
        |  |||||  | || | ||||||| |||||||||||||| || |||||
seq2  TGAAATTAGA--TCTAAG-ATGAATGAAAAATGTGCATCAT-AAGATTTC  1131

seq1  TACACTAATTTTAAATAATACATCCCATGGGTTT  1182
      ||  |||   || ||| ||||||||||| |||||
seq2  TAACCTA---TTTAATTATACATCCCATTGGTTT  1162


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