BAC Information

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BAC

Clone NameB6Ng01-296P11
Chromosome13 (Build37)
Map Location 6,501,256 - 6,577,882
singlet/doubletdoublet
Overlap genePitrm1
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
Downstream genePfkp, LOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296P11.bB6Ng01-296P11.g
ACCGA092443GA092444
length1,215964
definitionB6Ng01-296P11.b B6Ng01-296P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,576,680 - 6,577,882)(6,501,256 - 6,501,913)
sequence
gaattctgcctgaggaaaccatgcacccaagttcccagcactcaagatac
ctttatcggatggagcaacaggagaatccacagtagagaaaacagacagc
ttggcttcatcaatgtcctgctgtgtgaactttccagacttagcccagtc
tacagctttcccaaaagactggagtgtttctatggaattgggatccctgg
gaaacccaaaagagccaatactgaagcattatatcatagggggaaacaac
ctatggcaatcatgtacatttaacagttctttttttttccctctgatagt
ctacactctacataacccactgacagaacactctctgaagcatttaactc
tgactcaggaagccacacaacacactctcctgtatttaacactgcagctt
acctgctcacctcattgctagactataaaggaactcccatgaatggaggg
gtgtcaggaattctaggacattttagaagagccatggagaagatacacac
taaactagcccttccttccctaagacagacccagaatagtctagaaggta
gctggaagtaggaaaggggtctttgaagcactttgtgtataagataaagc
tcctctcagctctttaggctcctcctcaaggggtgtgtcagtgggaccct
ccccaggtttaaagtgcagttctatgatacagtcaggacaaggagaagga
tatcagaggcaggtcatgcttttggcacatggtgtacaagaattcaatgg
tggctcagaaacgtaaccatttctggaaacagtctcactcctatgaaacc
caacagaagtgtatctcaattccgactctgctcccaccagagaagttagt
tcagacaccattctgacggcattccaccatagcacactgattatgaagtt
agaatttggtctaatgtagacaatacagcaacccaaccgtgtctgttcct
tgcagacacagctggctatggtgaattgctccagatggggaccaaataaa
gagcagacgtagcctttgctgtgttgccattcacagaagcacgatgacat
tctgagaagaacagagccagtggctgggaatgtggggggccgctcatacg
ggagacatgatgactcagaactccacctgtaagaagtaagcggtgaatcc
caactgtgtgggtgattaagcaacgctcaacattaagcacccccctttct
cctctgaaatttccg

gaattcacagagactgtgacagcatgcacagggcctgcatgggtctgcac
cagatggggtcccagagctgagaggaaaaacggacatatacccacatccc
caaaccagaagctctttctagttgacaaccacttggaaatgaaatttttc
attttctccaagagagactcactgctcttaaaagcaaactactcttaaag
ttaggctgcattcccagcagtgcatgtgcaatagaaaacaaactctatgt
cattttgggatgttccttgtctcatacggttagggcagggctctttcttt
tctttttttaaaattttatctttgtattagttttattttctcttctttta
ccccacagattatctgtgtatatattatagcttccggtttctgtttttat
gggattcctgagtgtgaaaataagtcttttcatatgtaaatgaagcatat
aaatatgtgtgcttcctgtgccttttcttgggcttgtttccttccattca
tttgttttgtcttactccaatgtatttggttttgttttattttattaatt
tttactatatattatataattattatctcttagaaacccatttgtcttct
aatgagagacaggaagggggtggatctggacaggcaggggaggagctagg
aggagtaaagagaagagaaacagtaatgaggatatattatatgaaaataa
tatattttcaatagaaagagagagagagagagagagagagagagagagag
aaagagagagagagagagagagagagagagagagagagggaggcaggcat
gtctcctgcccctcacctgtggatagacaccacagcagcagttctgtgag
gaaggggatgtgatagcaggttcacatataaggctctattcttgagactt
acacaggcttcaggaacactaactgttttaattctgctggttatccaatg
gtttggtctgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6576680_6577882
seq2: B6Ng01-296P11.b_46_1260 (reverse)

seq1  CGGAAATTCGAGAG----AAGGGGGGTGCTT-ATGGTG-GCGGTGCTAAA  44
      ||||||||  ||||    ||||||||||||| ||| || ||| |||| ||
seq2  CGGAAATTTCAGAGGAGAAAGGGGGGTGCTTAATGTTGAGCGTTGCTTAA  50

seq1  CTCACCCACA---GTGGGATTTTCACGCTTTACTCTTACAGGTGAGTTTC  91
       |||||||||    |||||||  | |||||   |||||||||||   |||
seq2  -TCACCCACACAGTTGGGATTCAC-CGCTTACTTCTTACAGGTGGAGTTC  98

seq1  TGAGTCATCATGTCTCCCGTATGAGCG--CCCCCACATT-CCAGCCACTG  138
      |||||||||||||||||||||||||||  |||||||||| ||||||||||
seq2  TGAGTCATCATGTCTCCCGTATGAGCGGCCCCCCACATTCCCAGCCACTG  148

seq1  GCTCTGTTC-TCTCAGAATGTCATCGTGC-TCTGTGAATGGCAACACAGC  186
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GCTCTGTTCTTCTCAGAATGTCATCGTGCTTCTGTGAATGGCAACACAGC  198

seq1  AAAGGCTACGTCTGCTCTTTATTTGGTCCCCATCTGGAGCAATTCACCAT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTACGTCTGCTCTTTATTTGGTCCCCATCTGGAGCAATTCACCAT  248

seq1  AGCCAGCTGTGTCTGCAAGGAACAGACACGGTTGGGTTGCTGTATTGTCT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGTGTCTGCAAGGAACAGACACGGTTGGGTTGCTGTATTGTCT  298

seq1  ACATTAGACCAAATTCTAACTTCATAATCAGTGTGCTATGGTGGAATGCC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGACCAAATTCTAACTTCATAATCAGTGTGCTATGGTGGAATGCC  348

seq1  GTCAGAATGGTGTCTGAACTAACTTCTCTGGTGGGAGCAGAGTCGGAATT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGGTGTCTGAACTAACTTCTCTGGTGGGAGCAGAGTCGGAATT  398

seq1  GAGATACACTTCTGTTGGGTTTCATAGGAGTGAGACTGTTTCCAGAAATG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACACTTCTGTTGGGTTTCATAGGAGTGAGACTGTTTCCAGAAATG  448

seq1  GTTACGTTTCTGAGCCACCATTGAATTCTTGTACACCATGTGCCAAAAGC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGTTTCTGAGCCACCATTGAATTCTTGTACACCATGTGCCAAAAGC  498

seq1  ATGACCTGCCTCTGATATCCTTCTCCTTGTCCTGACTGTATCATAGAACT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGCCTCTGATATCCTTCTCCTTGTCCTGACTGTATCATAGAACT  548

seq1  GCACTTTAAACCTGGGGAGGGTCCCACTGACACACCCCTTGAGGAGGAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTAAACCTGGGGAGGGTCCCACTGACACACCCCTTGAGGAGGAGC  598

seq1  CTAAAGAGCTGAGAGGAGCTTTATCTTATACACAAAGTGCTTCAAAGACC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGCTGAGAGGAGCTTTATCTTATACACAAAGTGCTTCAAAGACC  648

seq1  CCTTTCCTACTTCCAGCTACCTTCTAGACTATTCTGGGTCTGTCTTAGGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTACTTCCAGCTACCTTCTAGACTATTCTGGGTCTGTCTTAGGG  698

seq1  AAGGAAGGGCTAGTTTAGTGTGTATCTTCTCCATGGCTCTTCTAAAATGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGCTAGTTTAGTGTGTATCTTCTCCATGGCTCTTCTAAAATGT  748

seq1  CCTAGAATTCCTGACACCCCTCCATTCATGGGAGTTCCTTTATAGTCTAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTCCTGACACCCCTCCATTCATGGGAGTTCCTTTATAGTCTAG  798

seq1  CAATGAGGTGAGCAGGTAAGCTGCAGTGTTAAATACAGGAGAGTGTGTTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGTGAGCAGGTAAGCTGCAGTGTTAAATACAGGAGAGTGTGTTG  848

seq1  TGTGGCTTCCTGAGTCAGAGTTAAATGCTTCAGAGAGTGTTCTGTCAGTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTCCTGAGTCAGAGTTAAATGCTTCAGAGAGTGTTCTGTCAGTG  898

seq1  GGTTATGTAGAGTGTAGACTATCAGAGGGAAAAAAAAAGAACTGTTAAAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGTAGAGTGTAGACTATCAGAGGGAAAAAAAAAGAACTGTTAAAT  948

seq1  GTACATGATTGCCATAGGTTGTTTCCCCCTATGATATAATGCTTCAGTAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGATTGCCATAGGTTGTTTCCCCCTATGATATAATGCTTCAGTAT  998

seq1  TGGCTCTTTTGGGTTTCCCAGGGATCCCAATTCCATAGAAACACTCCAGT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTTGGGTTTCCCAGGGATCCCAATTCCATAGAAACACTCCAGT  1048

seq1  CTTTTGGGAAAGCTGTAGACTGGGCTAAGTCTGGAAAGTTCACACAGCAG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGAAAGCTGTAGACTGGGCTAAGTCTGGAAAGTTCACACAGCAG  1098

seq1  GACATTGATGAAGCCAAGCTGTCTGTTTTCTCTACTGTGGATTCTCCTGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGATGAAGCCAAGCTGTCTGTTTTCTCTACTGTGGATTCTCCTGT  1148

seq1  TGCTCCATCCGATAAAGGTATCTTGAGTGCTGGGAACTTGGGTGCATGGT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATCCGATAAAGGTATCTTGAGTGCTGGGAACTTGGGTGCATGGT  1198

seq1  TTCCTCAGGCAGAATTC  1203
      |||||||||||||||||
seq2  TTCCTCAGGCAGAATTC  1215


seq1: chr13_6501256_6501913
seq2: B6Ng01-296P11.g_370_1031

seq1  TTTTTTTAAAATTTTATCTTTGTATTAGTTTTATTTTCTCTTCTTTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAATTTTATCTTTGTATTAGTTTTATTTTCTCTTCTTTTACC  50

seq1  CCACAGATTATCTGTGTATATATTATAGCTTCCGGTTTCTGTTTTTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATTATCTGTGTATATATTATAGCTTCCGGTTTCTGTTTTTATGG  100

seq1  GATTCCTGAGTGTGAAAATAAGTCTTTTCATATGTAAATGAAGCATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGAGTGTGAAAATAAGTCTTTTCATATGTAAATGAAGCATATAA  150

seq1  ATATGTGTGCTTCCTGTGCCTTTTCTTGGGCTTGTTTCCTTCCATTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGCTTCCTGTGCCTTTTCTTGGGCTTGTTTCCTTCCATTCATT  200

seq1  TGTTTTGTCTTACTCCAATGTATTTGGTTTTGTTTTATTTTATTAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTCTTACTCCAATGTATTTGGTTTTGTTTTATTTTATTAATTTT  250

seq1  TACTATATATTATATAATTATTATCTCTTAGAAACCCATTTGTCTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATATTATATAATTATTATCTCTTAGAAACCCATTTGTCTTCTAA  300

seq1  TGAGAGACAGGAAGGGGGTGGATCTGGACAGGCAGGGGAGGAGCTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACAGGAAGGGGGTGGATCTGGACAGGCAGGGGAGGAGCTAGGAG  350

seq1  GAGTAAAGAGAAGAGAAACAGTAATGAGGATATATTATATGAAAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGAGAAGAGAAACAGTAATGAGGATATATTATATGAAAATAATA  400

seq1  TATTTTCAATAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  TATTTTCAATAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  450

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGCAGGCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGCAGGCATGT  500

seq1  CTCCTGCCCCTCACCTGTGGATAGACACCACAGCAGCAGTTCTGTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCCCTCACCTGTGGATAGACACCACAGCAGCAGTTCTGTGAGGA  550

seq1  AGGGGATGTGATAGCAGGTTCACATCATAAGGCTCTAATCTTGAGAC-TA  599
      ||||||||||||||||||||||||| ||||||||||| ||||||||| ||
seq2  AGGGGATGTGATAGCAGGTTCACAT-ATAAGGCTCTATTCTTGAGACTTA  599

seq1  CACAGGCTTCAGGAACACT-ACAGTTTTAATTCTG-TTGTTATCC-ATGG  646
      ||||||||||||||||||| || |||||||||||| | ||||||| ||||
seq2  CACAGGCTTCAGGAACACTAACTGTTTTAATTCTGCTGGTTATCCAATGG  649

seq1  TTT-GTCTGTTTG  658
      ||| |||||||||
seq2  TTTGGTCTGTTTG  662


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