BAC Information

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BAC

Clone NameB6Ng01-296E03
Chromosome13 (Build37)
Map Location 119,581,835 - 119,723,628
singlet/doubletdoublet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296E03.bB6Ng01-296E03.g
ACCGA091912GA091913
length1,108865
definitionB6Ng01-296E03.b B6Ng01-296E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,581,835 - 119,582,940)(119,722,764 - 119,723,628)
sequence
gaattcttccagaattggaaaatagagcaggaagcatcttgtcgctctcc
ctcgtttcctgtaagctcacactgactagatggttacgggttgctcactt
ccaagttgtttctttccaactacaaaactctgaacttccttttctcaaga
agaaaaatcgaaacactgttaagtatgactcctagtgctcggttttgact
aatttaccaatcagcatcaggagcaatctgctagcaagggatctaggcat
cgtgaagggccagtcttcattcatgtgagcacaaagaggcaagggacagt
ttctgcaagttcacacacaagagtgaagaatcagccacttaaaggaggaa
gaaaagaggaagaaaggaaataataaaaagtaaatgataaaaataataat
aaaataaaaggcaggtataaaaactgaataattgctagttacatgtgctt
aaaataaactatttatcttattcctatatattttaatcaactccaattat
ctgtcatttattttttccaaatgaaaaagatagaaagatttttaaatgaa
aataatatttgctttgttttaagccaagaatggaaccctggatatagcca
agctctccgtagctttgcacactttgtagaaagatcagttgaatgaatta
caagttttcaatgaaaaaaggctggcccttctagtaaataacaactagca
tcataaagatgctataaatacttctttaaacgtcttccataaacatgtgc
taatgttcttgagtaatcaacatacaaaagattgaaaaacaggtatcatt
tgttgttttaattgtagaataaaaatggaaaataaattgtgttacatctt
ttaacgtatcttgtagagttttaacagaagacaaaagaaaactttacaac
ctgcattcctcttttctcttgtatattaggggacacatcagaaaattccc
tttctaagtaacaatctattgaaacatatttataaataccatgcattagt
taaatgggaatgatcatgacaaactagcagatcaagcagctgggtcttta
ttttctagtggaatataacagacattttctatgagtctcattcgtgaata
gcagagaa
gaattccaatgtcactacttcccagctgcatgacattaatcacatggtac
aacttcaccaagcctttccgaattcactttccccatatgccaaaatggag
ctgaaggcccttccccaatggcttattctgaggattaagacttagaatat
gtaaatgtactcaagactttgaggtttggggctctagaatacttgatgag
ccaacagagcattttcaactgctttttggttgttttgaacaattaatcgg
tttatgactattgtgaagttttgtcactgaatttctctagctttaagtat
tgtagataaagctaaaatgagtatctttgtgtctaatattgtaaatttat
taatgatgctcttcactttccacaaatacttattacagtaagaaagacaa
ataggaagaataactggtcaaattccgggagatttattcctggaataaac
aatactttatttccttgcacattccagaatactgtttaggctccaactgt
attaaatagatgaaaagttgaaaccctaaattgttcatcttccaacattt
tccggcctgtgatatatctttggatcagcaataattgcctggacagctat
aatagcttcattaatttttgtttgtattctgtgttctttattcagagatg
gaagaaatgcatcttctgtgtcagaatctaaatgcatttgtctaaaccta
actgtctctgatataaacatcctgatctgaaatccaaatcatagtagaga
cttctgtgaagtttctgggacaacaaaactgaaattcaatcttaaccatt
atgccagcttcaaaacccaggtctctctctctctctctctctctctctct
ctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_119581835_119582940
seq2: B6Ng01-296E03.b_45_1152

seq1  GAATTCTTCCAGAATTGGAAAATAGAGCAGGAAGCATCTTGTCGCTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGAATTGGAAAATAGAGCAGGAAGCATCTTGTCGCTCTCC  50

seq1  CTCGTTTCCTGTAAGCTCACACTGACTAGATGGTTACGGGTTGCTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTCCTGTAAGCTCACACTGACTAGATGGTTACGGGTTGCTCACTT  100

seq1  CCAAGTTGTTTCTTTCCAACTACAAAACTCTGAACTTCCTTTTCTCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGTTTCTTTCCAACTACAAAACTCTGAACTTCCTTTTCTCAAGA  150

seq1  AGAAAAATCGAAACACTGTTAAGTATGACTCCTAGTGCTCGGTTTTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCGAAACACTGTTAAGTATGACTCCTAGTGCTCGGTTTTGACT  200

seq1  AATTTACCAATCAGCATCAGGAGCAATCTGCTAGCAAGGGATCTAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCAATCAGCATCAGGAGCAATCTGCTAGCAAGGGATCTAGGCAT  250

seq1  CGTGAAGGGCCAGTCTTCATTCATGTGAGCACAAAGAGGCAAGGGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGGGCCAGTCTTCATTCATGTGAGCACAAAGAGGCAAGGGACAGT  300

seq1  TTCTGCAAGTTCACACACAAGAGTGAAGAATCAGCCACTTAAAGGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAGTTCACACACAAGAGTGAAGAATCAGCCACTTAAAGGAGGAA  350

seq1  GAAAAGAGGAAGAAAGGAAATAATAAAAAGTAAATGATAAAAATAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGGAAGAAAGGAAATAATAAAAAGTAAATGATAAAAATAATAAT  400

seq1  AAAATAAAAGGCAGGTATAAAAACTGAATAATTGCTAGTTACATGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGGCAGGTATAAAAACTGAATAATTGCTAGTTACATGTGCTT  450

seq1  AAAATAAACTATTTATCTTATTCCTATATATTTTAATCAACTCCAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTATTTATCTTATTCCTATATATTTTAATCAACTCCAATTAT  500

seq1  CTGTCATTTATTTTTTCCAAATGAAAAAGATAGAAAGATTTTTAAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTTATTTTTTCCAAATGAAAAAGATAGAAAGATTTTTAAATGAA  550

seq1  AATAATATTTGCTTTGTTTTAAGCCAAGAATGGAACCCTGGATATAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTTGCTTTGTTTTAAGCCAAGAATGGAACCCTGGATATAGCCA  600

seq1  AGCTCTCCGTAGCTTTGCACACTTTGTAGAAAGATCAGTTGAATGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCGTAGCTTTGCACACTTTGTAGAAAGATCAGTTGAATGAATTA  650

seq1  CAAGTTTTCAATGAAAAAAGGCTGGCCCTTCTAGTAAATAACAACTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTCAATGAAAAAAGGCTGGCCCTTCTAGTAAATAACAACTAGCA  700

seq1  TCATAAAGATGCTATAAATACTTCTTTAAACGTCTTCCATAAACATGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGATGCTATAAATACTTCTTTAAACGTCTTCCATAAACATGTGC  750

seq1  TAATGTTCTTGAGTAATCAACATACAAAAGATTGAAAAACAGGTATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCTTGAGTAATCAACATACAAAAGATTGAAAAACAGGTATCATT  800

seq1  TGTTGTTTTAATTGTAGAATAAAAATGGAAAATAAATTGTGTTACATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTAATTGTAGAATAAAAATGGAAAATAAATTGTGTTACATCTT  850

seq1  TTAACGTATCTTGTAGAGTTTTAACAGAAGACAAAAGAAAACTTTACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGTATCTTGTAGAGTTTTAACAGAAGACAAAAGAAAACTTTACAAC  900

seq1  CTGCATTCCTCTTTTCTCTTGTATATTAGGGGACACATCAGAAAATTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCTCTTTTCTCTTGTATATTAGGGGACACATCAGAAAATTCCC  950

seq1  -TTCTAAGTAAACAATCTATTGAAACATATTTATAAATACCATGCATTAG  999
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGT-AACAATCTATTGAAACATATTTATAAATACCATGCATTAG  999

seq1  TTAAAATGGAATGATCATGACCAAACTAGCAGGATCAAAGCAGCT-GGTC  1048
      |||||  ||||||||||||| |||||||||| |||| |||||||| ||||
seq2  TTAAATGGGAATGATCATGA-CAAACTAGCA-GATC-AAGCAGCTGGGTC  1046

seq1  -TTATTTCTAAGTGG-ATATAACAGACA-TTTCTATGAGTCTCCATCGTG  1095
       ||||||   ||||| |||||||||||| ||||||||||||||  |||||
seq2  TTTATTTTCTAGTGGAATATAACAGACATTTTCTATGAGTCTCATTCGTG  1096

seq1  -ATAGCAGAGAA  1106
       |||||||||||
seq2  AATAGCAGAGAA  1108

seq1: chr13_119722764_119723628
seq2: B6Ng01-296E03.g_68_932 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGGG  50

seq1  TTTTGAAGCTGGCATAATGGTTAAGATTGAATTTCAGTTTTGTTGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGCTGGCATAATGGTTAAGATTGAATTTCAGTTTTGTTGTCCCA  100

seq1  GAAACTTCACAGAAGTCTCTACTATGATTTGGATTTCAGATCAGGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCACAGAAGTCTCTACTATGATTTGGATTTCAGATCAGGATGTT  150

seq1  TATATCAGAGACAGTTAGGTTTAGACAAATGCATTTAGATTCTGACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGAGACAGTTAGGTTTAGACAAATGCATTTAGATTCTGACACAG  200

seq1  AAGATGCATTTCTTCCATCTCTGAATAAAGAACACAGAATACAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCATTTCTTCCATCTCTGAATAAAGAACACAGAATACAAACAAAA  250

seq1  ATTAATGAAGCTATTATAGCTGTCCAGGCAATTATTGCTGATCCAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAAGCTATTATAGCTGTCCAGGCAATTATTGCTGATCCAAAGAT  300

seq1  ATATCACAGGCCGGAAAATGTTGGAAGATGAACAATTTAGGGTTTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGGCCGGAAAATGTTGGAAGATGAACAATTTAGGGTTTCAACT  350

seq1  TTTCATCTATTTAATACAGTTGGAGCCTAAACAGTATTCTGGAATGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTATTTAATACAGTTGGAGCCTAAACAGTATTCTGGAATGTGCA  400

seq1  AGGAAATAAAGTATTGTTTATTCCAGGAATAAATCTCCCGGAATTTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAAGTATTGTTTATTCCAGGAATAAATCTCCCGGAATTTGACC  450

seq1  AGTTATTCTTCCTATTTGTCTTTCTTACTGTAATAAGTATTTGTGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCTTCCTATTTGTCTTTCTTACTGTAATAAGTATTTGTGGAAAG  500

seq1  TGAAGAGCATCATTAATAAATTTACAATATTAGACACAAAGATACTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCATCATTAATAAATTTACAATATTAGACACAAAGATACTCATT  550

seq1  TTAGCTTTATCTACAATACTTAAAGCTAGAGAAATTCAGTGACAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTATCTACAATACTTAAAGCTAGAGAAATTCAGTGACAAAACTT  600

seq1  CACAATAGTCATAAACCGATTAATTGTTCAAAACAACCAAAAAGCAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGTCATAAACCGATTAATTGTTCAAAACAACCAAAAAGCAGTTG  650

seq1  AAAATGCTCTGTTGGCTCATCAAGTATTCTAGAGCCCCAAACCTCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTCTGTTGGCTCATCAAGTATTCTAGAGCCCCAAACCTCAAAGT  700

seq1  CTTGAGTACATTTACATATTCTAAGTCTTAATCCTCAGAATAAGCCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTACATTTACATATTCTAAGTCTTAATCCTCAGAATAAGCCATTG  750

seq1  GGGAAGGGCCTTCAGCTCCATTTTGGCATATGGGGAAAGTGAATTCGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGCCTTCAGCTCCATTTTGGCATATGGGGAAAGTGAATTCGGAA  800

seq1  AGGCTTGGTGAAGTTGTACCATGTGATTAATGTCATGCAGCTGGGAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGTGAAGTTGTACCATGTGATTAATGTCATGCAGCTGGGAAGTA  850

seq1  GTGACATTGGAATTC  865
      |||||||||||||||
seq2  GTGACATTGGAATTC  865