BAC Information

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BAC

Clone NameB6Ng01-297B24
Chromosome13 (Build37)
Map Location 112,856,768 - 112,970,962
singlet/doubletdoublet
Overlap geneLOC100040716
Upstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
Downstream geneLOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B24.bB6Ng01-297B24.g
ACCGA092564GA092565
length1,0211,094
definitionB6Ng01-297B24.b B6Ng01-297B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,969,948 - 112,970,962)(112,856,768 - 112,857,860)
sequence
gaattctcttgcattcttttgtaggcttctggtgcctacaggtgatctca
actttatgtctataattcatttgagtcaattttagtattttatgcaagat
atgggtcagagttcatagttttgtacatcagcatttaactactctagcat
acatcgttgaaaataaatattttggccacagaattgttttgaccagaagt
cagttacccacgtgtctataaatctatctctaagcttacttgttctggtc
tagtctagtctagtctagtctagtctagtctagtgtaatctattttctta
cttttatacaatggccagattatcttagttactgtacttttatgtcttaa
aattcagcaccattggtcatttattgctctttcttttcaaagtttctaaa
acttagattgtataaattcatgtcggaaaaaagctgagatccttggttca
ccaacatggtaacacatcccactgaggctgagaccttggcatggatgcta
ccaagcctctagtcatttggatttggctgctgaaggtcatagagctagct
gatagaaaatggggcacagatagcaggtggccctgccagagcagctgaaa
gagatgactttcagttgacagtagatggtacatcatgaattcatggtggc
agcccagagaatgcttggtggcagcccagagtacctgtcagttccagggc
aggcagaagagattactgaaggttctgttttcaggtatggtcatttcaaa
caacaccatcaatgcttcaacaaggatggaaaagctgtactgaaagactg
gcagagaagatccaaagtatttgcgttggtgtgcatagagggagggtttg
ggagggaacagatacatttgaacccccgagacaacctgattcaagactat
caagggtgaatattatgttggattagattgtttgaatagatcatgggaat
gtcagccaacaaatttcctatttcctcctatttttgaaatccatgattaa
ggatatgttgggtaaatgtta
gaattcaaaggtattgtcctaggtgcaaagtttgggggattggttctaag
ctttttggggggccctaggagactcaacagtaacctaaataaactgagaa
tctccagggtatcttctaatggatatgttgcactcatatagtttccctgt
cccgtgcacactttttttttttaaattttaaaaggagccagaagagatgg
tgccttgcctgtctctgttctgtgatgagtgggagtcagaaggacagcta
gaagggctgagtctgcttgagctcagtggcataaaaccggaagaagtagt
tcgtggtattttaggcacagatttccaagctaaacccctgcttggaacca
tagcttgctatctgtgtgaacttggagagccatttttcaggtctcggtgt
ctgtacggctccatctggaatgctcacgctgctctggcctggcgcactgc
agccacttactggtcgcttcttttaagaatgaaacctgtatagcaattct
cagagtttaagggggaggcagaggaccgtgagtctggctgaagggtgaga
cctcccaaaagcacctctgaatcgatccttcagaatctttgtcatagatc
tacagaaacccagactgctgctttcttctctcaccttgcctctgggagct
acatggtgggctggctcaaggccacgtgtgatggtgaaataaaaggctga
agggaatttcctttcagtggtaatccacaatcgaatgccagaaaacaaaa
tgtgctcacactccctaacgagcacccacaggctctcacagtgaggccca
cgactagcgaccgtgtttaacactcagtctgatgtttaagggcagcaagc
gatatttatcctcttgctgtccttgggaagtcagttatcgacacatgaac
cctcacgtaagtgcttgactcggggggctgtaagaagctcagagtttgtc
ccagtacaacaagaaaggccttcgggtgcccagtcaggagcagccaaagg
cccgtgaacattgactttgcttcatctcaatagtggcagactccaatgtg
agggccaatgtggttatccaatcagttgggtaggtgttgtaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112969948_112970962
seq2: B6Ng01-297B24.b_47_1067 (reverse)

seq1  TAACATT--ACCAACATATCC-TAATCAATTGAATTTCAAAAATAGGAGG  47
      |||||||   ||||||||||| ||||||  || |||||||||||||||||
seq2  TAACATTTACCCAACATATCCTTAATCA--TGGATTTCAAAAATAGGAGG  48

seq1  AATTA-GAAATTTGTTGGCTGACA-TCCCATGATCTATTCAAACAATCT-  94
      || || |||||||||||||||||| |||||||||||||||||||||||| 
seq2  AAATAGGAAATTTGTTGGCTGACATTCCCATGATCTATTCAAACAATCTA  98

seq1  ATTCAACATAATATTCACCCTTGATAGTCTTGAATCAGGTTGTCTC-GGG  143
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCCAACATAATATTCACCCTTGATAGTCTTGAATCAGGTTGTCTCGGGG  148

seq1  GTTCAAATGTATCTGTTCCCT-CCAAACCCTCCCTCTATGCACACCAACG  192
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTCAAATGTATCTGTTCCCTCCCAAACCCTCCCTCTATGCACACCAACG  198

seq1  CAAATACTTTGGATCTTCTCTGCCAGTCTTTCAGTACAGCTTTTCCATCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTTGGATCTTCTCTGCCAGTCTTTCAGTACAGCTTTTCCATCC  248

seq1  TTGTTGAAGCATTGATGGTGTTGTTTGAAATGACCATACCTGAAAACAGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGCATTGATGGTGTTGTTTGAAATGACCATACCTGAAAACAGA  298

seq1  ACCTTCAGTAATCTCTTCTGCCTGCCCTGGAACTGACAGGTACTCTGGGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGTAATCTCTTCTGCCTGCCCTGGAACTGACAGGTACTCTGGGC  348

seq1  TGCCACCAAGCATTCTCTGGGCTGCCACCATGAATTCATGATGTACCATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAAGCATTCTCTGGGCTGCCACCATGAATTCATGATGTACCATC  398

seq1  TACTGTCAACTGAAAGTCATCTCTTTCAGCTGCTCTGGCAGGGCCACCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAACTGAAAGTCATCTCTTTCAGCTGCTCTGGCAGGGCCACCTG  448

seq1  CTATCTGTGCCCCATTTTCTATCAGCTAGCTCTATGACCTTCAGCAGCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGCCCCATTTTCTATCAGCTAGCTCTATGACCTTCAGCAGCCA  498

seq1  AATCCAAATGACTAGAGGCTTGGTAGCATCCATGCCAAGGTCTCAGCCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAATGACTAGAGGCTTGGTAGCATCCATGCCAAGGTCTCAGCCTC  548

seq1  AGTGGGATGTGTTACCATGTTGGTGAACCAAGGATCTCAGCTTTTTTCCG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATGTGTTACCATGTTGGTGAACCAAGGATCTCAGCTTTTTTCCG  598

seq1  ACATGAATTTATACAATCTAAGTTTTAGAAACTTTGAAAAGAAAGAGCAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATTTATACAATCTAAGTTTTAGAAACTTTGAAAAGAAAGAGCAA  648

seq1  TAAATGACCAATGGTGCTGAATTTTAAGACATAAAAGTACAGTAACTAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACCAATGGTGCTGAATTTTAAGACATAAAAGTACAGTAACTAAG  698

seq1  ATAATCTGGCCATTGTATAAAAGTAAGAAAATAGATTACACTAGACTAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGGCCATTGTATAAAAGTAAGAAAATAGATTACACTAGACTAGA  748

seq1  CTAGACTAGACTAGACTAGACTAGACCAGAACAAGTAAGCTTAGAGATAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAGACTAGACTAGACTAGACCAGAACAAGTAAGCTTAGAGATAG  798

seq1  ATTTATAGACACGTGGGTAACTGACTTCTGGTCAAAACAATTCTGTGGCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGACACGTGGGTAACTGACTTCTGGTCAAAACAATTCTGTGGCC  848

seq1  AAAATATTTATTTTCAACGATGTATGCTAGAGTAGTTAAATGCTGATGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTATTTTCAACGATGTATGCTAGAGTAGTTAAATGCTGATGTA  898

seq1  CAAAACTATGAACTCTGACCCATATCTTGCATAAAATACTAAAATTGACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTATGAACTCTGACCCATATCTTGCATAAAATACTAAAATTGACT  948

seq1  CAAATGAATTATAGACATAAAGTTGAGATCACCTGTAGGCACCAGAAGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATTATAGACATAAAGTTGAGATCACCTGTAGGCACCAGAAGCC  998

seq1  TACAAAAGAATGCAAGAGAATTC  1015
      |||||||||||||||||||||||
seq2  TACAAAAGAATGCAAGAGAATTC  1021

seq1: chr13_112856768_112857860
seq2: B6Ng01-297B24.g_69_1162

seq1  GAATTCAAAGGTATTGTCCTAGGTGCAAAGTTTGGGGGATTGGTTCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGTATTGTCCTAGGTGCAAAGTTTGGGGGATTGGTTCTAAG  50

seq1  CTTTTTGGGGGGCCCTAGGAGACTCAACAGTAACCTAAATAAACTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGGGGGCCCTAGGAGACTCAACAGTAACCTAAATAAACTGAGAA  100

seq1  TCTCCAGGGTATCTTCTAATGGATATGTTGCACTCATATAGTTTCCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGTATCTTCTAATGGATATGTTGCACTCATATAGTTTCCCTGT  150

seq1  CCCGTGCACACTTTTTTTTTTTAAATTTTAAAAGGAGCCAGAAGAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCACACTTTTTTTTTTTAAATTTTAAAAGGAGCCAGAAGAGATGG  200

seq1  TGCCTTGCCTGTCTCTGTTCTGTGATGAGTGGGAGTCAGAAGGACAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCCTGTCTCTGTTCTGTGATGAGTGGGAGTCAGAAGGACAGCTA  250

seq1  GAAGGGCTGAGTCTGCTTGAGCTCAGTGGCATAAAACCGGAAGAAGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTGAGTCTGCTTGAGCTCAGTGGCATAAAACCGGAAGAAGTAGT  300

seq1  TCGTGGTATTTTAGGCACAGATTTCCAAGCTAAACCCCTGCTTGGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTATTTTAGGCACAGATTTCCAAGCTAAACCCCTGCTTGGAACCA  350

seq1  TAGCTTGCTATCTGTGTGAACTTGGAGAGCCATTTTTCAGGTCTCGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCTATCTGTGTGAACTTGGAGAGCCATTTTTCAGGTCTCGGTGT  400

seq1  CTGTACGGCTCCATCTGGAATGCTCACGCTGCTCTGGCCTGGCGCACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACGGCTCCATCTGGAATGCTCACGCTGCTCTGGCCTGGCGCACTGC  450

seq1  AGCCACTTACTGGTCGCTTCTTTTAAGAATGAAACCTGTATAGCAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTACTGGTCGCTTCTTTTAAGAATGAAACCTGTATAGCAATTCT  500

seq1  CAGAGTTTAAGGGGGAGGCAGAGGACCGTGAGTCTGGCTGAAGGGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTAAGGGGGAGGCAGAGGACCGTGAGTCTGGCTGAAGGGTGAGA  550

seq1  CCTCCCAAAAGCACCTCTGAATCGATCCTTCAGAATCTTTGTCATAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAAAGCACCTCTGAATCGATCCTTCAGAATCTTTGTCATAGATC  600

seq1  TACAGAAACCCAGACTGCTGCTTTCTTCTCTCACCTTGCCTCTGGGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAACCCAGACTGCTGCTTTCTTCTCTCACCTTGCCTCTGGGAGCT  650

seq1  ACATGGTGGGCTGGCTCAAGGCCACGTGTGATGGTGAAATAAAAGGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGGCTGGCTCAAGGCCACGTGTGATGGTGAAATAAAAGGCTGA  700

seq1  AGGGAATTTCCTTTCAGTGGTAATCCACAATCGAATGCCAGAAAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTTCCTTTCAGTGGTAATCCACAATCGAATGCCAGAAAACAAAA  750

seq1  TGTGCTCACACTCCCTAACGAGCACCCACAGGCTCTCACAGTGAGGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCACACTCCCTAACGAGCACCCACAGGCTCTCACAGTGAGGCCCA  800

seq1  CGACTAGCGACCGTG-TTAACACTCAGTCTGATGTTTAAGGGCAGCAAGC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGACTAGCGACCGTGTTTAACACTCAGTCTGATGTTTAAGGGCAGCAAGC  850

seq1  GATATTTATCCTCTTGCTGTCCTTGGGAAGTCAGTTATCGACACATGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTATCCTCTTGCTGTCCTTGGGAAGTCAGTTATCGACACATGAAC  900

seq1  CCTCACGTAAGTGCTTGACTC-GGGGGCTGTAAGAAGCTCAGAGTTTGTC  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTCACGTAAGTGCTTGACTCGGGGGGCTGTAAGAAGCTCAGAGTTTGTC  950

seq1  CCAGTAC-ACAAGAAAGGCCTTCGGGTG-CCAGCCAGGAGCAGCC-AAGG  995
      ||||||| |||||||||||||||||||| |||| ||||||||||| ||||
seq2  CCAGTACAACAAGAAAGGCCTTCGGGTGCCCAGTCAGGAGCAGCCAAAGG  1000

seq1  CCGTGGAACA-TGACCTTGCCTCATCTC-ATAGTTGGCAGGACTTCCCAT  1043
      ||   ||||| |||| |||| ||||||| |||| ||||| ||||  ||| 
seq2  CCCGTGAACATTGACTTTGCTTCATCTCAATAG-TGGCA-GACT--CCAA  1046

seq1  GGTGAGGGCAAATGGTGGTTATCCAAACCAGTGGGTAAGGTGTTGTAACT  1093
       |||||||| ||| |||||||||| || |||| ||  |||||||||||||
seq2  TGTGAGGGCCAAT-GTGGTTATCC-AATCAGTTGGGTAGGTGTTGTAACT  1094