BAC Information

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BAC

Clone NameB6Ng01-295O20
Chromosome13 (Build37)2 (Build37)
Map Location 39,567,121 - 39,567,414101,945,822 - 101,946,934
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
Downstream geneLOC382747, A230103O09Rik, Ofcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295O20.bB6Ng01-295O20.g
ACCGA091672GA091673
length2251,100
definitionB6Ng01-295O20.b B6Ng01-295O20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,567,121 - 39,567,414)(101,945,822 - 101,946,934)
sequence
gaattctatgctcacgctctgactctctctctttctctgtgcgtacatat
gtatgtatgtgtgctgtattatatatgtatgtgtgtatgtatgtgcatat
gtgtgtatgtatgtgtacatatatgtgtgtatatgcgtatgtgtgtatgt
atgtgtgtatataggtatatgcatgtgtgtgtatgtatatgtacatatgt
gtgcattgatatgtatatgtatgta
gaattcagtacttcactagggctagccagagttaagacctgcaggaatag
ggacacttcacatgtgacacagcagatattcaagcagaaactgagagtag
gactgtccccaagagatggagcaagtatggcaagccagtttaaaaaaaaa
aaaaaaaaaggcccgtgtccactgcttccaggttagcccaggggagcact
cgtgtcttcccagtgatcccctgggaagaaagaagagtcctctcccaggg
cagccattatgaagcttcaccaatagagtggacggtgtaaacgaaaagcc
ctggaggttgtacagcaggatcaagtggtcatcagggccacaattccccc
atcgactccaggcggattcccttcctcaccccaccttgtcttctagggag
cacggtgaacccttggcatccctggctgaaggctgtgtcactcccacctc
ggtccttgtcagacagtatccctccctcatgtctttacattatcttctta
gaacaccacgcagactgcaataagggctctccctactataatatgacctc
atgttaactattcacatctgcagtgacccaatttccaagttagggcatgt
ccttggttactgggaattaagatctgaacatgctcttatgttcaaaccac
cgagaaagcagaagccgatgcctgtgaaagtcatcacacttcacaagtgt
tggacacgcatgcatctctaggtgacaacttaaaacacaacggtgatgag
tccatggctgtgctagtgtacggggtgactgtagccagcttccacaacct
gaacggcttcagcagcagaagctgattttcccgaacttctggaggacaga
tgtccaaaatcaacgtatatgagacacgaggacagccggctttcttctcc
ctgtggctttacatcaccttctgtctcttggtatctgagtccaaattttc
tctcttggaggacttcagctgtgatcatttaagccactctgtgacctcat
tttatcaatatgttctttgccgtgctatgtgactgtcactccaggtggtt
agaaatgctgcagctcagtaaagccacacctcagtaatctttgggcgtgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39567121_39567414
seq2: B6Ng01-295O20.b_97_266 (reverse)

seq1  TACATACATATACATACACATAGGGGACTTA-GTTAATA-ACATTTATGA  48
      ||||||||||||||||  ||  |   || || ||  ||| ||||     |
seq2  TACATACATATACATA-TCAATGCACACATATGTACATATACAT-----A  44

seq1  AACTCAAGTGTAATATTTTTCAACACTATAAAGTAACAAAAACTATATTG  98
       || ||  ||  ||||      || ||||| |   ||| | ||       
seq2  CACACACATG-CATAT------AC-CTATATA--CACACATAC-------  77

seq1  AAATAATTTTCACTGAGCTGGAAGCTCGATCAATGAAGAGAGCACTCGTT  148
        |||                                             
seq2  --ATA---------------------------------------------  80

seq1  GCACAGTAACGGCATCCTGCATCTTGAGTTCAAATATCACTCCTATAAAA  198
       ||||       ||| | ||||           ||| ||| | ||||   
seq2  -CACA-------CATAC-GCAT-----------ATA-CACACATATA---  106

seq1  TGTGAGGTATCTGTGCTACATACACACACACACACATGCAAACACACACG  248
                 |||             ||||| ||||      |||||| 
seq2  -----------TGT-------------ACACATACAT------ACACACA  126

seq1  TATGCACATACATATGCACATGCATACAT-GTACCTTCCCACACATA  294
      ||||||||||||||  ||||| |||| ||  |||     ||||||||
seq2  TATGCACATACATACACACATACATATATAATAC---AGCACACATA  170

seq1: chr2_101945822_101946934
seq2: B6Ng01-295O20.g_67_1166

seq1  GAATTCAGTACTTCACTAGGGCTAGCCAGAGTTAAGACCTGCAGGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTTCACTAGGGCTAGCCAGAGTTAAGACCTGCAGGAATAG  50

seq1  GGACACTTCACATGTGACACAGCAGATATTCAAGCAGAAACTGAGAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTCACATGTGACACAGCAGATATTCAAGCAGAAACTGAGAGTAG  100

seq1  GACTGTCCCCAAGAGATGGAGCAAGTATGGCAAGCCAGTTTAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCCCAAGAGATGGAGCAAGTATGGCAAGCCAGTTTAAAAAAAAA  150

seq1  AAAAAAAAAGGCCCGTGTCCACTGCTTCCAGGTTAGCCCAGGGGAGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGGCCCGTGTCCACTGCTTCCAGGTTAGCCCAGGGGAGCACT  200

seq1  CGTGTCTTCCCAGTGATCCCCTGGGAAGAAAGAAGAGTCCTCTCCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTTCCCAGTGATCCCCTGGGAAGAAAGAAGAGTCCTCTCCCAGGG  250

seq1  CAGCCATTATGAAGCTTCACCAATAGAGTGGACGGTGTAAACGAAAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTATGAAGCTTCACCAATAGAGTGGACGGTGTAAACGAAAAGCC  300

seq1  CTGGAGGTTGTACAGCAGGATCAAGTGGTCATCAGGGCCACAATTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTTGTACAGCAGGATCAAGTGGTCATCAGGGCCACAATTCCCCC  350

seq1  ATCGACTCCAGGCGGATTCCCTTCCTCACCCCACCTTGTCTTCTAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACTCCAGGCGGATTCCCTTCCTCACCCCACCTTGTCTTCTAGGGAG  400

seq1  CACGGTGAACCCTTGGCATCCCTGGCTGAAGGCTGTGTCACTCCCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGAACCCTTGGCATCCCTGGCTGAAGGCTGTGTCACTCCCACCTC  450

seq1  GGTCCTTGTCAGACAGTATCCCTCCCTCATGTCTTTACATTATCTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTGTCAGACAGTATCCCTCCCTCATGTCTTTACATTATCTTCTTA  500

seq1  GAACACCACGCAGACTGCAATAAGGGCTCTCCCTACTATAATATGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCACGCAGACTGCAATAAGGGCTCTCCCTACTATAATATGACCTC  550

seq1  ATGTTAACTATTCACATCTGCAGTGACCCAATTTCCAAGTTAGGGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACTATTCACATCTGCAGTGACCCAATTTCCAAGTTAGGGCATGT  600

seq1  CCTTGGTTACTGGGAATTAAGATCTGAACATGCTCTTATGTTCAAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTACTGGGAATTAAGATCTGAACATGCTCTTATGTTCAAACCAC  650

seq1  CGAGAAAGCAGAAGCCGATGCCTGTGAAAGTCATCACACTTCACAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAAGCAGAAGCCGATGCCTGTGAAAGTCATCACACTTCACAAGTGT  700

seq1  TGGACACGCATGCATCTCTAGGTGACAACTTAAAACACAACGGTGATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACGCATGCATCTCTAGGTGACAACTTAAAACACAACGGTGATGAG  750

seq1  TCCATGGCTGTGCTAGTGTACGGGGTGACTGTAGCCAGCTTCCACAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTGTGCTAGTGTACGGGGTGACTGTAGCCAGCTTCCACAACCT  800

seq1  GAACGGCTTCAGCAGCAGAAGCTGATTTTCCCGAACTTCTGGAGGACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGCTTCAGCAGCAGAAGCTGATTTTCCCGAACTTCTGGAGGACAGA  850

seq1  TGTCCAAAATCAACGTATATGAGACACGAGGACAGCCGGCTTTCTTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAATCAACGTATATGAGACACGAGGACAGCCGGCTTTCTTCTCC  900

seq1  CTGTGGCTTTACATCACCTTCTGTCTCTTGGTATCTGAGTCCAAATTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTTACATCACCTTCTGTCTCTTGGTATCTGAGTCCAAATTTTC  950

seq1  TCTCTTGGAAGGACTTCAGCTGTGATCATTTAAGGCCCACTCTGTGACCT  1000
      |||||||| |||||||||||||||||||||||||  ||||||||||||||
seq2  TCTCTTGG-AGGACTTCAGCTGTGATCATTTAAG--CCACTCTGTGACCT  997

seq1  CATTTTAATTCAATTATG-TCTTTGCGGTGCTTAATTGTGACTGTCAACT  1049
      |||||||  |||| |||| ||||||| |||||    |||||||||| |||
seq2  CATTTTA--TCAA-TATGTTCTTTGCCGTGCT---ATGTGACTGTC-ACT  1040

seq1  CCAGTGGGGTAAGAAATGCCTGCAAGCTCAGTAAAG-CACACCTCAGGTA  1098
      |||| | ||| ||||||| |||| |||||||||||| ||||||||| |||
seq2  CCAG-GTGGTTAGAAATG-CTGC-AGCTCAGTAAAGCCACACCTCA-GTA  1086

seq1  CATCTTTGGGGGTGG  1113
       ||||||||| ||||
seq2  -ATCTTTGGGCGTGG  1100