BAC Information

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BAC

Clone NameB6Ng01-298H21
Chromosome13 (Build37)11 (Build37)
Map Location 56,096,512 - 56,096,92960,687,288 - 60,688,013
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
Downstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298H21.bB6Ng01-298H21.g
ACCGA093584GA093585
length792726
definitionB6Ng01-298H21.b B6Ng01-298H21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,096,512 - 56,096,929)(60,687,288 - 60,688,013)
sequence
gaattcagagatcaccctcccttaatctactactcatagccactatgcct
taagatctccataccaagatccaggccagaaacttctctctccagcctcc
agaacgaatcactggggagccttccatttctggattgtagttcattccag
atacagtcaagttgacaaccaggaatagccactacaaaccacatggtggc
ttatgaccatctataagggcatctgatgccctcttatagcatgcaggtgt
gcatgcagcaaagaacccacacttgagagagagagagagagagagagaga
gagagagagagagagagagagagagaaagagagagagagaatgagaggaa
gtaggagagggagagagaaccctgcacataataaccctgaggctcccatg
ttaatgagggattactcgacaactgtaaaactgtctctttcacctcgtgg
tggtactaaaatctgccttccacagatggtctacatctttcgggatgcca
gcaacctgttcttctagcatgctgccacaggcagattcaagatccatttt
gctatctgcatgtaacccaggccattatgaaacaatacccctgctcctgc
accacacaccctaatatgcctttgcttctctatcagaaatgatgcaatca
gattgaatctcctttgttcggcagattggggttggtcaccttggagcaag
caaggcaattgaatacacaaataccttcatgaaggaccggaaaggaattt
tttctaccaattcaagtcacagctgggtttcccaggtcactc
gaattcaatctggagaccaagctggccgcaaactcagagatccacctgcc
tctgcctctcaagtgctgggattaaagatgtgtgcaaggtttgttttgat
gatgtgtttgagtgtgcacctgtgagtggagctgcagttgcaggtggctg
tgagccacctcaggtgggtattcagctggtgttctctggaagggcagtgc
cgttgtgccacagtagctttgctcctgtccctcgagttcaggcagagcca
gatggggaggataccttgatgaaagcatcctctgtttgttgtggttattg
tttgtttttaaaaaggcccaagcaccaggtgctagcctagatagatgtga
gtttccacttgaaccctgcctgagaaactggggcctaggaagtgaaccgt
cagattgagttctggatctagagacctcccagcccccaaacacacacaca
cacacacacacacacacacacacactctctctctctctctctacacacac
acacacacacactctctctctctctctctctctctctctctcacacacac
acacacacacacacactctctctcacacacactctctctctctctctctc
tctccctcaccctctctctctcactctctcttactctcggtcacttccgc
cccttcctctttggcttaaagagtggcggacgatgaatagctgatctctg
ctccgtagagattgatgaataaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56096512_56096929
seq2: B6Ng01-298H21.b_413_837 (reverse)

seq1  GAGTGACCTGGG-AACCCAGCTGTGACTTGAA-TGGTAG-AAAAATTCC-  46
      |||||||||||| ||||||||||||||||||| |||||| ||||||||| 
seq2  GAGTGACCTGGGAAACCCAGCTGTGACTTGAATTGGTAGAAAAAATTCCT  50

seq1  TTCCGGTCCTTCATGAAGGTATTTGTGTATTCAGTTGCCTTGCTTGCTCC  96
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCCGGTCCTTCATGAAGGTATTTGTGTATTCAATTGCCTTGCTTGCTCC  100

seq1  AAGGTGACCAACCCCAATCTGCCGAACAAAGGAGATTCAATCTGATTGCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACCAACCCCAATCTGCCGAACAAAGGAGATTCAATCTGATTGCA  150

seq1  TCATTTCTGATAGAGAAGCAAAGGCATATTAGGGTGTGTGGTGCAGGAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTGATAGAGAAGCAAAGGCATATTAGGGTGTGTGGTGCAGGAGC  200

seq1  A-GGGTATTGTTTCATAATGGCCTGGGTTACATGCAGATAGC-AAATGGA  244
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGGGTATTGTTTCATAATGGCCTGGGTTACATGCAGATAGCAAAATGGA  250

seq1  TCTTGAATCTGCCTGTGGCAGCATGCTAGAAGAACAGGTTGCTGGCATCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATCTGCCTGTGGCAGCATGCTAGAAGAACAGGTTGCTGGCATCC  300

seq1  CG-AAGATGTAGACCATCTGTGGAAGGCAGATTTTAGTACCACCACGAGG  343
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGATGTAGACCATCTGTGGAAGGCAGATTTTAGTACCACCACGAGG  350

seq1  TGAAAGAGACAGTTTTACAGTTGTCGAGTAATCCCTCATTAACATGGGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGACAGTTTTACAGTTGTCGAGTAATCCCTCATTAACATGGGAG  400

seq1  CCTCAGGGTTATTATGTGCAGGGTT  418
      |||||||||||||||||||||||||
seq2  CCTCAGGGTTATTATGTGCAGGGTT  425

seq1: chr11_60687288_60688013
seq2: B6Ng01-298H21.g_66_791 (reverse)

seq1  ATATTTATTCAATAATCTATACAGAGCAGAGATCAGATACCCATGGGGCC  50
      |||||||||||  ||||| ||| ||||||||||||| ||  |||  | ||
seq2  ATATTTATTCATCAATCTCTACGGAGCAGAGATCAGCTATTCAT-CGTCC  49

seq1  CCCACT-GCTAAGGCAGAGAGGAAGGGGGGGAAGGGAGGGAGAGTAAGAG  99
       |||||   |||| || ||||||||||| ||||| ||  |||||||||||
seq2  GCCACTCTTTAAGCCAAAGAGGAAGGGGCGGAAGTGACCGAGAGTAAGAG  99

seq1  AGAGTGAGAGAAGGAGGGGGAGGGAGAGAGGGGGAGAGAGAGAGAGTGTG  149
      |||||||||||  ||||| ||||||||||| | |||||||||||||||||
seq2  AGAGTGAGAGAGAGAGGGTGAGGGAGAGAGAGAGAGAGAGAGAGAGTGTG  149

seq1  TGTGTGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAG  199
      |||| ||||||| | |||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAG  199

seq1  AGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTAGAGAGAGAGAGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTAGAGAGAGAGAGAGA  249

seq1  GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGGGGCTGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGGGGCTGGG  299

seq1  AGGTCTCTAGATCCAGAACTCAATCTGACGGTTCACTTCCTAGGCCCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTAGATCCAGAACTCAATCTGACGGTTCACTTCCTAGGCCCCAG  349

seq1  TTTCTCAGGCAGGGTTCAAGTGGAAACTCACATCTATCTAGGCTAGCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGCAGGGTTCAAGTGGAAACTCACATCTATCTAGGCTAGCACC  399

seq1  TGGTGCTTGGGCCTTTTTAAAAACAAACAATAACCACAACAAACAGAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTGGGCCTTTTTAAAAACAAACAATAACCACAACAAACAGAGGA  449

seq1  TGCTTTCATCAAGGTATCCTCCCCATCTGGCTCTGCCTGAACTCGAGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATCAAGGTATCCTCCCCATCTGGCTCTGCCTGAACTCGAGGGA  499

seq1  CAGGAGCAAAGCTACTGTGGCACAACGGCACTGCCCTTCCAGAGAACACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAAAGCTACTGTGGCACAACGGCACTGCCCTTCCAGAGAACACC  549

seq1  AGCTGAATACCCACCTGAGGTGGCTCACAGCCACCTGCAACTGCAGCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATACCCACCTGAGGTGGCTCACAGCCACCTGCAACTGCAGCTCC  599

seq1  ACTCACAGGTGCACACTCAAACACATCATCAAAACAAACCTTGCACACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGGTGCACACTCAAACACATCATCAAAACAAACCTTGCACACAT  649

seq1  CTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTGGATCTCTGAGTTTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTGGATCTCTGAGTTTGC  699

seq1  GGCCAGCTTGGTCTCCAGATTGAATTC  726
      |||||||||||||||||||||||||||
seq2  GGCCAGCTTGGTCTCCAGATTGAATTC  726