BAC Information

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BAC

Clone NameB6Ng01-294N02
Chromosome13 (Build37)
Map Location 55,172,693 - 55,173,288
singlet/doubletsinglet
Overlap geneUimc1
Upstream geneSfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3
Downstream geneLOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294N02.bB6Ng01-294N02.g
ACCGA090847GA090848
length172721
definitionB6Ng01-294N02.b B6Ng01-294N02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aggacctttggaagagctgaacttctgacccatctcttcagcccattgtt
tatttgttttcttctttgtatttttgttgctgttttatattattttggtt
gttgtgttgggatttgtttgttttgtgtgtttgtgtatgtgtgtgtgtgt
gtctgtgtgtgtgtgtgtgttt
gaattctcagctgaggaaacttgaacctaaagaaatgttcaacatcccta
gtcatcagggaaatgcaaatcaaaaagacccagagattcaacctcacacc
agccagaatggctaagatcaaaaactcaggagacagaatgctagtgggga
tgtggagaaagaggaacagtcttccatttttagtaggattgcaagctggt
acaaccactgtggaaatcaatctggcagttcctcagaaaattggacatag
tacttcttgaagaaccagctagaccactcctgggtatatacccaaaagat
gttcccacatataccaaggacacatgctccactatgttcatagaagccct
atttataatagtcagaagctggaaagaacccagatgtccttcaacagaga
aatggatacaaaaattgtggtacatttacacaatgcagtaccactcagct
attaaaaacaatgacttcacgaaattcacaggcaaatggatggatctaga
aaatatcatcctcagtaacaaaagaacacgcatggtgtgtactcactaat
aagtggatattaggcaaagagtgtggaatatccagatataactcatgggc
cacatgaagctcaagaagaagaaaaaccaaagagttgatgcttcagtctt
ccttagaagggggaacaatataatcaagggtgggaggaacttgggagaaa
gtaaggagggagtggggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55172693_55173288
seq2: B6Ng01-294N02.b_62_221 (reverse)

seq1  AAACACACACACACACACACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||| ||||||||||||||| ||||| ||||||| 
seq2  AAACACACACACACACACAGACACACACACACACATACACAAACACACA-  49

seq1  ACACACACACA-CACACCTCTTTCTAGAAACCCTTGCATTAAAATACAGC  99
      | ||| ||| | | || | |     |  ||||     | ||| ||| | |
seq2  AAACAAACAAATCCCAACAC-----AACAACC---AAAATAATATAAAAC  91

seq1  AACAACAAATAATACACCCAACTCTTTAAATTAAGTGATGAATTTTTTCT  149
      | ||||||| ||||||                ||  || ||         
seq2  AGCAACAAA-AATACA----------------AA--GAAGA---------  113

seq1  TTGAAACAAAACAGGAAACACTGACACCTAGCGTCCACATAACAGAATTT  199
         |||||||     ||||| ||      || |   |     ||||| ||
seq2  ---AAACAAA----TAAACAATGGGCTGAAGAG---ATGGGTCAGAAGTT  153

seq1  C-GTTGACTTAGGAAACGAGAGAAGTACCAACCCCAGGTCAAGCAACTGA  248
      | | |  ||                                         
seq2  CAGCT--CT-----------------------------------------  160

seq1  CAGAACTGAGTCCCACAGCTGTCTTCTGACCTTCACTCATGTGTTGTTAC  298
                                                        
seq2  --------------------------------------------------  160

seq1  AACCTCTCCTCCCCCCAATACATACATAAATAAATGTCTTTAAAAGTGTG  348
                                                        
seq2  --------------------------------------------------  160

seq1  TTGCTCTTTTTTTAAGTAAAATTCAAAATAACAAAGTCAATGTCAACCTC  398
                                                        
seq2  --------------------------------------------------  160

seq1  TGGCCTCCAATCTCTAACACGCATACATATTATGTGTATACACACACACA  448
                                                        
seq2  --------------------------------------------------  160

seq1  CACCAAAAAAACAAAACAAAACAAAAGCATTGCACTAGACATTTTATATA  498
                                                        
seq2  --------------------------------------------------  160

seq1  AACACACTTTCATCCTTACAACTACATAAAGATGGGGCTGAAGAGATGGC  548
                                                        
seq2  --------------------------------------------------  160

seq1  TCAAAATTAAGAACACTTGCTGTTCTTGCAGAAGACCGATTCAGCTCT  596
                                                      
seq2  ------------------------------------------------  160