BAC Information

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BAC

Clone NameB6Ng01-294N07
Chromosome13 (Build37)
Map Location 82,759,044 - 82,886,816
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018, Mef2c, LOC100043111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294N07.bB6Ng01-294N07.g
ACCGA090857GA090858
length1,1471,089
definitionB6Ng01-294N07.b B6Ng01-294N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,885,671 - 82,886,816)(82,759,044 - 82,760,141)
sequence
gaattctagttttaatcagacataattcagtctaagataaatctaatact
tatattctgcactactagactcatgttaccttttgagtatagcttaataa
atctaggcatgacctcccatagagagcaccaggggagaatctaaggacct
atgccaaagatagttgaaagggtgatttctcttaattaagaaataaataa
aacatagtgtccagttagtgattttccccccttttttgctcttattacta
tgaaaccagaaataaagtccatggctttaacccaggaagtatttttagtg
acagccataggaaactggcttggccaaagggaccatttattagtgttccc
actgagatggggagtgtccacttctgaatcgcttcccagctctcggactc
tttcagatattccacaattttaacgtccagagagttttgatggctccctg
tggttttctagttccaccaggatattagaatattaagacactctgcagca
cactgagattgcttctgtctttctaaaagttatctgggtgcaacacgcac
atgttcactctgagaatagaaagagttcactaaccaaaagtgtgtgcatg
aaacatcagtatttagacacaacgcatttgaaatggttcagcattcacgt
ttctacaatttttcaggaaataaaggaattatttccaattatcaagcaac
tctactaccaagaaaagtagagcttacaccaagggcatcccacgtggtaa
gactggtgctccagcattgtgacgtcatcatctttacaacactagagact
acctgtgcttcctatactgattccttcacagttctctaaacagaaaataa
actgtgctctatatgatttgatatctgtttgtacacagtccattttcatt
aactacagattgatgcttacaaaagaatataacctgatcaatgacctaag
gaaactattgaggcatataattgcccctttcctcctttattcttaagata
atttacaaaccatgcctcttaattactgaatttgaattcttaattaagaa
atgtccttcatgcattatatctatgaaacaaacagttaacattcttatcc
aaatctcatttctttgcagttctctattctaagagtttataggaaca
gaattcactccaattattgcttctatggttcatgaaactttaaaaatctg
tgctgtatttctaattcctgaaacaaaaacctctcttctttctaggttct
gatttcagaagacatttggatagtagttaattggtaacaatctgtcagtg
ctgaagggaagcagcacagggctgagtttccatgagcgctgagtagtgct
gtgcctcacacataatgcttaagtcagtagcttaaccccccagaatattt
aacgcaggataaattgccatcacagcatctgaagcatttatattactctg
tatttggattcaatttgatgagcagcaacacatctctcccaataatagta
attgaaaaattcgctctcaatgtgatcctgccccttcctaagtcactaat
aatatctgccacaaaatttaatattttttggaacatcaggcattggatta
taaaagccatctacatttgtaaatgactcaaaaatagcaattgacccact
ttaaaaaaacattattctatcatcatgataataaaattgtttttaataaa
ctaaataatatttctcttacactattgtaagtatattgttttactatcct
ggagaataaaaataaaacaaaacaaagagagtagccctctagaaatattg
actcctctctggctctttaaatgttgagctaagtatatgagttattaagg
tgaaataagttgctttcagcagttgttaatatatcattaataatcataca
tgcaataaataacaacatatgagttatttcctaagagatatatgactgca
aattgcagtaacaaatcacagcgtgagtaaagcatgctcattactctcat
gtgtacagaagctcttttaacaactgtattctttatggtgaagctcaccc
taattagccttgcagattcctttgggaatgtgtgcagaatatttgacatt
gtgatgttcaagctacagtggggggagagtacaccatttcttcagcagaa
agctcagcacagtctggcttcctatttagtcccttgtttaatatatgcat
gcagtgaaagtaaatagcctttcaacagttagataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82885671_82886816
seq2: B6Ng01-294N07.b_46_1192 (reverse)

seq1  TGTT-CTATAAACTCCTTAGAATTAGAGAACTGCCAAAGAAATGAGATTT  49
      |||| ||||||||| ||||||| |||||||||| ||||||||||||||||
seq2  TGTTCCTATAAACT-CTTAGAA-TAGAGAACTG-CAAAGAAATGAGATTT  47

seq1  GGATA--GATGTT-ACTGTTTGTTTCATTAGATATAATGCATTGAAGGAC  96
      |||||   ||||| ||||||||||||| ||||||||||||| ||||||||
seq2  GGATAAGAATGTTAACTGTTTGTTTCA-TAGATATAATGCA-TGAAGGAC  95

seq1  ATTTC-TAATTAAGAATTCAAA-TCAGTAATTAAGAGGCATGGTTTGTAA  144
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTCTTAATTAAGAATTCAAATTCAGTAATTAAGAGGCATGGTTTGTAA  145

seq1  ATTATCTTAAGAATAAAGGAGGAAAGGGGCAATTATATGCCTCAATAGTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTAAGAATAAAGGAGGAAAGGGGCAATTATATGCCTCAATAGTT  195

seq1  TCCTTAGGTCATTGATCAGGTTATATTCTTTTGTAAGCATCAATCTGTAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGGTCATTGATCAGGTTATATTCTTTTGTAAGCATCAATCTGTAG  245

seq1  TTAATGAAAATGGACTGTGTACAAACAGATATCAAATCATATAGAGCACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAAATGGACTGTGTACAAACAGATATCAAATCATATAGAGCACA  295

seq1  GTTTATTTTCTGTTTAGAGAACTGTGAAGGAATCAGTATAGGAAGCACAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTCTGTTTAGAGAACTGTGAAGGAATCAGTATAGGAAGCACAG  345

seq1  GTAGTCTCTAGTGTTGTAAAGATGATGACGTCACAATGCTGGAGCACCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCTAGTGTTGTAAAGATGATGACGTCACAATGCTGGAGCACCAG  395

seq1  TCTTACCACGTGGGATGCCCTTGGTGTAAGCTCTACTTTTCTTGGTAGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCACGTGGGATGCCCTTGGTGTAAGCTCTACTTTTCTTGGTAGTA  445

seq1  GAGTTGCTTGATAATTGGAAATAATTCCTTTATTTCCTGAAAAATTGTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTTGATAATTGGAAATAATTCCTTTATTTCCTGAAAAATTGTAG  495

seq1  AAACGTGAATGCTGAACCATTTCAAATGCGTTGTGTCTAAATACTGATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGAATGCTGAACCATTTCAAATGCGTTGTGTCTAAATACTGATGT  545

seq1  TTCATGCACACACTTTTGGTTAGTGAACTCTTTCTATTCTCAGAGTGAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCACACACTTTTGGTTAGTGAACTCTTTCTATTCTCAGAGTGAAC  595

seq1  ATGTGCGTGTTGCACCCAGATAACTTTTAGAAAGACAGAAGCAATCTCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTGTTGCACCCAGATAACTTTTAGAAAGACAGAAGCAATCTCAG  645

seq1  TGTGCTGCAGAGTGTCTTAATATTCTAATATCCTGGTGGAACTAGAAAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCAGAGTGTCTTAATATTCTAATATCCTGGTGGAACTAGAAAAC  695

seq1  CACAGGGAGCCATCAAAACTCTCTGGACGTTAAAATTGTGGAATATCTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGCCATCAAAACTCTCTGGACGTTAAAATTGTGGAATATCTGA  745

seq1  AAGAGTCCGAGAGCTGGGAAGCGATTCAGAAGTGGACACTCCCCATCTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCCGAGAGCTGGGAAGCGATTCAGAAGTGGACACTCCCCATCTCA  795

seq1  GTGGGAACACTAATAAATGGTCCCTTTGGCCAAGCCAGTTTCCTATGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAACACTAATAAATGGTCCCTTTGGCCAAGCCAGTTTCCTATGGCT  845

seq1  GTCACTAAAAATACTTCCTGGGTTAAAGCCATGGACTTTATTTCTGGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAAAAATACTTCCTGGGTTAAAGCCATGGACTTTATTTCTGGTTT  895

seq1  CATAGTAATAAGAGCAAAAAAGGGGGGAAAATCACTAACTGGACACTATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAATAAGAGCAAAAAAGGGGGGAAAATCACTAACTGGACACTATG  945

seq1  TTTTATTTATTTCTTAATTAAGAGAAATCACCCTTTCAACTATCTTTGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTTCTTAATTAAGAGAAATCACCCTTTCAACTATCTTTGGC  995

seq1  ATAGGTCCTTAGATTCTCCCCTGGTGCTCTCTATGGGAGGTCATGCCTAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCCTTAGATTCTCCCCTGGTGCTCTCTATGGGAGGTCATGCCTAG  1045

seq1  ATTTATTAAGCTATACTCAAAAGGTAACATGAGTCTAGTAGTGCAGAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAGCTATACTCAAAAGGTAACATGAGTCTAGTAGTGCAGAATA  1095

seq1  TAAGTATTAGATTTATCTTAGACTGAATTATGTCTGATTAAAACTAGAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTAGATTTATCTTAGACTGAATTATGTCTGATTAAAACTAGAAT  1145

seq1  TC  1146
      ||
seq2  TC  1147

seq1: chr13_82759044_82760141
seq2: B6Ng01-294N07.g_66_1154

seq1  GAATTCACTCCAATTATTGCTTCTATGGTTCATGAAACTTTAAAAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAATTATTGCTTCTATGGTTCATGAAACTTTAAAAATCTG  50

seq1  TGCTGTATTTCTAATTCCTGAAACAAAAACCTCTCTTCTTTCTAGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATTTCTAATTCCTGAAACAAAAACCTCTCTTCTTTCTAGGTTCT  100

seq1  GATTTCAGAAGACATTTGGATAGTAGTTAATTGGTAACAATCTGTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGAAGACATTTGGATAGTAGTTAATTGGTAACAATCTGTCAGTG  150

seq1  CTGAAGGGAAGCAGCACAGGGCTGAGTTTCCATGAGCGCTGAGTAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGAAGCAGCACAGGGCTGAGTTTCCATGAGCGCTGAGTAGTGCT  200

seq1  GTGCCTCACACATAATGCTTAAGTCAGTAGCTTAACCCCCCAGAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCACACATAATGCTTAAGTCAGTAGCTTAACCCCCCAGAATATTT  250

seq1  AACGCAGGATAAATTGCCATCACAGCATCTGAAGCATTTATATTACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGGATAAATTGCCATCACAGCATCTGAAGCATTTATATTACTCTG  300

seq1  TATTTGGATTCAATTTGATGAGCAGCAACACATCTCTCCCAATAATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGATTCAATTTGATGAGCAGCAACACATCTCTCCCAATAATAGTA  350

seq1  ATTGAAAAATTCGCTCTCAATGTGATCCTGCCCCTTCCTAAGTCACTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAATTCGCTCTCAATGTGATCCTGCCCCTTCCTAAGTCACTAAT  400

seq1  AATATCTGCCACAAAATTTAATATTTTTTGGAACATCAGGCATTGGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGCCACAAAATTTAATATTTTTTGGAACATCAGGCATTGGATTA  450

seq1  TAAAAGCCATCTACATTTGTAAATGACTCAAAAATAGCAATTGACCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCATCTACATTTGTAAATGACTCAAAAATAGCAATTGACCCACT  500

seq1  TTAAAAAAACATTATTCTATCATCATGATAATAAAATTGTTTTTAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAACATTATTCTATCATCATGATAATAAAATTGTTTTTAATAAA  550

seq1  CTAAATAATATTTCTCTTACACTATTGTAAGTATATTGTTTTACTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATATTTCTCTTACACTATTGTAAGTATATTGTTTTACTATCCT  600

seq1  GGAGAATAAAAATAAAACAAAACAAAGAGAGTAGCCCTCTAGAAATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATAAAAATAAAACAAAACAAAGAGAGTAGCCCTCTAGAAATATTG  650

seq1  ACTCCTCTCTGGCTCTTTAAATGTTGAGCTAAGTATATGAGTTATTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCTCTGGCTCTTTAAATGTTGAGCTAAGTATATGAGTTATTAAGG  700

seq1  TGAAATAAGTTGCTTTCAGCAGTTGTTAATATATCATTAATAATCATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGTTGCTTTCAGCAGTTGTTAATATATCATTAATAATCATACA  750

seq1  TGCAATAAATAACAACATATGAGTTATTTCCTAAGAGATATATGACTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAAATAACAACATATGAGTTATTTCCTAAGAGATATATGACTGCA  800

seq1  AATTGCAGTAACAAATCACAGCGTGAGTAAAGCATGCTCATTACTCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGTAACAAATCACAGCGTGAGTAAAGCATGCTCATTACTCTCAT  850

seq1  GTGTACAGAAGCTCTTTTAACAACTGTATTCTTTATGGTGAAGCTCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGAAGCTCTTTTAACAACTGTATTCTTTATGGTGAAGCTCACCC  900

seq1  TAATTAGCCTTGCAGATTCCTTTGGGAATGTGTGCAGAATATTTGACATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCCTTGCAGATTCCTTTGGGAATGTGTGCAGAATATTTGACATT  950

seq1  GTGATGTTCAAGCTACAGTGGGGGAGGAGTACACCATTTCTTCAGCAAGA  1000
      ||||||||||||||||||||||||  |||||||||||||||||||| |||
seq2  GTGATGTTCAAGCTACAGTGGGGGGAGAGTACACCATTTCTTCAGC-AGA  999

seq1  AAGCTCCAGGCCACAAGTCTGGCTTCCTATTTAGTCCCTTGTTTTAATAT  1050
      ||||| |||  ||| |||||||||||||||||||||||||| ||||||||
seq2  AAGCT-CAG--CAC-AGTCTGGCTTCCTATTTAGTCCCTTG-TTTAATAT  1044

seq1  ATGCATTGCAGTGAAAGTAAATAGCCTTTTCAAACAAGTAGATAATAA  1098
      ||||| |||||||||||||||||||||||   ||||  ||||||||||
seq2  ATGCA-TGCAGTGAAAGTAAATAGCCTTT--CAACAGTTAGATAATAA  1089