BAC Information

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BAC

Clone NameB6Ng01-297F07
Chromosome13 (Build37)
Map Location 101,686,657 - 101,809,883
singlet/doubletdoublet
Overlap geneLOC619917, EG619937
Upstream geneMccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297F07.bB6Ng01-297F07.g
ACCGA092712GA092713
length1,1551,109
definitionB6Ng01-297F07.b B6Ng01-297F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,686,657 - 101,687,797)(101,808,756 - 101,809,883)
sequence
gaattctatccattgtgaattgatatttttgtaagttatttgctaagggc
ctcatcttattcctttgcaagtagatattcacattgaagagactggtagc
ctgccctctctgttttttttctccaaaaatttctgaaaatttcttaaaat
taagactaatccagtgctttgggccttttcatctcagccttggaaataag
tattttcccaagaaaccctggttgcttttattgaagaatggtattcagaa
accaatatttagattaggggtgcatttaagtactgaaaattgttgttctc
tgcactgcaaacaatttttagtgaaagtcctgttgcattatctttctcct
cccggtgctcattatgcctagtttaatgtttttgttggtttgttttataa
aattaattttccagctagaaaatgtggattattaattttttcttagcaac
cagatcttaatatttgcctctaccgcctaacatttaaagaaagacttaat
tatccttttctttatgagtgtctgtttgaatatacgttactatgctctgt
gtgtgtgtgcacatgcgtgcgtttgtgtatgtgtgtgcctgtagatgcca
aaagatgataaaatcccctggaactggagttatgcgcagttgtaagctgt
ctgatgtgggtgttgggagctgaactctgggtctttggaagaaccagctt
tctgagcctcttatcagcatttagaaaaatccttatttatgcttgagatt
ataatataatgtaattacattatttatcccttcctccttctccttccaaa
ccttccttgctctctctcaaatttcatggcctctctcgtttttttttctt
ttttttttttgttttatttgttaaacacatacacacatacatatatattt
ttaagcattaacctggtcagtctgttcaatgttacttaatatgcatgttt
tcaggactgaccatttgatgtttaatgaatcaattgtgcgctcttccccc
gggggaaaatgaatcaccccctccccacctcccagaaactcctctagttt
cctgtagctccttggtgtaagggcctgaagttcgtggccgttcctcccgc
ccactcttgacaagtccgttgttgcgtcattgtcagctcatgtcaggcag
ccatg
gaattcagccccagactggcacttctgagtcagccatcctcatggatgga
gcagctactagactctcttagtccgccattgttgaaccacctaaactgca
ttgtgttagccaatcaaacagtcctttcactatatatttatctatttatc
tgctcctccagagcgacctgactaatacaatatctagcataaaggaggca
catgatattcaccttgctctccgcatcctgtacactttgaattctctaag
tttgaaaagagagaaaagacagactgtcccctactatggaaactgaaagt
gttagtccttcatcacaagggcatatctgtgaagcataagcttcatgggg
cagaaaaccatattagactcagtccagaaagctctctcttactgaaagca
ctcattcttcatttcgttgtctctgtgattacgcctctcttctctactct
ccctctcgtgtgatgaaggcagcagcagtagctacaaggccaaacttgtg
tggtcctgaagcttgataatgcatctcagtttaaatattcataaaccaga
catctcttaagaaattactatctagacacagccattgcagtacattgagc
tccatagagacagcgccagggcaagcgcgagccggacgggcactgggcga
ctctgtgcctctcggaggaaaatcaactaaacatgggcaaaggagatcct
aagaagctgagaggcaaaatgtcctcatatgcattctttgtgcaaacttg
ccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcag
agttctccaagaagtgctcagagaggtggaagaccatgtctgctaaagaa
aaggggaaatttgaagatatggcaatagctgacaaggctcgttatgaaga
gaaatgaaaacctacatcccccccaaaagggagaccaaaagaagttcaag
gaccccaatgcacccagaggctctttcggcttcttcttgtctgttcttgg
taccgcccaaatcaaaggcgagcatctggcttatcatgtgatgtgcaagg
aacgaggagagatgttgacacactgcagcagatgacagcagtctatgaaa
gaagcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101686657_101687797
seq2: B6Ng01-297F07.b_48_1202

seq1  GAATTCTATCCATTGTGAATTGATATTTTTGTAAGTTATTTGCTAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCATTGTGAATTGATATTTTTGTAAGTTATTTGCTAAGGGC  50

seq1  CTCATCTTATTCCTTTGCAAGTAGATATTCACATTGAAGAGACTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTATTCCTTTGCAAGTAGATATTCACATTGAAGAGACTGGTAGC  100

seq1  CTGCCCTCTCTGTTTTTTTTCTCCAAAAATTTCTGAAAATTTCTTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTCTGTTTTTTTTCTCCAAAAATTTCTGAAAATTTCTTAAAAT  150

seq1  TAAGACTAATCCAGTGCTTTGGGCCTTTTCATCTCAGCCTTGGAAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAATCCAGTGCTTTGGGCCTTTTCATCTCAGCCTTGGAAATAAG  200

seq1  TATTTTCCCAAGAAACCCTGGTTGCTTTTATTGAAGAATGGTATTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCAAGAAACCCTGGTTGCTTTTATTGAAGAATGGTATTCAGAA  250

seq1  ACCAATATTTAGATTAGGGGTGCATTTAAGTACTGAAAATTGTTGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATTTAGATTAGGGGTGCATTTAAGTACTGAAAATTGTTGTTCTC  300

seq1  TGCACTGCAAACAATTTTTAGTGAAAGTCCTGTTGCATTATCTTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCAAACAATTTTTAGTGAAAGTCCTGTTGCATTATCTTTCTCCT  350

seq1  CCCGGTGCTCATTATGCCTAGTTTAATGTTTTTGTTGGTTTGTTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGCTCATTATGCCTAGTTTAATGTTTTTGTTGGTTTGTTTTATAA  400

seq1  AATTAATTTTCCAGCTAGAAAATGTGGATTATTAATTTTTTCTTAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTCCAGCTAGAAAATGTGGATTATTAATTTTTTCTTAGCAAC  450

seq1  CAGATCTTAATATTTGCCTCTACCGCCTAACATTTAAAGAAAGACTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTAATATTTGCCTCTACCGCCTAACATTTAAAGAAAGACTTAAT  500

seq1  TATCCTTTTCTTTATGAGTGTCTGTTTGAATATACGTTACTATGCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTTCTTTATGAGTGTCTGTTTGAATATACGTTACTATGCTCTGT  550

seq1  GTGTGTGTGCACATGCGTGCGTTTGTGTATGTGTGTGCCTGTAGATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCACATGCGTGCGTTTGTGTATGTGTGTGCCTGTAGATGCCA  600

seq1  AAAGATGATAAAATCCCCTGGAACTGGAGTTATGCGCAGTTGTAAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATAAAATCCCCTGGAACTGGAGTTATGCGCAGTTGTAAGCTGT  650

seq1  CTGATGTGGGTGTTGGGAGCTGAACTCTGGGTCTTTGGAAGAACCAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGGGTGTTGGGAGCTGAACTCTGGGTCTTTGGAAGAACCAGCTT  700

seq1  TCTGAGCCTCTTATCAGCATTTAGAAAAATCCTTATTTATGCTTGAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTCTTATCAGCATTTAGAAAAATCCTTATTTATGCTTGAGATT  750

seq1  ATAATATAATGTAATTACATTATTTATCCCTTCCTCCTTCTCCTTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAATGTAATTACATTATTTATCCCTTCCTCCTTCTCCTTCCAAA  800

seq1  CCTTCCTTGCTCTCTCTCAAA-TTCATGGCCTCTCTCGTTTTTTTTTCTT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTTCCTTGCTCTCTCTCAAATTTCATGGCCTCTCTCGTTTTTTTTTCTT  850

seq1  TTTTTTTTTGTTTTTATTTGTTAAACACATACACACATACATATATATTT  899
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTTTATTTGTTAAACACATACACACATACATATATATTT  900

seq1  TTAAGCATTAACCTGGTCAGTCTGTTCAATGTTACTT-ATATGCATGTTT  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAGCATTAACCTGGTCAGTCTGTTCAATGTTACTTAATATGCATGTTT  950

seq1  TCAGGACTGACCATTTGATGTTTTATG-ATCAATTGGTGCGCTCT--CCC  995
      ||||||||||||||||||||||| ||| ||||||| |||||||||  |||
seq2  TCAGGACTGACCATTTGATGTTTAATGAATCAATT-GTGCGCTCTTCCCC  999

seq1  CTGGGGAAGATGA-----TCCCTCCC--ACTCCCAGAA--TCCTCTAGTT  1036
      | |||||| ||||      |||||||   |||||||||  ||||||||||
seq2  CGGGGGAAAATGAATCACCCCCTCCCCACCTCCCAGAAACTCCTCTAGTT  1049

seq1  TCCTGTAGTTCCTT-GTGTA--GGGCTGAGGTTTCGTGG-CGTTTCTCCC  1082
      |||||||| ||||| |||||  || |||| | ||||||| |||| |||||
seq2  TCCTGTAGCTCCTTGGTGTAAGGGCCTGAAG-TTCGTGGCCGTTCCTCCC  1098

seq1  GCCCACTC-TGGCAAGTCTGTTGTTGCTGTCTTTGTTCAGCTCATGTTCA  1131
      |||||||| || |||||| |||||||| ||| ||| |||||||||| |||
seq2  GCCCACTCTTGACAAGTCCGTTGTTGC-GTCATTG-TCAGCTCATG-TCA  1145

seq1  GGCAGCCATG  1141
      ||||||||||
seq2  GGCAGCCATG  1155

seq1: chr13_101808756_101809883
seq2: B6Ng01-297F07.g_66_1174 (reverse)

seq1  GCAGCCTTCTTCTCATAGGGCTGCTTGTCATCTGCTGCAGTGTTGTTCCA  50
      |||| |||||| ||||| | |||| ||||||||||||||||||   || |
seq2  GCAGGCTTCTT-TCATA-GACTGC-TGTCATCTGCTGCAGTGT--GTCAA  45

seq1  CATCTCTCCTCGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCT  100
      |||||||||||| ||| |||| |||||||  || ||||||||| ||||||
seq2  CATCTCTCCTCG-TTCCTTGC-ACATCAC--AT-GATAAGCCA-GATGCT  89

seq1  CGCCTTTGATTTTGGGGCGGTACCCAGAACAGAACAAGAAGAAGGCCGAA  150
      ||||||||||||  |||||||||| ||||||| |||||||||| ||||||
seq2  CGCCTTTGATTT--GGGCGGTACCAAGAACAG-ACAAGAAGAA-GCCGAA  135

seq1  GGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCT  200
       || ||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AGA-GCCTC-TGGGTGCATTGGGGTCCTTGAACTTC-TTTTGGTCTCCCT  182

seq1  TTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGTCAG  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGGGGGGGATGTAGGTTTTCATTTCTC-TTCATAACGAGCCTTGTCAG  231

seq1  CTATTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTC  281

seq1  CACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATC  331

seq1  CGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCAT  381

seq1  ATGAGGACATTTTGCCTCTCAGCTTCTTAGGATCTCCTTTGCCCATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACATTTTGCCTCTCAGCTTCTTAGGATCTCCTTTGCCCATGTTT  431

seq1  AGTTGATTTTCCTCCGAGAGGCACAGAGTCGCCCAGTGCCCGTCCGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTTCCTCCGAGAGGCACAGAGTCGCCCAGTGCCCGTCCGGCTC  481

seq1  GCGCTTGCCCTGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTGCCCTGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTG  531

seq1  TGTCTAGATAGTAATTTCTTAAGAGATGTCTGGTTTATGAATATTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGATAGTAATTTCTTAAGAGATGTCTGGTTTATGAATATTTAAAC  581

seq1  TGAGATGCATTATCAAGCTTCAGGACCACACAAGTTTGGCCTTGTAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCATTATCAAGCTTCAGGACCACACAAGTTTGGCCTTGTAGCTA  631

seq1  CTGCTGCTGCCTTCATCACACGAGAGGGAGAGTAGAGAAGAGAGGCGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCCTTCATCACACGAGAGGGAGAGTAGAGAAGAGAGGCGTAA  681

seq1  TCACAGAGACAACGAAATGAAGAATGAGTGCTTTCAGTAAGAGAGAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGACAACGAAATGAAGAATGAGTGCTTTCAGTAAGAGAGAGCTT  731

seq1  TCTGGACTGAGTCTAATATGGTTTTCTGCCCCATGAAGCTTATGCTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTGAGTCTAATATGGTTTTCTGCCCCATGAAGCTTATGCTTCAC  781

seq1  AGATATGCCCTTGTGATGAAGGACTAACACTTTCAGTTTCCATAGTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCCCTTGTGATGAAGGACTAACACTTTCAGTTTCCATAGTAGGG  831

seq1  GACAGTCTGTCTTTTCTCTCTTTTCAAACTTAGAGAATTCAAAGTGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTGTCTTTTCTCTCTTTTCAAACTTAGAGAATTCAAAGTGTACA  881

seq1  GGATGCGGAGAGCAAGGTGAATATCATGTGCCTCCTTTATGCTAGATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCGGAGAGCAAGGTGAATATCATGTGCCTCCTTTATGCTAGATATT  931

seq1  GTATTAGTCAGGTCGCTCTGGAGGAGCAGATAAATAGATAAATATATAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTCAGGTCGCTCTGGAGGAGCAGATAAATAGATAAATATATAGT  981

seq1  GAAAGGACTGTTTGATTGGCTAACACAATGCAGTTTAGGTGGTTCAACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTGTTTGATTGGCTAACACAATGCAGTTTAGGTGGTTCAACAA  1031

seq1  TGGCGGACTAAGAGAGTCTAGTAGCTGCTCCATCCATGAGGATGGCTGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGACTAAGAGAGTCTAGTAGCTGCTCCATCCATGAGGATGGCTGAC  1081

seq1  TCAGAAGTGCCAGTCTGGGGCTGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  TCAGAAGTGCCAGTCTGGGGCTGAATTC  1109