BAC Information

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BAC

Clone NameB6Ng01-295L07
Chromosome13 (Build37)
Map Location 113,593,121 - 113,728,146
singlet/doubletdoublet
Overlap genePpap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756
Upstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneCcnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295L07.bB6Ng01-295L07.g
ACCGA091504GA091505
length1,1611,020
definitionB6Ng01-295L07.b B6Ng01-295L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,726,997 - 113,728,146)(113,593,121 - 113,594,115)
sequence
gaattctgccctgtcagaatcaggcggaatttagcacccttatcctttcc
gttcgttcctctcaaggtgctttcggacagcaaccaaatgggagagatcc
ccagggagatcagggcaaggtgtttggacttaaggattctcaagatttta
tttccagtcacaaaacaggcctgggccacagcacgtgagtcctcaggatc
acacctatctgggagggagtcaggcctttcttggccagtttgtaaatctg
atccttcaagtcgtcagatgtcaacttcagccacatggggacgctatggc
ggtagggtagcaaggactgggacaggcctttcctgggagcgtgcatgcga
cccatgatggtggaggtctggcagcaaagagccctacacaaagttatata
tgtgtgtgattctaatacaggcccataatagaaaatttgtctgtacagac
tataaagaaagtttctgtccctcctcaccactctagttctaaacatttac
gtttttgtatatcttttcaaatatagtacaagcgaatatcagtaattttc
cttttacacaaatggatccatcatatactttgtgtaacttctaccacaat
ttccttattcatttggctaggacaaatgaatatttgtctattttgtctat
ttgaatatttttactattcataaagtggctattaacactggcatataaag
ttgtcatttttcttaagtcagtatctgtatataaaactgttaggtcgttg
gacctggaaatggcatcccagccccttgctcctccatggcttctgcttca
gtgcccacctggaggctcctgctcagcttgagtttccctcatgatgggtt
gtaaaactggaataagcctttcctgcccaagttggttttgggtcatggag
tttaccatgtaatagaagtcaaactaagaggagatgttagctagagtgaa
caaggtgtttaccccttcccctgggaaaagaaattagagggacagtaaac
gttgtgtttaattttatgacaagaaagtcagcagacccaattaacacttc
acatctcgtttacctcagtacttcagatcttttaaatttttggtaatgcc
atagtgctatctcataaatagtttgtctaattcatgaactaggtaacttg
aggtattttaa
gaattcactctgcgggattcagtcttaggacatccattaggatgtggtga
cctgtagcccaggcacttgtggtgcagaggtaggaaaatgtttagttcaa
gaccagcttgggctacctagggagagcccgggtcactaaccaagaacagc
ctttatagaaacatcttttcagatatcggggtagattattttaagttatt
agtttatgaactatttccccgttctctcttttctgccttctttcctttcc
ctttcttccctctctcctttccttctttcttccttctttctagatagggt
cttgctgtgcaacctggtttggaacctgtgtcctcttcttcctcggcctc
agtgctgggaatatcggcacgctctcccgtgcctggctaaagtatggtgt
tgcttttctacggacccaacattgatgaggagcgctgaaaacaatagggc
ctcacagctaatgttaataacatgaagccatatggtagatttatactttc
taattatactttgtaatttctaattaaaattaattaattttgtttcagta
tacccaagcacagtgctcctagtcctcccccccacccaccccccccagat
ccactcctctgtttcccctcagaaaagagcaggcctccccaggtgtatcc
acggaacatgacataatcagagacagtgagattagccacgaacctctcat
atcagggctggagggaagtttgatgtggtttgcctgggtgccctgtctca
tgttttgtaaatcccatccctcacatggtttaaaaataggaagattcctt
gagttagaggctggtcctgggttgcgcagcgagttcgggtcagccttcaa
atttctattgaacaaataaacctgaacaaagattatggacagttgtggaa
aacacatatgcagtgcagttttattatttcttgtttttcttgctaggtag
gtcttatatgttgcacaatggacacttctggtgaactcctgagtcatcct
tataaacaatgtaattggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113726997_113728146
seq2: B6Ng01-295L07.b_50_1210 (reverse)

seq1  TTAAAATAACTCAAAGTTA-CTAG-TCATGAAAATAGA-AAACTA-TTAT  46
      |||||||| ||| |||||| |||| ||||| || |||| |||||| ||||
seq2  TTAAAATACCTC-AAGTTACCTAGTTCATG-AATTAGACAAACTATTTAT  48

seq1  GAGATACCACTAT-GCATTAACCAAAATTT-AAAGATCTGAAGTACTGAG  94
      |||||| |||||| |||||| | ||||||| |||||||||||||||||||
seq2  GAGATAGCACTATGGCATTACCAAAAATTTAAAAGATCTGAAGTACTGAG  98

seq1  GTTAAGGGAGGGTGTGGAGTG-TAATGGGGTCTGCTGAC-TTCTTGTCAT  142
      || || |   | |||| |||| |||| |||||||||||| ||||||||||
seq2  GTAAACG--AGATGTGAAGTGTTAATTGGGTCTGCTGACTTTCTTGTCAT  146

seq1  AAAATTAAACAC-ACGTTTACTGTCCCTCTAATT--CTTTCCCAGGGGAA  189
      |||||||||||| |||||||||||||||||||||   |||||||||||||
seq2  AAAATTAAACACAACGTTTACTGTCCCTCTAATTTCTTTTCCCAGGGGAA  196

seq1  -GGGTAAACACC-TGTTCACTCTAGCTAACATCTCCTCTTAGTTTGACTT  237
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAACACCTTGTTCACTCTAGCTAACATCTCCTCTTAGTTTGACTT  246

seq1  CTATTACATGGTAAACTCCATGA-CCAAAACCAACTTGGGCAGGAAAGGC  286
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTATTACATGGTAAACTCCATGACCCAAAACCAACTTGGGCAGGAAAGGC  296

seq1  TTATTCCAG-TTTACAACCCATCATGAGGGAAACTCAAGCTGAGCAGGAG  335
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAGTTTTACAACCCATCATGAGGGAAACTCAAGCTGAGCAGGAG  346

seq1  CCTCCAGGTGGGCACTGAAGCAGAAGCCATGGAGGAGCAAGGGGCTGGGA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGTGGGCACTGAAGCAGAAGCCATGGAGGAGCAAGGGGCTGGGA  396

seq1  TGCCATTTCCAGGTCCAACGACCTAACAGTTTTATATACAGATACTGACT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCCAGGTCCAACGACCTAACAGTTTTATATACAGATACTGACT  446

seq1  TAAGAAAAATGACAACTTTATATGCCAGTGTTAATAGCCACTTTATGAAT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAATGACAACTTTATATGCCAGTGTTAATAGCCACTTTATGAAT  496

seq1  AGTAAAAATATTCAAATAGACAAAATAGACAAATATTCATTTGTCCTAGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATATTCAAATAGACAAAATAGACAAATATTCATTTGTCCTAGC  546

seq1  CAAATGAATAAGGAAATTGTGGTAGAAGTTACACAAAGTATATGATGGAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATAAGGAAATTGTGGTAGAAGTTACACAAAGTATATGATGGAT  596

seq1  CCATTTGTGTAAAAGGAAAATTACTGATATTCGCTTGTACTATATTTGAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTGTAAAAGGAAAATTACTGATATTCGCTTGTACTATATTTGAA  646

seq1  AAGATATACAAAAACGTAAATGTTTAGAACTAGAGTGGTGAGGAGGGACA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATACAAAAACGTAAATGTTTAGAACTAGAGTGGTGAGGAGGGACA  696

seq1  GAAACTTTCTTTATAGTCTGTACAGACAAATTTTCTATTATGGGCCTGTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTCTTTATAGTCTGTACAGACAAATTTTCTATTATGGGCCTGTA  746

seq1  TTAGAATCACACACATATATAACTTTGTGTAGGGCTCTTTGCTGCCAGAC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCACACACATATATAACTTTGTGTAGGGCTCTTTGCTGCCAGAC  796

seq1  CTCCACCATCATGGGTCGCATGCACGCTCCCAGGAAAGGCCTGTCCCAGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCATCATGGGTCGCATGCACGCTCCCAGGAAAGGCCTGTCCCAGT  846

seq1  CCTTGCTACCCTACCGCCATAGCGTCCCCATGTGGCTGAAGTTGACATCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTACCCTACCGCCATAGCGTCCCCATGTGGCTGAAGTTGACATCT  896

seq1  GACGACTTGAAGGATCAGATTTACAAACTGGCCAAGAAAGGCCTGACTCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTTGAAGGATCAGATTTACAAACTGGCCAAGAAAGGCCTGACTCC  946

seq1  CTCCCAGATAGGTGTGATCCTGAGGACTCACGTGCTGTGGCCCAGGCCTG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGATAGGTGTGATCCTGAGGACTCACGTGCTGTGGCCCAGGCCTG  996

seq1  TTTTGTGACTGGAAATAAAATCTTGAGAATCCTTAAGTCCAAACACCTTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACTGGAAATAAAATCTTGAGAATCCTTAAGTCCAAACACCTTG  1046

seq1  CCCTGATCTCCCTGGGGATCTCTCCCATTTGGTTGCTGTCCGAAAGCACC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCTCCCTGGGGATCTCTCCCATTTGGTTGCTGTCCGAAAGCACC  1096

seq1  TTGAGAGGAACGAACGGAAAGGATAAGGGTGCTAAATTCCGCCTGATTCT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGAACGAACGGAAAGGATAAGGGTGCTAAATTCCGCCTGATTCT  1146

seq1  GACAGGGCAGAATTC  1150
      |||||||||||||||
seq2  GACAGGGCAGAATTC  1161

seq1: chr13_113593121_113594115
seq2: B6Ng01-295L07.g_70_1089

seq1  GAATTCACTCTGCGGGATTCAGTCTTAGGACATCCATTAGGATGTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCGGGATTCAGTCTTAGGACATCCATTAGGATGTGGTGA  50

seq1  CCTGTAGCCCAGGCACTTGTGGTGCAGAGGTAGGAAAATGTTTAGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCCCAGGCACTTGTGGTGCAGAGGTAGGAAAATGTTTAGTTCAA  100

seq1  GACCAGCTTGGGCTACCTAGGGAGAGCCCGGGTCACTAACCAAGAACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTTGGGCTACCTAGGGAGAGCCCGGGTCACTAACCAAGAACAGC  150

seq1  CTTTATAGAAACATCTTTTCAGATATCGGGGTAGATTATTTTAAGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGAAACATCTTTTCAGATATCGGGGTAGATTATTTTAAGTTATT  200

seq1  AGTTTATGAACTATTTCCCCGTTCTCTCTTTTCTGCCTTCTTTCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGAACTATTTCCCCGTTCTCTCTTTTCTGCCTTCTTTCCTTTCC  250

seq1  CTTTCTTCCCTCTCTCCTTTCCTTCTTTCTTCCTTCTTTCTAGATAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCCTCTCTCCTTTCCTTCTTTCTTCCTTCTTTCTAGATAGGGT  300

seq1  CTTGCTGTGCAACCTGGTTTGGAACCTGTGTCCTCTTCTTCCTCGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGCAACCTGGTTTGGAACCTGTGTCCTCTTCTTCCTCGGCCTC  350

seq1  AGTGCTGGGAATATCGGCACGCTCTCCCGTGCCTGGCTAAAGTATGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGAATATCGGCACGCTCTCCCGTGCCTGGCTAAAGTATGGTGT  400

seq1  TGCTTTTCTACGGACCCAACATTGATGAGGAGCGCTGAAAACAATAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTACGGACCCAACATTGATGAGGAGCGCTGAAAACAATAGGGC  450

seq1  CTCACAGCTAATGTTAATAACATGAAGCCATATGGTAGATTTATACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTAATGTTAATAACATGAAGCCATATGGTAGATTTATACTTTC  500

seq1  TAATTATACTTTGTAATTTCTAATTAAAATTAATTAATTTTGTTTCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACTTTGTAATTTCTAATTAAAATTAATTAATTTTGTTTCAGTA  550

seq1  TACCCAAGCACAGTGCTCCTAGTCCTCCCCCCCACCCCCCCCCCCCAGAT  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACCCAAGCACAGTGCTCCTAGTCCTCCCCCCCACCCACCCCCCCCAGAT  600

seq1  CCACTCCTCTGTTTCCCCTCAGAAAAGAGCAGGCCT-CCCAGGTGTATCC  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCACTCCTCTGTTTCCCCTCAGAAAAGAGCAGGCCTCCCCAGGTGTATCC  650

seq1  ACGGAACATGACATAATCAGAGACAGTGAGATTAGCCACGAACC-CTCAT  698
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACGGAACATGACATAATCAGAGACAGTGAGATTAGCCACGAACCTCTCAT  700

seq1  ATCAGGGCTGGAGGGAAG-TTGATGTGG-TTGCCT-GGTGCCCTGTCTCA  745
      |||||||||||||||||| ||||||||| |||||| ||||||||||||||
seq2  ATCAGGGCTGGAGGGAAGTTTGATGTGGTTTGCCTGGGTGCCCTGTCTCA  750

seq1  TG-TTTGT-AATCCCATCCCTCACATGGTT--AAAATAGGAAGATTCC-T  790
      || ||||| |||||||||||||||||||||  |||||||||||||||| |
seq2  TGTTTTGTAAATCCCATCCCTCACATGGTTTAAAAATAGGAAGATTCCTT  800

seq1  GAGTTAGAGGCTGGT-CTGGGTTGCGCAGCGAGTTCGGGTCAGCC-TCAA  838
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  GAGTTAGAGGCTGGTCCTGGGTTGCGCAGCGAGTTCGGGTCAGCCTTCAA  850

seq1  ATTTCTATTGAACAAATAAA-CTG-ACAAAGATCATGTACAGT--GGGAA  884
      |||||||||||||||||||| ||| |||||||| ||| |||||   ||||
seq2  ATTTCTATTGAACAAATAAACCTGAACAAAGATTATGGACAGTTGTGGAA  900

seq1  AACACATATGCAGTGCAGTTTTATTAATTC-TGTTTT--CTGCCAGGT--  929
      |||||||||||||||||||||||||| ||| ||||||   ||| ||||  
seq2  AACACATATGCAGTGCAGTTTTATTATTTCTTGTTTTTCTTGCTAGGTAG  950

seq1  GGCCTATAT-TTGCAACAT-GACACATCCTGTTGACCT-CTGAGTCAT-C  975
      | | ||||| |||||  || ||||| | ||| ||| || ||||||||| |
seq2  GTCTTATATGTTGCACAATGGACAC-TTCTGGTGAACTCCTGAGTCATCC  999

seq1  TTAT-AGTAATGTAATTGGCC  995
      |||| |  |||||||||||||
seq2  TTATAAACAATGTAATTGGCC  1020