BAC Information

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BAC

Clone NameB6Ng01-294O01
Chromosome13 (Build37)
Map Location 5,586,209 - 5,704,786
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294O01.bB6Ng01-294O01.g
ACCGA090891GA090892
length8551,115
definitionB6Ng01-294O01.b B6Ng01-294O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,703,933 - 5,704,786)(5,586,209 - 5,587,305)
sequence
gaattctatggtagttggtgtgattttaaaggtgtttgcaaaaccacaag
acctctcatttcatcaagggaaagttccattaatgaattcattgttgaat
gtttgcttggactaatctgttgatgatttcacttatccaagcactctgag
gtggtagagcacagttatgggaaatgggtcactggaaggatacctttgaa
gggtcaatattgtatctgacttctttctgtctctttgtatcctgtctgcc
ctttgtgtcaccctgatgtcctgtctcactgagtagaggttcatgtacaa
tgaggccagatgattatgcagatgactatgaactaaaatctatgaggtag
taagccaaaataattctctttcactttctctttcctccaggtctattgct
gagtagagtcactatgaccaaggaaactcttattaaaaaaacaagtagtt
ggaggcctgcttacagtttcagagtcttagcctgatttcatcctagcagg
aagcatggtgctagagccctagctgagctctacattctgatctccaggca
gaaaaagaatcctcaaagcccaccctagtgacatacttcctccaaccaag
acacaactactaatccttgcagaatagctctattccctggagactaagca
ttcaaatctttcaggccatgggggccattcttattcaaacttctacatcc
cccccccaccccccgcaagtcattttctcagatgtattatcactaccatg
aaatgtgactatcacactcctttactttgaaggaaggattcctttgtgaa
aacgttcttttggccccgttatggaatatgggggagaaagaagtgggggg
gtggg

gaattcagcacatttgggaataggtgctttggctgtgcagatgtgttggg
atgagatctgaaaataggaggggaagttgcaagattggacttcttggatc
catataaattaaagcaatgaataaattcatcatgggcttctccagagcac
agttttcactttccagaatggatggatcaatttctgagagcaataggtca
gcctatagttttaaaatgacacagtgtgataaacataatacaatggtttg
gacaagaatgtagctgagtgtagtttggaaggatgaatatttgactatag
aataaagcacagtaagggatgagaaaatcataattgaaacatggaagtcc
acttaggactgtctatagctatgtcactgtggagagaggtaaatactcca
aaaaacaaacactcagaataatcaattctgtcttaccacattccccagga
tgactgggccagctatggactaaaacactctgaaatcattagccaaaata
aatatttcattctttgatttttttccacagatgtctcttcatattgatta
acactcttatgtaagtcatagagacatgcatccttatcatcctatgttaa
gagcaaaattacaaatgtgtcataaatatttttctatatcccaaataacc
accattctcagttctagaatatcttgttgctacaggcaacaataagcaat
attatcaccactcaacaggtgtaaagtacctaatttatgccatcaagtat
aggtcaagttaaagctataaatgagataaattcagtcttttctctcatgg
agggccaagactcaaaacctgtatatatattttcttttgagcctttttta
tggaaatgatttttccagcaattagaaaagacaaaacaaacaaaacaaaa
caaccctgaaaggtgcatggatagggtctttcctttttccttacttctga
taatacagaatggatagaaacaactttattcaggattctttattccacat
attttaaatgggcatttttttatgaagaataataaggaacaattttattc
tgtagtttggctcttgcatgagacctaggcctttactttactgaattcat
tttctaagaaccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5703933_5704786
seq2: B6Ng01-294O01.b_48_902 (reverse)

seq1  CCCA-CCCCCCACTTCTTTCTCCCCCATATTCCATAACGGGGCCAAAAGA  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCCACTTCTTTCTCCCCCATATTCCATAACGGGGCCAAAAGA  50

seq1  ACGTTTTCACAAAGGAATCCTTCCTTCAAAGTAAAGGAGTGTGATAGTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTCACAAAGGAATCCTTCCTTCAAAGTAAAGGAGTGTGATAGTCA  100

seq1  CATTTCATGGTAGTGATAATACATCTGAGAAAATGACTTGCGGGGGGTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATGGTAGTGATAATACATCTGAGAAAATGACTTGCGGGGGGTGG  150

seq1  GGGGGGGATGTAGAAGTTTGAATAAGAATGGCCCCCATGGCCTGAAAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGATGTAGAAGTTTGAATAAGAATGGCCCCCATGGCCTGAAAGAT  200

seq1  TTGAATGCTTAGTCTCCAGGGAATAGAGCTATTCTGCAAGGATTAGTAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCTTAGTCTCCAGGGAATAGAGCTATTCTGCAAGGATTAGTAGT  250

seq1  TGTGTCTTGGTTGGAGGAAGTATGTCACTAGGGTGGGCTTTGAGGATTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTGGTTGGAGGAAGTATGTCACTAGGGTGGGCTTTGAGGATTCT  300

seq1  TTTTCTGCCTGGAGATCAGAATGTAGAGCTCAGCTAGGGCTCTAGCACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCTGGAGATCAGAATGTAGAGCTCAGCTAGGGCTCTAGCACCA  350

seq1  TGCTTCCTGCTAGGATGAAATCAGGCTAAGACTCTGAAACTGTAAGCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGCTAGGATGAAATCAGGCTAAGACTCTGAAACTGTAAGCAGG  400

seq1  CCTCCAACTACTTGTTTTTTTAATAAGAGTTTCCTTGGTCATAGTGACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACTACTTGTTTTTTTAATAAGAGTTTCCTTGGTCATAGTGACTC  450

seq1  TACTCAGCAATAGACCTGGAGGAAAGAGAAAGTGAAAGAGAATTATTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCAATAGACCTGGAGGAAAGAGAAAGTGAAAGAGAATTATTTTG  500

seq1  GCTTACTACCTCATAGATTTTAGTTCATAGTCATCTGCATAATCATCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTACCTCATAGATTTTAGTTCATAGTCATCTGCATAATCATCTGG  550

seq1  CCTCATTGTACATGAACCTCTACTCAGTGAGACAGGACATCAGGGTGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGTACATGAACCTCTACTCAGTGAGACAGGACATCAGGGTGACA  600

seq1  CAAAGGGCAGACAGGATACAAAGAGACAGAAAGAAGTCAGATACAATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCAGACAGGATACAAAGAGACAGAAAGAAGTCAGATACAATATT  650

seq1  GACCCTTCAAAGGTATCCTTCCAGTGACCCATTTCCCATAACTGTGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCAAAGGTATCCTTCCAGTGACCCATTTCCCATAACTGTGCTCT  700

seq1  ACCACCTCAGAGTGCTTGGATAAGTGAAATCATCAACAGATTAGTCCAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCAGAGTGCTTGGATAAGTGAAATCATCAACAGATTAGTCCAAG  750

seq1  CAAACATTCAACAATGAATTCATTAATGGAACTTTCCCTTGATGAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTCAACAATGAATTCATTAATGGAACTTTCCCTTGATGAAATGA  800

seq1  GAGGTCTTGTGGTTTTGCAAACACCTTTAAAATCACACCAACTACCATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTGTGGTTTTGCAAACACCTTTAAAATCACACCAACTACCATAG  850

seq1  AATTC  854
      |||||
seq2  AATTC  855


seq1: chr13_5586209_5587305
seq2: B6Ng01-294O01.g_70_1184

seq1  GAATTCAGCACATTTGGGAATAGGTGCTTTGGCTGTGCAGATGTGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACATTTGGGAATAGGTGCTTTGGCTGTGCAGATGTGTTGGG  50

seq1  ATGAGATCTGAAAATAGGAGGGGAAGTTGCAAGATTGGACTTCTTGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTGAAAATAGGAGGGGAAGTTGCAAGATTGGACTTCTTGGATC  100

seq1  CATATAAATTAAAGCAATGAATAAATTCATCATGGGCTTCTCCAGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATTAAAGCAATGAATAAATTCATCATGGGCTTCTCCAGAGCAC  150

seq1  AGTTTTCACTTTCCAGAATGGATGGATCAATTTCTGAGAGCAATAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACTTTCCAGAATGGATGGATCAATTTCTGAGAGCAATAGGTCA  200

seq1  GCCTATAGTTTTAAAATGACACAGTGTGATAAACATAATACAATGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGTTTTAAAATGACACAGTGTGATAAACATAATACAATGGTTTG  250

seq1  GACAAGAATGTAGCTGAGTGTAGTTTGGAAGGATGAATATTTGACTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAATGTAGCTGAGTGTAGTTTGGAAGGATGAATATTTGACTATAG  300

seq1  AATAAAGCACAGTAAGGGATGAGAAAATCATAATTGAAACATGGAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCACAGTAAGGGATGAGAAAATCATAATTGAAACATGGAAGTCC  350

seq1  ACTTAGGACTGTCTATAGCTATGTCACTGTGGAGAGAGGTAAATACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACTGTCTATAGCTATGTCACTGTGGAGAGAGGTAAATACTCCA  400

seq1  AAAAACAAACACTCAGAATAATCAATTCTGTCTTACCACATTCCCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACACTCAGAATAATCAATTCTGTCTTACCACATTCCCCAGGA  450

seq1  TGACTGGGCCAGCTATGGACTAAAACACTCTGAAATCATTAGCCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGCCAGCTATGGACTAAAACACTCTGAAATCATTAGCCAAAATA  500

seq1  AATATTTCATTCTTTGATTTTTTTCCACAGATGTCTCTTCATATTGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATTCTTTGATTTTTTTCCACAGATGTCTCTTCATATTGATTA  550

seq1  ACACTCTTATGTAAGTCATAGAGACATGCATCCTTATCATCCTATGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTATGTAAGTCATAGAGACATGCATCCTTATCATCCTATGTTAA  600

seq1  GAGCAAAATTACAAATGTGTCATAAATATTTTTCTATATCCCAAATAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATTACAAATGTGTCATAAATATTTTTCTATATCCCAAATAACC  650

seq1  ACCATTCTCAGTTCTAGAATATCTTGTTGCTACAGGCAACAATAAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTCAGTTCTAGAATATCTTGTTGCTACAGGCAACAATAAGCAAT  700

seq1  ATTATCACCACTCAACAGGTGTAAAGTACCTAATTTATGCCATCAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACCACTCAACAGGTGTAAAGTACCTAATTTATGCCATCAAGTAT  750

seq1  AGGTCAAGTTAAAGCTATAAATGAGATAAATTCAGTCTTTTCTCTCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGTTAAAGCTATAAATGAGATAAATTCAGTCTTTTCTCTCATGG  800

seq1  AGGGCCAAGACTCAAAACCTGTATATATATTTTCTTTTGAGCCTTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAGACTCAAAACCTGTATATATATTTTCTTTTGAGCCTTTTTTA  850

seq1  TGGAAATGA-TTTTCCAGCAATTAGAAAAGACAAAACAAAACAAAACAAA  899
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TGGAAATGATTTTTCCAGCAATTAGAAAAGACAAAAC-AAACAAAACAAA  899

seq1  ACAACCCTGAAAGGTGCATGGATA-GGTC-TTCCTTTTTCCCTACTTCTG  947
      |||||||||||||||||||||||| |||| ||||||||||| ||||||||
seq2  ACAACCCTGAAAGGTGCATGGATAGGGTCTTTCCTTTTTCCTTACTTCTG  949

seq1  ATAATACAGAATGGATAGAAACAACTT--ATCAGGAT--CTTATT-CACA  992
      |||||||||||||||||||||||||||   |||||||   ||||| ||||
seq2  ATAATACAGAATGGATAGAAACAACTTTATTCAGGATTCTTTATTCCACA  999

seq1  TATTTAAAAT-GGCA--TTTTTATG-AGAATAATAA-GAACA--TTTA-T  1034
      ||||| |||| ||||  |||||||| |||||||||| |||||  |||| |
seq2  TATTTTAAATGGGCATTTTTTTATGAAGAATAATAAGGAACAATTTTATT  1049

seq1  CTGTAGGTTTGGCTC-TGCATGAGGACTA-GCCTTTACCTTACTGA--TC  1080
      ||||| ||||||||| ||||||||  ||| |||||||| |||||||  ||
seq2  CTGTA-GTTTGGCTCTTGCATGAGACCTAGGCCTTTACTTTACTGAATTC  1098

seq1  CATTTCTAAGACCCAAG  1097
        ||||||||| |||||
seq2  ATTTTCTAAGAACCAAG  1115


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