BAC Information

Click to search

BAC

Clone NameB6Ng01-298B16
Chromosome13 (Build37)
Map Location 112,007,087 - 112,177,762
singlet/doubletdoublet
Overlap gene4732495G21Rik, LOC100040640, EG621953
Upstream geneRab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
Downstream geneGpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298B16.bB6Ng01-298B16.g
ACCGA093301GA093302
length1,138906
definitionB6Ng01-298B16.b B6Ng01-298B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,007,087 - 112,008,219)(112,176,870 - 112,177,762)
sequence
gaattctccggtctgttaagtggaacagagaagatttttcttatccctac
aaaaagtagcactgagtactcagtgatttaaagcaccctgactaattata
tcagctaatgtctcaaatgtactaaacaagtaattctagatgatatgaag
ggaaaatggcagctggggggatgggtgtgggaagccttcactaaacagaa
gtatagcagattactttcccagtccccagcatgaaagtgctatgcttcat
tacataaaccacaacagctcggtgattctgtccaatcctttagggccagg
atcctgggttttagaacaaaacacaagtaacaaagcttatttttaagcaa
tacttataacaatgttccaaaaaggtattttttttgtttactgaatactc
ttttttattggtttttaagtatcatcttgtcctctctgcttcccacccta
tcactaatcataaaacacaaactccacacacacacacacacacacacaca
cacacacacacttgatggcttcaaagtaactccataaggaaaaaaatatt
ctgaggccaaaatattgataggcagctgagagcgaaatggatttcataag
gcagacaaggatctatccaatctcatagcatagaggaaaccctatcactt
gcttatttacaaagtcagcagcccagctgaaaagtgggcagaagctagct
cttcacagacaaaggaacactggtttttgaacaaaagaagatggctggcc
tcattcataagagaaatacaagctgaaacaacaagggccaatcaacatgt
ttctgtggattagattggcaatttttataaagggctttaagatgttccat
gccattaaggtgtggagaatataacctggaatcataattactgcaattta
taatatttactaacaccctatagatatattttgcagaggcacaccaaaaa
atagatactatttttcatttgtaacataatattaggaggaaatagtttaa
acccaaataaatattcataagttagggaggatatagaactattgcaaaaa
tgttaaaaacagaccccaacccacacgaggttatagaataatttaaagat
cattccaggacctgaacttcctgaacttcaactcttat
tccgcggaattctttttcttttcttttttcttttcttttcttttcttttc
ttttcttttcttttcttttcttttcttttctcttctcttctcttctcttc
tcttctcttctcttctcttctcttctctttcctttcctttcctttccttt
cctttccttttcctttcttttcttttctcttttctttaatagttaaagat
attttaatttcattttattaaagcaaatgtatatttaaaaataaaatatt
atacaaatacccagcttatggtggtagcaatagcattcccttccctattc
ctagtttcaattatttcaactcttttatttatattcttcacttaccttat
gattgctaaataacagacatacttctggtttttttttttctttaaaactt
ttatgacctagtaaatgtaattagggtgacttccacgaatatggctgggg
actattacagaagtatgggcagcttagaatctttctctattaagaaaatg
tctaaatctcagtgttttttttttttttttttagtttttaaaacaattaa
ctgtaaataatgtatatgtgtgtgtgtgtgtatatgttcatgggagtaca
agtactcacagaggcaagaagagaacacaagattccatgaagttggagtt
gtaggcaggtatggagtgcatggagtgggtgctaggaaccaaactcaggt
ctcttcaagagccatgtatgcttttaactgggtgagccattctctccagc
ccccagaaattgggacccctacaatgttcattttgcttgacaagagaata
cttagtataatcgtttgtggtggatatttcctgtcccactgtcccaccca
aatgtgtggaaggtttatggtggcgctcttactgtatccaggacactgac
atattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112007087_112008219
seq2: B6Ng01-298B16.b_47_1184

seq1  GAATTCTCCGGTCTGTTAAGTGGAACAGAGAAGATTTTTCTTATCCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGGTCTGTTAAGTGGAACAGAGAAGATTTTTCTTATCCCTAC  50

seq1  AAAAAGTAGCACTGAGTACTCAGTGATTTAAAGCACCCTGACTAATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGCACTGAGTACTCAGTGATTTAAAGCACCCTGACTAATTATA  100

seq1  TCAGCTAATGTCTCAAATGTACTAAACAAGTAATTCTAGATGATATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAATGTCTCAAATGTACTAAACAAGTAATTCTAGATGATATGAAG  150

seq1  GGAAAATGGCAGCTGGGGGGATGGGTGTGGGAAGCCTTCACTAAACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGCAGCTGGGGGGATGGGTGTGGGAAGCCTTCACTAAACAGAA  200

seq1  GTATAGCAGATTACTTTCCCAGTCCCCAGCATGAAAGTGCTATGCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCAGATTACTTTCCCAGTCCCCAGCATGAAAGTGCTATGCTTCAT  250

seq1  TACATAAACCACAACAGCTCGGTGATTCTGTCCAATCCTTTAGGGCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAACCACAACAGCTCGGTGATTCTGTCCAATCCTTTAGGGCCAGG  300

seq1  ATCCTGGGTTTTAGAACAAAACACAAGTAACAAAGCTTATTTTTAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGTTTTAGAACAAAACACAAGTAACAAAGCTTATTTTTAAGCAA  350

seq1  TACTTATAACAATGTTCCAAAAAGGTATTTTTTTTGTTTACTGAATACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAACAATGTTCCAAAAAGGTATTTTTTTTGTTTACTGAATACTC  400

seq1  TTTTTTATTGGTTTTTAAGTATCATCTTGTCCTCTCTGCTTCCCACCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTGGTTTTTAAGTATCATCTTGTCCTCTCTGCTTCCCACCCTA  450

seq1  TCACTAATCATAAAACACAAACTCCACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATCATAAAACACAAACTCCACACACACACACACACACACACACA  500

seq1  CACACACACACTTGATGGCTTCAAAGTAACTCCATAAGGAAAAAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACTTGATGGCTTCAAAGTAACTCCATAAGGAAAAAAATATT  550

seq1  CTGAGGCCAAAATATTGATAGGCAGCTGAGAGCGAAATGGATTTCATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCAAAATATTGATAGGCAGCTGAGAGCGAAATGGATTTCATAAG  600

seq1  GCAGACAAGGATCTATCCAATCTCATAGCATAGAGGAAACCCTATCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAAGGATCTATCCAATCTCATAGCATAGAGGAAACCCTATCACTT  650

seq1  GCTTATTTACAAAGTCAGCAGCCCAGCTGAAAAGTGGGCAGAAGCTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTACAAAGTCAGCAGCCCAGCTGAAAAGTGGGCAGAAGCTAGCT  700

seq1  CTTCACAGACAAAGGAACACTGGTTTTTGAACAAAAGAAGATGGCTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGACAAAGGAACACTGGTTTTTGAACAAAAGAAGATGGCTGGCC  750

seq1  TCATTCATAAGAGAAATACAAGCTGAAACAACAAGGGCCAATCAACATG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATTCATAAGAGAAATACAAGCTGAAACAACAAGGGCCAATCAACATGT  800

seq1  TTCTGTGGATTAGATTGGCAA-TTTTATAAA-GGCTTTAAGATGTTCCAT  847
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  TTCTGTGGATTAGATTGGCAATTTTTATAAAGGGCTTTAAGATGTTCCAT  850

seq1  GCCATTAAGGTGTGGAGAATATAACCTGGAATCATAATTACTGCAATTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCATTAAGGTGTGGAGAATATAACCTGGAATCATAATTACTGCAATTT-  899

seq1  ATAATAATTACTAACACCCTATAGATATA-TTTGCAGAGGCACACCAAAA  946
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAATATTTACTAACACCCTATAGATATATTTTGCAGAGGCACACCAAAA  949

seq1  AATAGATACTATTTTTCA-TTGTAACATAATTATTA-GAGGAAATAGTTA  994
      |||||||||||||||||| ||||||||||| ||||| |||||||||||| 
seq2  AATAGATACTATTTTTCATTTGTAACATAA-TATTAGGAGGAAATAGTTT  998

seq1  AACCCAAAATAAATA-TCATAAGT--AGGAGAATATAGAACTATGCAAAA  1041
      || || ||||||||| ||||||||   |||| ||||||||||||   |||
seq2  AAACCCAAATAAATATTCATAAGTTAGGGAGGATATAGAACTATTGCAAA  1048

seq1  AATGTTAAAAAACAGACCCCCAAACCCACACGA-GTTATAGAATA--TTA  1088
      |||||| |||||||||||||  ||||||||||| |||||||||||  |||
seq2  AATGTT-AAAAACAGACCCC--AACCCACACGAGGTTATAGAATAATTTA  1095

seq1  AAGAATCAATTTCCAGGA-CTGACACTTCCTG-ACCTCAACTCTTAT  1133
      ||| ||||  |||||||| |||| |||||||| || |||||||||||
seq2  AAG-ATCA--TTCCAGGACCTGA-ACTTCCTGAACTTCAACTCTTAT  1138

seq1: chr13_112176870_112177762
seq2: B6Ng01-298B16.g_67_966 (reverse)

seq1  CAATATGTCAGTGTCCT-GATACAGT-AGAGCGCCACCATAAACC-TCCA  47
      ||||||||||||||||| |||||||| |||||||||||||||||| ||||
seq2  CAATATGTCAGTGTCCTGGATACAGTAAGAGCGCCACCATAAACCTTCCA  50

seq1  CACATTTGGGT-GGACAGT-GGACAGGAAATATCCA-CAC-AACGATTAT  93
      ||||||||||| ||||||| |||||||||||||||| ||| |||||||||
seq2  CACATTTGGGTGGGACAGTGGGACAGGAAATATCCACCACAAACGATTAT  100

seq1  ACTAAGTATTCTCTTGTCAAGC-AAATG-ACCTTGTAGGGGTCCCAA-TT  140
      |||||||||||||||||||||| ||||| || ||||||||||||||| ||
seq2  ACTAAGTATTCTCTTGTCAAGCAAAATGAACATTGTAGGGGTCCCAATTT  150

seq1  CTGGGGGCTGGAGAG-ATGGCTCA-CCAGTTAAAAGCATACATGGCTCTT  188
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CTGGGGGCTGGAGAGAATGGCTCACCCAGTTAAAAGCATACATGGCTCTT  200

seq1  GAAGAGACCTGAGTTTGGTTCCTAGCACCCACTCCATGCACTCCATACCT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACCTGAGTTTGGTTCCTAGCACCCACTCCATGCACTCCATACCT  250

seq1  GCCTACAACTCCAACTTCATGGAATCTTGTGTTCTCTTCTTGCCTCTGTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAACTCCAACTTCATGGAATCTTGTGTTCTCTTCTTGCCTCTGTG  300

seq1  AGTACTTGTACTCCCATGAACATATACACACACACACACATATACATTAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGTACTCCCATGAACATATACACACACACACACATATACATTAT  350

seq1  TTACAGTTAATTGTTTTAAAAACTAAAAAAAAAAAAAAAAAACACTGAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTAATTGTTTTAAAAACTAAAAAAAAAAAAAAAAAACACTGAGA  400

seq1  TTTAGACATTTTCTTAATAGAGAAAGATTCTAAGCTGCCCATACTTCTGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACATTTTCTTAATAGAGAAAGATTCTAAGCTGCCCATACTTCTGT  450

seq1  AATAGTCCCCAGCCATATTCGTGGAAGTCACCCTAATTACATTTACTAGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCCCAGCCATATTCGTGGAAGTCACCCTAATTACATTTACTAGG  500

seq1  TCATAAAAGTTTTAAAGAAAAAAAAAAACCAGAAGTATGTCTGTTATTTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAGTTTTAAAGAAAAAAAAAAACCAGAAGTATGTCTGTTATTTA  550

seq1  GCAATCATAAGGTAAGTGAAGAATATAAATAAAAGAGTTGAAATAATTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATAAGGTAAGTGAAGAATATAAATAAAAGAGTTGAAATAATTGA  600

seq1  AACTAGGAATAGGGAAGGGAATGCTATTGCTACCACCATAAGCTGGGTAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAATAGGGAAGGGAATGCTATTGCTACCACCATAAGCTGGGTAT  650

seq1  TTGTATAATATTTTATTTTTAAATATACATTTGCTTTAATAAAATGAAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATATTTTATTTTTAAATATACATTTGCTTTAATAAAATGAAAT  700

seq1  TAAAATATCTTTAACTATTAAAGAAAAGAGAAAAGAAAAGAAAGGAAAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCTTTAACTATTAAAGAAAAGAGAAAAGAAAAGAAAGGAAAAG  750

seq1  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAGAAGAGAAGAGAAGAGAAG  788
      |||||||||||||||||||||||||||     ||||||||||||||||||
seq2  GAAAGGAAAGGAAAGGAAAGGAAAGGA-----AAGAGAAGAGAAGAGAAG  795

seq1  AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAAAAGAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAAAAGAAA  845

seq1  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAAGAAAAGAAAAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAAGAAAAGAAAAAG  895

seq1  AATTC  893
      |||||
seq2  AATTC  900