BAC Information

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BAC

Clone NameB6Ng01-297I16
Chromosome13 (Build37)
Map Location 62,722,600 - 62,849,235
singlet/doubletdoublet
Overlap geneLOC100041493, LOC630857, EG630978, EG435366
Upstream geneEG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503
Downstream geneLOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297I16.bB6Ng01-297I16.g
ACCGA092874GA092875
length1,2001,141
definitionB6Ng01-297I16.b B6Ng01-297I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,722,600 - 62,723,801)(62,848,105 - 62,849,235)
sequence
gaattccacatatgatgtcatcaataagtactttttaggttcagccccga
ggttatactttgaacaatttaatgggggacaggaccttgcaagtttagcc
actgaggctgatggagatttacagagcaaaactgtcttctagtcaataat
acaagatctagaaaagagttttaaaagatagatccatgctacaactctcc
catacataaaggacagagaacacaaatacagaaaatatcaaggacacatc
acctaacagcactgtagttacggttctaatatgaacatgcctgctgatct
tttctaacctcagaataagactgtttgaaggttctgccccactcacccac
ccatccatccacccatccatccatccaatcatccaaccatccatccatcc
atccatccatccatccatccatccaaccatccattcattcaaggcaactt
tttaagtgtttaacttggggctggagagatggctcagcatatctggccac
tggttctcacccagccacgggaagtgcccacttccccagcttcaaatgtt
catgcccctgctctttcaggttagcatagagctgaacctccattatggca
gaaagtactcagaagaaccctcctattctcctgattggcctgcccggacg
ccctgattggccagtgattcttgagtgacataagcatgctccttagggtt
gaagtgtgttaaaggcacacagtatacaccttcaatgctcagaattctag
ttcaggaactttgaaagtagtgtagtcacagcccagaaaggacaggacaa
aaagaagtagataacttcactgctttgacagtatgtaatattaagaatga
acagtgagggatagcaagatggcttagcaggtaagagcacggatagtttc
tttccgaaggtcctgagttcaaatcccagcaaccacatagtgggttcaca
accatcagtaatgagatctaatatcctcttcttgctgtgtctgaagtcac
ctacagtgtacttacatataataataaataaatctttttttaaaaaaaga
tgaacagtgaagcaatcagatctgaataaaaattgaggttactatgaaca
agattactacatgagtctaccaataacattgtattaaccaatctagtaaa
accatgtgtccaattcgaactcaaaggaaagggggaggcgacttgtagga

gaattccttggggaggggagcctctgcagttgtcaccattggatgctgtg
gtgctgataccgtcactgtgcagtgtgcacacagaggcttttggtgtgca
gtttgaggacaggtagggaaacttgaggtctggtttgtagaagttctaaa
tgttctattccacacttcagtttcattggatacattttacaaatagtttg
ggaactggtagaatggaggtgctgatcatctgtgagccttacttcattag
aatgctttttactttctactcctaccagtcccaatggcatgattcaggca
aattcagctccatggtacaaagagagtttctgtgatacagaggtgtttga
tgtgttcatcatgttgagctgtcaatagggcagattctgcattttgtttc
ataagtcatgtgacaggaagcagtcattaaattattcttcaactttgttt
tttgtgtgggcatcagaggttctgtgtttgactgaaaccacaacagccta
tgaggagttataaagccatagcccacctttctgatcacttccatttacag
agggaactctacagaatggggcctctctatatggaagaaagatcagaagt
aggtggaggggcagaaatataacaagttaggagttactttgagttatttt
tcctgtgagttttgagtttgtttgtttttttctaagcaattacaatcaca
gttaacatcgttgaaactctaatttttcctagtttgagattcctcacaac
ttttgaagaagacttgaatatatattgggcattttattcttggctttttc
tctacacacagtggtatgtataagggcatgtatgaggtagaagactcagc
agtagggatagcccatgattattgggtctcagaataacaagtttactaga
gatggtccacgtgccttcttctaccctggtccctataactcacatctaaa
aactgagcttcaggttctctgcactaatttattcaacttctttgtaattt
aaatttgttctcataatctgtgtaccatctttcctttttttcaagaaaag
actcttgtgactgggcaggtacactcaaggaagccatttttgctgggtga
cctgagttcagattaccaacacccatgtttactactctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62722600_62723801
seq2: B6Ng01-297I16.b_52_1251

seq1  GAATTCCACATATGATGTCATCAATAAGTACTTTTTAGGTTCAGCCCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATATGATGTCATCAATAAGTACTTTTTAGGTTCAGCCCCGA  50

seq1  GGTTATACTTTGAACAATTTAATGGGGGACAGGACCTTGCAAGTTTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATACTTTGAACAATTTAATGGGGGACAGGACCTTGCAAGTTTAGCC  100

seq1  ACTGAGGCTGATGGAGATTTACAGAGCAAAACTGTCTTCTAGTCAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTGATGGAGATTTACAGAGCAAAACTGTCTTCTAGTCAATAAT  150

seq1  ACAAGATCTAGAAAAGAGTTTTAAAAGATAGATCCATGCTACAACTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTAGAAAAGAGTTTTAAAAGATAGATCCATGCTACAACTCTCC  200

seq1  CATACATAAAGGACAGAGAACACAAATACAGAAAATATCAAGGACACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAAGGACAGAGAACACAAATACAGAAAATATCAAGGACACATC  250

seq1  ACCTAACAGCACTGTAGTTACGGTTCTAATATGAACATGCCTGCTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAGCACTGTAGTTACGGTTCTAATATGAACATGCCTGCTGATCT  300

seq1  TTTCTAACCTCAGAATAAGACTGTTTGAAGGTTCTGCCCCACTCACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACCTCAGAATAAGACTGTTTGAAGGTTCTGCCCCACTCACCCAC  350

seq1  CCATCCATCCACCCATCCATCCATCCAATCATCCAACCATCCATCCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCACCCATCCATCCATCCAATCATCCAACCATCCATCCATCC  400

seq1  ATCCATCCATCCATCCATCCATCCAACCATCCATTCATTCAAGGCAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATCCATCCATCCATCCAACCATCCATTCATTCAAGGCAACTT  450

seq1  TTTAAGTGTTTAACTTGGGGCTGGAGAGATGGCTCAGCATATCTGGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTTTAACTTGGGGCTGGAGAGATGGCTCAGCATATCTGGCCAC  500

seq1  TGGTTCTCACCCAGCCACGGGAAGTGCCCACTTCCCCAGCTTCAAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCACCCAGCCACGGGAAGTGCCCACTTCCCCAGCTTCAAATGTT  550

seq1  CATGCCCCTGCTCTTTCAGGTTAGCATAGAGCTGAACCTCCATTATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCCTGCTCTTTCAGGTTAGCATAGAGCTGAACCTCCATTATGGCA  600

seq1  GAAAGTACTCAGAAGAACCCTCCTATTCTCCTGATTGGCCTGCCCGGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACTCAGAAGAACCCTCCTATTCTCCTGATTGGCCTGCCCGGACG  650

seq1  CCCTGATTGGCCAGTGATTCTTGAGTGACATAAGCATGCTCCTTAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTGGCCAGTGATTCTTGAGTGACATAAGCATGCTCCTTAGGGTT  700

seq1  GAAGTGTGTTAAAGGCACACAGTATACACCTTCAATGCTCAGAATTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGTTAAAGGCACACAGTATACACCTTCAATGCTCAGAATTCTAG  750

seq1  TTCAGGAACTTTGAAAGTAGTGTAGTCACAGCCCAGAAAGGACAGGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAACTTTGAAAGTAGTGTAGTCACAGCCCAGAAAGGACAGGACAA  800

seq1  AAAGAAGTAGATAACTTCACTGCTTTGACAGTATGTAATATTAAGAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTAGATAACTTCACTGCTTTGACAGTATGTAATATTAAGAATGA  850

seq1  ACAGTGAGGGATAGCAAGATGGCTTAGCAGGTAAGAGCACGGATAGTT--  898
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ACAGTGAGGGATAGCAAGATGGCTTAGCAGGTAAGAGCACGGATAGTTTC  900

seq1  CTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATAGT-GGTTCACA  947
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATAGTGGGTTCACA  950

seq1  ACCATCAGTAATGAGATCTAATATCCTCTTC-TGCTGTGTCTGAAGTCAC  996
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCATCAGTAATGAGATCTAATATCCTCTTCTTGCTGTGTCTGAAGTCAC  1000

seq1  CTACAGTGTACTTACATATAATAATAAATAAATCTTTTTTTAAAAAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTACAGTGTACTTACATATAATAATAAATAAATCTTTTTTTAAAAAAAG-  1049

seq1  ATGAACAGTGAGGCAATCAAGAATCTGAATAAAAATTTGAAGTTACTATG  1096
      ||||||||||| |||||||   ||||||||||||| |||| |||||||||
seq2  ATGAACAGTGAAGCAATCA--GATCTGAATAAAAA-TTGAGGTTACTATG  1096

seq1  AAACCAAGA-TACTACATGAGTCCTACCAAATACATTGTATTACCAAATC  1145
      ||  ||||| |||||||||||| |||||||  ||||||||||| | ||||
seq2  AA--CAAGATTACTACATGAGT-CTACCAATAACATTGTATTAACCAATC  1143

seq1  TAGGTAAAACAATGTGGCCCA-TCG-ACTCAGAGGAGAAGGGGGAGGCGG  1193
      || ||||||| ||||| || | ||| ||||| |||| |||||||||||| 
seq2  TA-GTAAAACCATGTGTCCAATTCGAACTCAAAGGA-AAGGGGGAGGCGA  1191

seq1  ACTGTAGGA  1202
        |||||||
seq2  CTTGTAGGA  1200

seq1: chr13_62848105_62849235
seq2: B6Ng01-297I16.g_70_1210 (reverse)

seq1  TGCAG-GTAGTAAACATGGGTGTTGGT-ATCTGAACTCAGGTCACCCCAA  48
      ||||| ||||||||||||||||||||| |||||||||||||||||||  |
seq2  TGCAGAGTAGTAAACATGGGTGTTGGTAATCTGAACTCAGGTCACCC--A  48

seq1  GCAAAA--TGCTTCC-TGAGTG-ACCTGCCCAGGTCAC-AGAGTCTTTTC  93
      ||||||   |||||| |||||| ||||||||| ||||| |||||||||||
seq2  GCAAAAATGGCTTCCTTGAGTGTACCTGCCCA-GTCACAAGAGTCTTTTC  97

seq1  TTGAAAAAAAGGAAAAGAT-GTACACAGATTAATGAGAACAAAAATTTAA  142
      |||||||||||| |||||| ||||||||||| ||||||||  ||||||||
seq2  TTGAAAAAAAGG-AAAGATGGTACACAGATT-ATGAGAAC--AAATTTAA  143

seq1  ATAACAAAGAAG-TGAATAAATTAGTGCAGAGAACCTGAAGCTCAGTTTT  191
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGAAGTTGAATAAATTAGTGCAGAGAACCTGAAGCTCAGTTTT  193

seq1  TAGATGTGAGTTATA-GGACCAGGGTAGA--GAGGCACGTGGACCATCTC  238
      ||||||||||||||| |||||||||||||   ||||||||||||||||||
seq2  TAGATGTGAGTTATAGGGACCAGGGTAGAAGAAGGCACGTGGACCATCTC  243

seq1  TAGTAA--CTGTTA-TCTGAGACCCAATAATCAT-GGCTATCCCTACTGC  284
      ||||||   ||||| ||||||||||||||||||| |||||||||||||||
seq2  TAGTAAACTTGTTATTCTGAGACCCAATAATCATGGGCTATCCCTACTGC  293

seq1  TGAGTCTTCTACCTCATACATGCCCTTATACATACCACTGTGTGTAGAGA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTCTACCTCATACATGCCCTTATACATACCACTGTGTGTAGAGA  343

seq1  AAAAGCCAAGAATAAAATGCCCAATATATATTCAAGTCTTCTTCAAAAGT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAGAATAAAATGCCCAATATATATTCAAGTCTTCTTCAAAAGT  393

seq1  TGTGAGGAATCTC-AACTAGGAAAAATTAGAGTTTCAACGATGTTAACTG  433
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAATCTCAAACTAGGAAAAATTAGAGTTTCAACGATGTTAACTG  443

seq1  TGATTGTAATTGCTTAGAAAAAAACAAACAAACTCAAAACTCACAGGAAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTAATTGCTTAGAAAAAAACAAACAAACTCAAAACTCACAGGAAA  493

seq1  AATAACTCAAAGTAACTCCTAACTTGTTATATTTCTGCCCCTCCACCTAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCAAAGTAACTCCTAACTTGTTATATTTCTGCCCCTCCACCTAC  543

seq1  TTCTGATCTTTCTTCCATATAGAGAGGCCCCATTCTGTAGAGTTCCCTCT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTTTCTTCCATATAGAGAGGCCCCATTCTGTAGAGTTCCCTCT  593

seq1  GTAAATGGAAGTGATCAGAAAGGTGGGCTATGGCTTTATAACTCCTCATA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGAAGTGATCAGAAAGGTGGGCTATGGCTTTATAACTCCTCATA  643

seq1  GGCTGTTGTGGTTTCAGTCAAACACAGAACCTCTGATGCCCACACAAAAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGTGGTTTCAGTCAAACACAGAACCTCTGATGCCCACACAAAAA  693

seq1  ACAAAGTTGAAGAATAATTTAATGACTGCTTCCTGTCACATGACTTATGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGAAGAATAATTTAATGACTGCTTCCTGTCACATGACTTATGA  743

seq1  AACAAAATGCAGAATCTGCCCTATTGACAGCTCAACATGATGAACACATC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGCAGAATCTGCCCTATTGACAGCTCAACATGATGAACACATC  793

seq1  AAACACCTCTGTATCACAGAAACTCTCTTTGTACCATGGAGCTGAATTTG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTCTGTATCACAGAAACTCTCTTTGTACCATGGAGCTGAATTTG  843

seq1  CCTGAATCATGCCATTGGGACTGGTAGGAGTAGAAAGTAAAAAGCATTCT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCATGCCATTGGGACTGGTAGGAGTAGAAAGTAAAAAGCATTCT  893

seq1  AATGAAGTAAGGCTCACAGATGATCAGCACCTCCATTCTACCAGTTCCCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTAAGGCTCACAGATGATCAGCACCTCCATTCTACCAGTTCCCA  943

seq1  AACTATTTGTAAAATGTATCCAATGAAACTGAAGTGTGGAATAGAACATT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTGTAAAATGTATCCAATGAAACTGAAGTGTGGAATAGAACATT  993

seq1  TAGAACTTCTACAAACCAGACCTCAAGTTTCCCTACCTGTCCTCAAACTG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTCTACAAACCAGACCTCAAGTTTCCCTACCTGTCCTCAAACTG  1043

seq1  CACACCAAAAGCCTCTGTGTGCACACTGCACAGTGACGGTATCAGCACCA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAAAGCCTCTGTGTGCACACTGCACAGTGACGGTATCAGCACCA  1093

seq1  CAGCATCCAATGGTGACAACTGCAGAGGCTCCCCTCCCCAAGGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAATGGTGACAACTGCAGAGGCTCCCCTCCCCAAGGAATTC  1141