BAC Information

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BAC

Clone NameB6Ng01-297N21
Chromosome13 (Build37)
Map Location 100,983,022 - 100,984,149
singlet/doubletsinglet
Overlap geneNaip5
Upstream geneZfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1
Downstream geneBirc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297N21.bB6Ng01-297N21.g
ACCGA093122GA093123
length9891,115
definitionB6Ng01-297N21.b B6Ng01-297N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagaccagcctacactacatgaaactctcttcctcaaaatgtgt
gtgtgcaataatccttctgcatccatcccagggtctgacttaaacatgta
aggagacttaactaatgactaaggacagaggctgtgcttaatgctctttg
aggaccattcttgttgtacatggtacaattttgagtactcacacagtgct
ccccatagcgaggatgcatatactgcacatgtactgtccagacatacact
ctttatgtgtgaggttaactctttcatgtgtagagtattcttccttcaat
caacattgagaggatttttttggacctcaatgataataaagtggcaaatc
ttgattcaagaaccagtttttttttaattgggtatttatttcatttacat
ttccaatgctatcccaaaagtcccccacacgctcacccacccacccattc
ccacttcttggccctgtcattcccctgtactgaggcatataaagtttgca
agaccaatgggcctctctttatagtgatggcctactaggccattttctga
ttcatatgcagctagagacacgagctccaggggggtactgcttagttcat
attgttgttccacctataggattgcagatccctttagctccgtgggtact
ttctctagctcctccattgggggccctgtggtccatccaatagctgactg
ggagcatccacttctgtgtttgctaggccctggtatagtctcacaagaga
cagctatatctgggtcctttcagcaaaatcttgctagtgtatgcattggt
gtcagcgtttggaagctgatttatgagatgaatccccgggtatggcaggc
tctagatggttccatcctttcgtcacagctccaatgtaactcctttccat
gggtgttttgttcccaattctaagaagggcaaagtgtccaacacttttgg
tcttcattctttcttgagtttcatgtgttttgcaaattg
gaattctctacatgatgttttagagatcaaaccttgaaagcatcaaacag
cagcctggttgatagaaaacgacctggacaaacagaaaggggaagcagac
acaaggaagtcaaaaacagggagttgcagttgtctgtacaatgtactttt
cttctgtctaacaggaggacatatgtcagggcagagcctaggtatggacc
agggtacagtacaggggactgagaaaatgtgttaacaatgtctcccttta
tgcagagaagggaaggtgacagtccttaaagctgtcctctcactggctac
tatagagccttccacctatagctcagaagggactccctggttactcaaag
cagggctctgaaggaaatggagctaaactcatggcgactttacaagtgaa
gatctagtacagcttttgtttcattattcactatgtaaccacttttccct
tctatggggaaaattagagtagacttcacccagaatcatgttatagcttg
agtgtaaagaaagagggactaagaaagtgtttcttctgtgtcctgaataa
ggatcttcagtgatagtcagggggtatttctcattccctgaataaatata
cttctggaagaactggagaacatctcagcctccccccccccccccccggc
ctgctgtcctctggttttcttgattttccatgtcacattatatcattatc
tgttgctatggtgtgtataagtgcagttgcatgactgtaaagttgaaaca
ttgaccaagagtaagctgtcagttgtccatggagagaagggcactgttac
cacactgagatgactcagcaggtgaggccaatgatctttggtcatgtgtg
ctactgtgcatataaggcacagtcacagtgctctatgatcacatgtgcta
ttttgcatataaaggaacaaacacatcttgggtgaaaatagacaaaccta
gcttattgtataggatttccccacatgaaatgtctagttgcaaagcagct
atggtgactgagagagtgcagtggtcatctgtgaggggtgtgaggcactg
cctgggaaatgcaacaactcagttgggtctggagtctgtgtctagcctag
tgactgctcattgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100983022_100984149
seq2: B6Ng01-297N21.g_68_1182

seq1  GAATTCTCTACATGATGTTTTAGAGATCAAACCTTGAAAGCATCAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACATGATGTTTTAGAGATCAAACCTTGAAAGCATCAAACAG  50

seq1  CAGCCTGGTTGATAGAAAACGACCTGGACAAACAGAAAGGGGAAGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTTGATAGAAAACGACCTGGACAAACAGAAAGGGGAAGCAGAC  100

seq1  ACAAGGAAGTCAAAAACAGGGAGTTGCAGTTGTCTGTACAATGTACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGTCAAAAACAGGGAGTTGCAGTTGTCTGTACAATGTACTTTT  150

seq1  CTTCTGTCTAACAGGAGGACATATGTCAGGGCAGAGCCTAGGTATGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTAACAGGAGGACATATGTCAGGGCAGAGCCTAGGTATGGACC  200

seq1  AGGGTACAGTACAGGGGACTGAGAAAATGTGTTAACAATGTCTCCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACAGTACAGGGGACTGAGAAAATGTGTTAACAATGTCTCCCTTTA  250

seq1  TGCAGAGAAGGGAAGGTGACAGTCCTTAAAGCTGTCCTCTCACTGGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAAGGGAAGGTGACAGTCCTTAAAGCTGTCCTCTCACTGGCTAC  300

seq1  TATAGAGCCTTCCACCTATAGCTCAGAAGGGACTCCCTGGTTACTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCCTTCCACCTATAGCTCAGAAGGGACTCCCTGGTTACTCAAAG  350

seq1  CAGGGCTCTGAAGGAAATGGAGCTAAACTCATGGCGACTTTACAAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCTGAAGGAAATGGAGCTAAACTCATGGCGACTTTACAAGTGAA  400

seq1  GATCTAGTACAGCTTTTGTTTCATTATTCACTATGTAACCACTTTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGTACAGCTTTTGTTTCATTATTCACTATGTAACCACTTTTCCCT  450

seq1  TCTATGGGGAAAATTAGAGTAGACTTCACCCAGAATCATGTTATAGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGGAAAATTAGAGTAGACTTCACCCAGAATCATGTTATAGCTTG  500

seq1  AGTGTAAAGAAAGAGGGACTAAGAAAGTGTTTCTTCTGTGTCCTGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAGAAAGAGGGACTAAGAAAGTGTTTCTTCTGTGTCCTGAATAA  550

seq1  GGATCTTCAGTGATAGTCAGGGGGTATTTCTCATTCCCTGAATAAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCAGTGATAGTCAGGGGGTATTTCTCATTCCCTGAATAAATATA  600

seq1  CTTCTGGAAGAACTGGAGAACATCTCAGCCTCCCCCCCCCCCCCCCCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAAGAACTGGAGAACATCTCAGCCTCCCCCCCCCCCCCCCCGGC  650

seq1  CTGCTGTCCTCTGGTTTTCTTGATTTTCCATGTCACATTATATCATTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCCTCTGGTTTTCTTGATTTTCCATGTCACATTATATCATTATC  700

seq1  TGTTGCTATGGTGTGTATAAGTGCAGTTGCATGACTGTAAAGTTGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTATGGTGTGTATAAGTGCAGTTGCATGACTGTAAAGTTGAAACA  750

seq1  TTGACCAAGAGTAAGCTGTCAGTTGTCCATGGAGAGAAGGGCACTGTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAGAGTAAGCTGTCAGTTGTCCATGGAGAGAAGGGCACTGTTAC  800

seq1  CACACTGAGATGACTCAGCAGGTGAGGCCAATGATCTTTGGTCATGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAGATGACTCAGCAGGTGAGGCCAATGATCTTTGGTCATGTGTG  850

seq1  CTACTGTGCATATAAGGCACAGTCACAGTGCTCTATGATCACATGTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGCATATAAGGCACAGTCACAGTGCTCTATGATCACATGTGCTA  900

seq1  TTTTGCATATAAA-GAACAAACACAATCTTGGGTGAAAATAGACAAACCT  949
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  TTTTGCATATAAAGGAACAAACAC-ATCTTGGGTGAAAATAGACAAACCT  949

seq1  AGCCTATTGTATAGGATTTCCCCACATGAAATGTCTAGTGGCAAAAGCAG  999
      ||| ||||||||||||||||||||||||||||||||||| || |||||||
seq2  AGCTTATTGTATAGGATTTCCCCACATGAAATGTCTAGTTGC-AAAGCAG  998

seq1  CTATGGTGACAGAGAGAGTGCAGTGGTCATCTGTGAGGGTGTGGAGGGCA  1049
      |||||||||| |||||||||||||||||||||||||||| |||   ||||
seq2  CTATGGTGACTGAGAGAGTGCAGTGGTCATCTGTGAGGG-GTGTGAGGCA  1047

seq1  CTGCTGGAGAATGGAAACAACTCAGGTTTGGGGCTCTGGGAAAGCTCTGT  1099
      ||||  | |||  | ||||||||||  |||||  |||||   || |||||
seq2  CTGCCTGGGAAATGCAACAACTCAG--TTGGG--TCTGG---AG-TCTGT  1089

seq1  GCTCTAGCCTAGTTGACTGCTACATTGAC  1128
      | |||||||||| |||||||| |||||||
seq2  G-TCTAGCCTAG-TGACTGCT-CATTGAC  1115